|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024565 ID=TCONS_00024565|Name=TCONS_00024565|organism=Clytia hemisphaerica|type=transcript|length=1773bp
ttccttcacccgcattccagaaacatttttttattttcgcttaAATATGA
TAAAAGTATaagaacaaaaatttatttggcaCTCAAGATCTCTTCTAAAT
CCAACGCCATGTCAGCTCCAAGAAATGCGACACCAAAAACCGAGAAAATG
CCTTTCCATGATTTGAAAACGTTTGTAAACAAAATTTCTGTTGGTTTAAT
GTTGATCAGGTAGACGAGGTTGGCGAAAACCCGGGCGATACCAGAAACGG
AAAGACAAGCAGCACTCAGTATCTTGTTCCTTTTGATGAAATCCTCTGTT
GCGAAACGTCTCATCAGAATTCTACCGATCGATTCCATAATCACGCCAAA
CCAATTCAACAATCCCCAAAGAAGATGATTCCGTTGAGTTCCACCATGCC
AAAATGCCACGAACAGAAAGCATAAGAAAGAGGACAATATTTGCACTGGA
ACCCCTCTTCTCGATCCACCCATCGgaaaataaatgtttttctgcaaaat
tttataCAAGCCTTGATCGAACGTACGCCACATATCGNAATCGGAAAGTA
AATgtttttctgcaaaattttataCAAGCCTTGATCGAATGTACGCCACA
TATCGGTGAAAGTCAAAGTCATTTGGGCGCATTTTGGTGTACCTGGAGGA
ATGTGGCCGTCAAGTTTTGCGAATATCCCAACAAATCGGTAAAATATGGT
ATATTTGATGCAGAAGATTTGGACATGATAGAATGCTAAACACATCGAAT
CAAAACTACCTAGCTGATAGAGAAATAATCCTGAATATAGATGAGTGAGT
GCAGTTGAAGTGTATTTGAAGACAACTTGGTCCATGATAAGCACATATAA
CAAAGAAGTCGAGAtgtctttcaaaatttccattttattgatttttgctt
tgtttttatctCCGTTCATAAAATCCTTCATGGTCAAAACAGGACCACTG
AAGAACAAAGGTATGTAAAAGATATAGTCTAAAAAGTCCANACTTCATGG
TTAAAACAGGACCACTGAAGAACAAAGGTATGTAAAAAATATAGTCTAAA
AAGTCCAGGAATTCGGATGCaatgttttcttcatttttgtcaTCAGTCGA
GTCCTGTTCTTCTCCATCATCTGTTTCTGCGTCATCTACTTCTGCTTTTG
TTGGTGTGGCATTCGTCGAGTTTGTGACATCACAACCGAAATCCGCGCAT
CTCAAATAAGCAAGAAAGAAACACAATCGACAAACTTCTTCATATTGTCC
ATAAACACCAAACAGATCAAACGGAACCTTCATCATATCATTCTGTTGAG
TGATGTAAACTGAACAAAGAATAGCCAGCCAAGTAATGAGCTTACTTCTC
GTCCACATCACCAAACTGAAGAACAGAATCATGTACGTCATCATCAATGC
CACCGCATTTACGGAAAGTACACCAGACAACATGGACAGTCCGATAACAA
GTCGACACGGTTTGTGGTATCTTTCTGATAAATGTCGTTTTATGAATTGA
CAGGTAGCCAAGTACAACACGTTCATGCAGCTTAAACGAACAGCATATTT
TCTCCAAGAATCATACTCATAATCTCCACCCCTGCCATGTTCTGCTGATG
GAACTTTCTTCTTTAGATCGTACGCTACGTAAAATGGGTACAAAAAGACA
ATTATTGTGAAACACCAATGAAATGCTCGAACGGTCTTCGTCTGTGTTGT
GTAAAACGACATTTTGTAAAGCAAAACAAATAGCAGGACAATTTGAACAA
CTCAGTACTTTCTTGTGACGGGG Run BLAST on NCBI protein sequence of TCONS_00024565-protein >TCONS_00024565-protein ID=TCONS_00024565-protein|Name=TCONS_00024565-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MSFYTTQTKTVRAFHWCFTIIVFLYPFYVAYDLKKKVPSAEHGRGGDYEY
