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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024567 ID=TCONS_00024567|Name=TCONS_00024567|organism=Clytia hemisphaerica|type=transcript|length=1374bp
CTTTGATTTGACGAAATCTGCTCGAGTGTAACGCGTTACCATATCAATGA
GGTATAGTATATGTTTACCGTTTCTTTCTTTGAGATCAATGCTGACAACT
TcattaaatttcattttatcgGGAGTAAATGAATTACCGACAGCTGGTTT
TGGAATCGATGGTTTGTACATTGTAGCGTTTACACACTTCACAGTTCTTG
GTGTAATTTTCAAGGATGTTCAAAAATTCCTTGTCAGGATCATTCAAGCC
ACTCAagacttttttcataaattcgAAAGTTGGATGGCAAAACTGTCGAT
GAATTTGTTTGGCTGCATGCGTTTTTTGCTCTCTGGACATTTCTTTGACG
GAAAACATAACATCAACTACTTCAACGGGAAATCCAGGTTGAATATTAAT
ACACCAGTGACCAGACGGAGCATTAAACAGCTCTACATTGTTCTTAACCG
AATTTATTGTAATTTCTGCAGTGTCATCGCCTGTATTTATCAAAACGTTC
CACTCTTTCATGTTGTGTTTCCCAAGAAGTGATGGAAGATCGGTTTCAAC
AACATCAAATTCGATGAATGTTATTTGATTTGCAATCATGATAGGtgctt
tgattttctttatcgaTTTAAAAACTCGTCCAccaccaaatttgaattta
ttacTACTACTCTGTTCAGTGACCTTTTTACGCATACTGTCACTCATTGA
ATCAAGAAAGCAATCAGTCCATACAGATCCTGCAACATTCTGTGGGCAAC
CTGTGTCTAGGATCATGTAATTCAAAGCTCCTCCAGCAGATGTGTCAGCA
GATCGACATTCAATGATGTTGTCGTTCTCGTTTTTACTCATGGATGCAAC
AAATGTATGGTTTTCATCTGAAGAATTGTCTCGATTTGTCTTCTTTTCAC
GATGCGGGCAATCTCTTGCAAAATGTGCGATGGATCCGCAGATACGACAT
GTTAACGGTCTACCATCCGAGTTTAGTGGATTAGTGCGAATTGGGGAGCG
TGGGGTAAATCGGTTGTTTGGTGGCGGTTTATCCTTTGATCGATATTGTT
TCCATGCCACATACGATTCATATTCTTCAACGGATGTAAACAATGTTTCT
GTTTTAACATTTACAGCTGCAGATCGCTCCGGTTGCGGTTGGTTACTCAA
AACGGCAGATaacccaaaatatttctttagtgCTTTCTTAGCTTGTTTAT
ACATCTCATTTGGTTGACCAGTCACCGTCAACCTCTCTCATAGCTAATCT
TAGGTCAGAGTCATTTAGATTAGCCCCACAAAGAAGATTCAGGCCATGAA
TTCTATCACCCAGGTTCATGTTGTATCTTTCCATTCGAACTTTGTACTTT
TCATAGTGCATTATATATTGTTCA Run BLAST on NCBI protein sequence of TCONS_00024567-protein >TCONS_00024567-protein ID=TCONS_00024567-protein|Name=TCONS_00024567-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
MYKQAKKALKKYFGLSAVLSNQPQPERSAAVNVKTETLFTSVEEYESYVA
WKQYRSKDKPPPNNRFTPRSPIRTNPLNSDGRPLTCRICGSIAHFARDCP
HREKKTNRDNSSDENHTFVASMSKNENDNIIECRSADTSAGGALNYMILD
TGCPQNVAGSVWTDCFLDSMSDSMRKKVTEQSSSNKFKFGGGRVFKSIKK
IKAPIMIANQITFIEFDVVETDLPSLLGKHNMKEWNVLINTGDDTAEITI
NSVKNNVELFNAPSGHWCINIQPGFPVEVVDVMFSVKEMSREQKTHAAKQ
IHRQFCHPTFEFMKKVLSGLNDPDKEFLNILENYTKNCEVCKRYNVQTID
SKTSCR Run BLAST on NCBI transcript from alignment at sc0000502:103624..104997 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024567 ID=TCONS_00024567|Name=TCONS_00024567|organism=Clytia hemisphaerica|type=transcript|length=1374bp|location=Sequence derived from alignment at sc0000502:103624..104997 (Clytia hemisphaerica)
TGAACAATATATAATGCACTATGAAAAGTACAAAGTTCGAATGGAAAGAT
ACAACATGAACCTGGGTGATAGAATTCATGGCCTGAATCTTCTTTGTGGG
GCTAATCTAAATGACTCTGACCTAAGATTAGCTATGAGAGAGGTTGACGG
TGACTGGTCAACCAAATGAGATGTATAAACAAGCTAAGAAAGcactaaag
aaatattttgggttATCTGCCGTTTTGAGTAACCAACCGCAACCGGAGCG
ATCTGCAGCTGTAAATGTTAAAACAGAAACATTGTTTACATCCGTTGAAG
AATATGAATCGTATGTGGCATGGAAACAATATCGATCAAAGGATAAACCG
CCACCAAACAACCGATTTACCCCACGCTCCCCAATTCGCACTAATCCACT
AAACTCGGATGGTAGACCGTTAACATGTCGTATCTGCGGATCCATCGCAC
