TCONS_00024554 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024554
Unique NameTCONS_00024554
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2909

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024554 ID=TCONS_00024554|Name=TCONS_00024554|organism=Clytia hemisphaerica|type=transcript|length=2909bp
CTCTGATGAAGACAGTTTGGGAGAAGATGAAAATTCAGCGCAAGATGTTG
GTTTCCATTCACCTTCACTCTGCCCACGTGACGGCAATCATGAAGACTCC
TCCAAGGTTGAGAAAGGGAATGAGGGACGTGTTGGTATACAAACAGAAGG
AGATGACACACCTCAAGGGTTGACGCAACCAAGCGTCATGGACAAGCAAC
AAATCAGAAGTGTTGACGTTGAAGAGATTTTTGTTGAAGAGGAAGACGAG
GAATACGAGTTTGTTGAAATCCTCTCTGAACCATCAATGAAATCAACACA
AAATGTTGAACAGGGAAGATCAACTCAACCCTCCAAACATCCATTTTCAA
CGGAGAGATTTCTCACTTCGCCAACCATCATTGTTGAGAATGTGGATGAG
GAAGTTAAAGATGAAATGGTTGCCGAAGATGAAGAGAACGGTAGCAGTGG
TGATGAATTCGTCCTCATTGAAATCGTTGAACAATATCAACAACGACAAT
CAATGGATGTTCAATTAGACAACCTGTCAAGTGGCACCCAACTTGTTGAG
GAAATTGATAAAGaagtTGAAGGCGAAGAAAGTGCGGAGACGGACGAGGA
TAAACAATTGAACGAACTTGCTAACGAACGAGATGAAGAACTTGACAACC
TCTTCCAACAACCATCAAGATCAAACCTTCAATCACCAGATGCAAACGCA
AATATCTTTTTCACCAAACCTACCGATCGTCCCCCTACCATGTCCCCACA
GATGATGGCCCGATCAATCAGCCCTTCATTGTTGTCTCCATTACCCAGTC
CTGGACCAAAAGAAGAGACGGCGAAAGTGTTTGTATTATCGAGCTACCAA
GCAGAAGTCATCCCGCCACGAGCCAAGACACCAGTGATAGAAGACTTCCA
GACATCACAAAACGAGGTTGGCAAACTGATGTTGGCTCCAGAATCTTCTT
ATGAAACAGAGGAGTTGTCTCCATCCAAGCGACACTTAGACTACCCCATC
GAGACACCCTCAAGAACCATCATGTCAGTCTCGACTATCGACATTAAGCC
TGTTTATCAGACGACGCCTACCATTCAACTACCTACGAAGGACATGATTG
TTATCAATGTTGATTTACCAAAACATAAAAGACGTTGGTCAACAGATCTC
ATTGTCAATGTAGTTCAAGAAGAGGGGGATTATCATCGGGTGGAGGATCG
ACACGTGGTCTTGGTCTTTCCTGACACCACTTACGAAGAAGTGATCACCA
TCATGTTCGTGGAGCGAGCCACACCCTCCATCAACGTCCTTTTCACACCT
GTCAATGTGGATATGGTGGATGTTAAAAGTGATGATGAAGGATCGATGTC
ACCTTTCGAAGAAATCGTCAGCGAAGAAATTACTACCTTAGCGATGAGCA
TGCCAGACTTCTTGGATGATCTCCCAGAGACGTTAGTAGACGATCAGCTA
CAACCAGAAAATccactttcaaattctcttcaGGTGAATCCGCCAGAAGA
TCAGCTGCAACCAGCCAAAGAAGATTCAAATGATACCAAAGCACCAGATG
CATTGATTCTTCCGAAACCACGAAAATTCATACCAACGACAAATTGGCCG
AATGTTGACGAAGAGAAGCTGAAAAGTCCAACGTCACCTTCACCTCTCTC