DSWRKYAVRLSCMNVLYLATCQFIKRHLSERYHKPCRLVIGLSMLSGVLS
VNAVALMMTYMILFFSLVMWTRSKLITWLAILCSVYITQQNDMMKVPFDL
FGVYGQYEEVCRLCFFLAYLRCADFGCDVTNSTNATPTKAEVDDAETDDG
EEQDSTDDKNEENIASEFLDFLDYIFYIPLFFSGPVLTMKXGLFRLYLLH
TFVLQWSCFDHEGFYERR Run BLAST on NCBI transcript from alignment at sc0000502:34796..36568 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024565 ID=TCONS_00024565|Name=TCONS_00024565|organism=Clytia hemisphaerica|type=transcript|length=1773bp|location=Sequence derived from alignment at sc0000502:34796..36568 (Clytia hemisphaerica)
CCCCGTCACAAGAAAGTACTGAGTTGTTCAAATTGTCCTGCTATTTGTTT
TGCTTTACAAAATGTCGTTTTACACAACACAGACGAAGACCGTTCGAGCA
TTTCATTGGTGTTTCACAATAATTGTCTTTTTGTACCCATTTTACGTAGC
GTACGATCTAAAGAAGAAAGTTCCATCAGCAGAACATGGCAGGGGTGGAG
ATTATGAGTATGATTCTTGGAGAAAATATGCTGTTCGTTTAAGCTGCATG
AACGTGTTGTACTTGGCTACCTGTCAATTCATAAAACGACATTTATCAGA
AAGATACCACAAACCGTGTCGACTTGTTATCGGACTGTCCATGTTGTCTG
GTGTACTTTCCGTAAATGCGGTGGCATTGATGATGACGTACATGATTCTG
TTCTTCAGTTTGGTGATGTGGACGAGAAGTAAGCTCATTACTTGGCTGGC
TATTCTTTGTTCAGTTTACATCACTCAACAGAATGATATGATGAAGGTTC
CGTTTGATCTGTTTGGTGTTTATGGACAATATGAAGAAGTTTGTCGATTG
TGTTTCTTTCTTGCTTATTTGAGATGCGCGGATTTCGGTTGTGATGTCAC
AAACTCGACGAATGCCACACCAACAAAAGCAGAAGTAGATGACGCAGAAA
CAGATGATGGAGAAGAACAGGACTCGACTGAtgacaaaaatgaagaaaac
attGCATCCGAATTCCTGGACTTTTTAGACTATATTTTTTACATACCTTT
GTTCTTCAGTGGTCCTGTTTTAACCATGAAGTNTGGACTTTTTAGACTAT
ATCTTTTACATACCTTTGTTCTTCAGTGGTCCTGTTTTGACCATGAAGGA
TTTTATGAACGGagataaaaacaaagcaaaaatcaataaaatggaaattt
tgaaagacaTCTCGACTTCTTTGTTATATGTGCTTATCATGGACCAAGTT
GTCTTCAAATACACTTCAACTGCACTCACTCATCTATATTCAGGATTATT
TCTCTATCAGCTAGGTAGTTTTGATTCGATGTGTTTAGCATTCTATCATG
TCCAAATCTTCTGCATCAAATATACCATATTTTACCGATTTGTTGGGATA
TTCGCAAAACTTGACGGCCACATTCCTCCAGGTACACCAAAATGCGCCCA
AATGACTTTGACTTTCACCGATATGTGGCGTACATTCGATCAAGGCTTGt
ataaaattttgcagaaaaacATTTACTTTCCGATTNCGATATGTGGCGTA
CGTTCGATCAAGGCTTGtataaaattttgcagaaaaacatttattttcCG
ATGGGTGGATCGAGAAGAGGGGTTCCAGTGCAAATATTGTCCTCTTTCTT
ATGCTTTCTGTTCGTGGCATTTTGGCATGGTGGAACTCAACGGAATCATC