ATTTTGCAAGAGATTGCCCGCATCGTGAAAAGAAGACAAATCGAGACAAT
TCTTCAGATGAAAACCATACATTTGTTGCATCCATGAGTAAAAACGAGAA
CGACAACATCATTGAATGTCGATCTGCTGACACATCTGCTGGAGGAGCTT
TGAATTACATGATCCTAGACACAGGTTGCCCACAGAATGTTGCAGGATCT
GTATGGACTGATTGCTTTCTTGATTCAATGAGTGACAGTATGCGTAAAAA
GGTCACTGAACAGAGTAGTAgtaataaattcaaatttggtggTGGACGAG
TTTTTAAAtcgataaagaaaatcaaagcaCCTATCATGATTGCAAATCAA
ATAACATTCATCGAATTTGATGTTGTTGAAACCGATCTTCCATCACTTCT
TGGGAAACACAACATGAAAGAGTGGAACGTTTTGATAAATACAGGCGATG
ACACTGCAGAAATTACAATAAATTCGGTTAAGAACAATGTAGAGCTGTTT
AATGCTCCGTCTGGTCACTGGTGTATTAATATTCAACCTGGATTTCCCGT
TGAAGTAGTTGATGTTATGTTTTCCGTCAAAGAAATGTCCAGAGAGCAAA
AAACGCATGCAGCCAAACAAATTCATCGACAGTTTTGCCATCCAACTTTc
gaatttatgaaaaaagtctTGAGTGGCTTGAATGATCCTGACAAGGAATT
TTTGAACATCCTTGAAAATTACACCAAGAACTGTGAAGTGTGTAAACGCT
ACAATGTACAAACCATCGATTCCAAAACCAGCTGTCGGTAATTCATTTAC
TCCcgataaaatgaaatttaatgAAGTTGTCAGCATTGATCTCAAAGAAA
GAAACGGTAAACATATACTATACCTCATTGATATGGTAACGCGTTACACT
CGAGCAGATTTCGTCAAATCAAAG Coding sequence (CDS) from alignment at sc0000502:103624..104997 >TCONS_00024567 ID=TCONS_00024567|Name=TCONS_00024567|organism=Clytia hemisphaerica|type=CDS|length=1071bp|location=Sequence derived from alignment at sc0000502:103624..104997 (Clytia hemisphaerica)
ATGTATAAACAAGCTAAGAAAGcactaaagaaatattttgggttATCTGC
CGTTTTGAGTAACCAACCGCAACCGGAGCGATCTGCAGCTGTAAATGTTA
AAACAGAAACATTGTTTACATCCGTTGAAGAATATGAATCGTATGTGGCA
TGGAAACAATATCGATCAAAGGATAAACCGCCACCAAACAACCGATTTAC
CCCACGCTCCCCAATTCGCACTAATCCACTAAACTCGGATGGTAGACCGT
TAACATGTCGTATCTGCGGATCCATCGCACATTTTGCAAGAGATTGCCCG
CATCGTGAAAAGAAGACAAATCGAGACAATTCTTCAGATGAAAACCATAC
ATTTGTTGCATCCATGAGTAAAAACGAGAACGACAACATCATTGAATGTC
GATCTGCTGACACATCTGCTGGAGGAGCTTTGAATTACATGATCCTAGAC
ACAGGTTGCCCACAGAATGTTGCAGGATCTGTATGGACTGATTGCTTTCT
TGATTCAATGAGTGACAGTATGCGTAAAAAGGTCACTGAACAGAGTAGTA
gtaataaattcaaatttggtggTGGACGAGTTTTTAAAtcgataaagaaa
atcaaagcaCCTATCATGATTGCAAATCAAATAACATTCATCGAATTTGA
TGTTGTTGAAACCGATCTTCCATCACTTCTTGGGAAACACAACATGAAAG
AGTGGAACGTTTTGATAAATACAGGCGATGACACTGCAGAAATTACAATA
AATTCGGTTAAGAACAATGTAGAGCTGTTTAATGCTCCGTCTGGTCACTG
GTGTATTAATATTCAACCTGGATTTCCCGTTGAAGTAGTTGATGTTATGT
TTTCCGTCAAAGAAATGTCCAGAGAGCAAAAAACGCATGCAGCCAAACAA
ATTCATCGACAGTTTTGCCATCCAACTTTcgaatttatgaaaaaagtctT
GAGTGGCTTGAATGATCCTGACAAGGAATTTTTGAACATCCTTGAAAATT
ACACCAAGAACTGTGAAGTGTGTAAACGCTACAATGTACAAACCATCGAT
TCCAAAACCAGCTGTCGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024567-exon-sc0000502-1491911889:103624..104997 | TCONS_00024567-exon-sc0000502-1491911889:103624..104997 | Clytia hemisphaerica | exon |
| TCONS_00024567-exon-sc0000502-1510915933:103624..104997 | TCONS_00024567-exon-sc0000502-1510915933:103624..104997 | Clytia hemisphaerica | exon |
| TCONS_00024567-exon-sc0000502-1575043694:103624..104997 | TCONS_00024567-exon-sc0000502-1575043694:103624..104997 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000502 | supercontig | sc0000502:103624..104997 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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