TCCTGGTGATCGTATTCTTGAACAACCGAAATTCTCATTCATCAGACGAA
TCATCTATGGTGAAAGTCCAACTCTTCTAAACGACGAGGTTACTGAACAA
TCAGAAGATCCTCCCATGCTGGTGGGGAGTGAGAATTCATCGAAACCTCA
ACCAGAGGTGAACACAATTAGACTGGGAGAAGATACTCAAGCAATACTGG
AAAATGAGTCCAATGAACCTTTCGAGATATTAACCAAGGAGCCCACGGTA
CTTTCTCAATATGCATCGCAGCCAAAAGAAGAAGAACTAGATAGGGAACC
TGTTTCAGAATCGCCTGTTATTGTTGAAACAAACATTCGATCTGATATAC
AACAATCAAAAGTTCCTGAGCTGCCTTTTCACGGAACTTCCACTTTTGAC
AAACCAGAGAGAAAGGAAAAATCAGCGTCAATGGATCAAAGACCTTTTGA
GCGAAATACCCCCATCGAGATGATGGAACATCAAACAGTTATTGTAGACT
CACTTCAAATCACTCCAAAAACGCCACAAGTAGTAGAGGAGGGTCGAGTT
CTCCAAGACTACAACGAGGAAAAATCTTTGCCAATTAGTGagccaaaaga
attgatttcTGAAGATCTTGCCGAAGAAGCAAAGGTCCCAGATCCAGAAT
CAAACGTCAAATTTGGTACATTATTGCCAGATGAGCAAGCAGATGATCGA
ACTACACCGAAGCCTTCCTATTACCAATTACTTAGTGATTCACCAGATGA
ACCAAGGCGAAGAAGTCGCGTGTGGAGCAATTCCACCACAGACTCGGAAT
GTGATATCGTTTTGATCGAAATTGAACACATGTCTACTGATGATGAATTG
GATGCGCCGCGTGACGATGATCATCTTGTTACCACGGAACCAATCGACGA
AGATAATATCATCCCTGATCAAATGAAATCAGTTGAAAGTGAGCTTGACT
TCTCATCATTGTATCAGGGAGATGAAACACCTAAATCGCCTGTCCTTCTT
GGTCTACCAGTAGATTTGGATCTGTTACCCGAAACAAGCGTTGATGACAG
TGATAAATCATCGCAAGATGAAGAACCAGAAGATAAGTATCTTCCAAAAA
GGGATCGAGTCTTTGAAGAATTTGAAGCTACAACAGAAACTCCGTTACAA
AGTCAACCAAGCTATGACCTAGATGATCACTCACAGGAAGATCTACCAAC
AGTCAAATCTTTCACCAGGATACAAACAATTACAACAGAAGATACTGAAC
CAGTCGAAN
Run BLAST on NCBI

transcript from alignment at sc0000502:155546..161447-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024554 ID=TCONS_00024554|Name=TCONS_00024554|organism=Clytia hemisphaerica|type=transcript|length=5902bp|location=Sequence derived from alignment at sc0000502:155546..161447- (Clytia hemisphaerica)
CTCTGATGAAGACAGTTTGGGAGAAGATGAAAATTCAGCGCAAGGTGTGT
TTTTGATTACTTCTTTCCTTTCTTTCATTTTATTGCGTTGTCGTTGAATT
GTGAGGGGGTCTCGATTATATTTGCAAAATGTAACTCAGTCACCCATTAG
CAAACCCGATATTACAGAAGTCTAAAAATTTATTTCCCTTGACTCAGCTG
GCCACGTAGTTTCTTCAGTTGCCTTTGAAGCTCGATAGCTTAACATCCAT
CGTATAACGTTAAATGAGCGTCAAAACAACGTCGTGTATAGACCTTTCCC
GAAAGCCACTTAAGTGTTAACTTCTATAAAATGTAAATTTTGATTAATCT
ATTATCACAGTTCAATTTGTTTTGGTCTAATGAGAAATCCCTGATAATTT