TTCTTTGGGGATTGTTGAATTGGTTTGGCGTGATTATGGAATCGATCGGT
AGAATTCTGATGAGACGTTTCGCAACAGAGGATTTCATCAAAAGGAACAA
GATACTGAGTGCTGCTTGTCTTTCCGTTTCTGGTATCGCCCGGGTTTTCG
CCAACCTCGTCTACCTGATCAACATTAAACCAACAGAAATTTTGTTTACA
AACGTTTTCAAATCATGGAAAGGCATTTTCTCGGTTTTTGGTGTCGCATT
TCTTGGAGCTGACATGGCGTTGGATTTAGAAGAGATCTTGAGtgccaaat
aaatttttgttcttATACTTTTATCATATTtaagcgaaaataaaaaaatg
tttctggaatgcgggtgaaggaa Coding sequence (CDS) from alignment at sc0000502:34796..36568 >TCONS_00024565 ID=TCONS_00024565|Name=TCONS_00024565|organism=Clytia hemisphaerica|type=CDS|length=807bp|location=Sequence derived from alignment at sc0000502:34796..36568 (Clytia hemisphaerica)
ATGTCGTTTTACACAACACAGACGAAGACCGTTCGAGCATTTCATTGGTG
TTTCACAATAATTGTCTTTTTGTACCCATTTTACGTAGCGTACGATCTAA
AGAAGAAAGTTCCATCAGCAGAACATGGCAGGGGTGGAGATTATGAGTAT
GATTCTTGGAGAAAATATGCTGTTCGTTTAAGCTGCATGAACGTGTTGTA
CTTGGCTACCTGTCAATTCATAAAACGACATTTATCAGAAAGATACCACA
AACCGTGTCGACTTGTTATCGGACTGTCCATGTTGTCTGGTGTACTTTCC
GTAAATGCGGTGGCATTGATGATGACGTACATGATTCTGTTCTTCAGTTT
GGTGATGTGGACGAGAAGTAAGCTCATTACTTGGCTGGCTATTCTTTGTT
CAGTTTACATCACTCAACAGAATGATATGATGAAGGTTCCGTTTGATCTG
TTTGGTGTTTATGGACAATATGAAGAAGTTTGTCGATTGTGTTTCTTTCT
TGCTTATTTGAGATGCGCGGATTTCGGTTGTGATGTCACAAACTCGACGA
ATGCCACACCAACAAAAGCAGAAGTAGATGACGCAGAAACAGATGATGGA
GAAGAACAGGACTCGACTGAtgacaaaaatgaagaaaacattGCATCCGA
ATTCCTGGACTTTTTAGACTATATTTTTTACATACCTTTGTTCTTCAGTG
GTCCTGTTTTAACCATGAAGTNTGGACTTTTTAGACTATATCTTTTACAT
ACCTTTGTTCTTCAGTGGTCCTGTTTTGACCATGAAGGATTTTATGAACG
Gagataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024565-exon-sc0000502-1491911889:34796..36568 | TCONS_00024565-exon-sc0000502-1491911889:34796..36568 | Clytia hemisphaerica | exon |
| TCONS_00024565-exon-sc0000502-1510915933:34796..36568 | TCONS_00024565-exon-sc0000502-1510915933:34796..36568 | Clytia hemisphaerica | exon |
| TCONS_00024565-exon-sc0000502-1575043694:34796..36568 | TCONS_00024565-exon-sc0000502-1575043694:34796..36568 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000502 | supercontig | sc0000502:34796..36568 . |
Blast
The following BLAST results are available for this feature:
|