TGGTCCATTTGGTCTACTAGATCAAAAGATATTTCACTTTCGTTTTCTAC
AAAATTGCTCTTATTTTGTAAGCTTCCGATCATTTTTTTCCATACCCCGC
CTTGTTTTCATGTAAACATGATTTTTTATACCTTTATTGTGAAGCAATGA
GAAATGCTTTCAATTTGAAACTTTCACAAGAAAAAATCTTTTAGAAATTC
TAAGTTTTAATTTTGAGATGACGTCATAAAATTGATCACGTGATAGGTTA
TGGGAAAGGTCTATTAGTTTTAGTGGAATTGTTAGATGAGGTCCCCCCCC
CATCACCTATCAAATCACGCGATTTAAAATCTTAAATCACGAAATCATGA
ACTTGAAAAACGCCAATCACGCCATCACGAAAAGTTATAGCCCTGATAAA
TGTGGTGATGGCTTTTTTAGGAGGACTATAACTTTAGATCCGCATTGATT
GATCTGAATTCTTATTTGAAATCGTCGAAGTTTCAAAAAAGTATAAATTG
AAAATTTTTATGAAGTAGAAAAGAATTTTTTTCTTCTTCTTGATTTTCAA
AGTTGAAAATACTTCCCGTAGGTTAAATCATTCAATTCAAAATGACCCTT
CAAACCTGGTATTAATTTGAATGGTATTTTTATCGCATTAAGTACGATTT
TTTTTAAACAGACTGTGAACAGACTTCAGAAAATAGAAAATTTCAAATGA
GCACCACCACCCCTACTTGTGAATTTTTTTATAAGGGCAGGTATTTGACC
CTTCTAGAAGCTATGGTGAGAATTTTAAGCTAAGAACTTATTAGATGCAG
GTTATTGATATTTTGTTTGATAAGAAGGATTTTAAGGGAGGTAGTGGAAT
GCGGTTTTTCTTTTTTCTTTAGACGAGTAGAGGCTATTAACTAGAAGCTA
ACGTTTGTATGATAATGTTAACTGTTAGTGAAAGTCTTAGATTATGAGAA
AGAAAGGAACTGTTTATCTTAAATGACGTCATCATTTTTATGTTCATGTT
ATAGATGTTGGTTTCCATTCACCTTCACTCTGCCCACGTGACGGCAATCA
TGAAGACTCCTCCAAGGTATTCGCATTTGTGTTACCACGGACACTTCTTA
ATTAGCTCATTCCTTTACAAAAAGATTTTGATAATTGCCTTTATAACGTA
ATTAGGACTAGTGCCTTTATATTATGATTACCCCTTTCAAAAGATGTTAA
GTAGCTTGCTTTTATCGAGACTTTTTATTTTATGAACCTCTGATATTTTC
GTCGATAAAGATCTCTCACTTGTTTCGATAGAGAGATTTTGAACTGACTT
TCATTGATTGATATTTGTTTAGGTTGAGAAAGGGAATGAGGGACGTGTTG
GTATACAAACAGAAGGAGATGACACACCTCAAGGTACAATCTTCTCTTGC
TTTTCTCTGATCACAACCTTTCCACATAGTTTCATAAAGTCTTTTTGACT
TATTGTAGAGCAAAACCCAATCAGTAATGGTTAATGGTTTCCCCAGATAG
ATGGACCCTTTCGAATCTAAACTAAAAATATCTGCTTTTCTGATCTTACT
CGGGCTAAGCTAGCCAGGAAATAGACGTGAAAATATGCACTTTAGACTTC
ATTTTTAAACAATAATGGGAAGATTAGCTATCTCAATCAAAAATCTTTAT
AAGGACAGATTAGGGTTACCTGTCCTCCTTTTAAAGTCCATTTCGTATCA
TCTTGAAGACGAGAGCAGTCTTTAGATTGTTTCGCTCCATTTTAGACACT
TTTGTAATGACTTTTAGATGATTTTTTAATAGAATTTATTATGCCAGAAA
TTTTTAATGGGTTCTGATCTTAGTGTCCAACGTGCTTCGAATGATGAAGG
TTTGGTTTTGATTGTTTCATGAATAATGTTACATTTCGCATATAAATACA
CCCCTGTCTCATTTAACCCGTTGAGGGATAGGAGCAGCTGCTGGAATGAA
AATTTACCTGAAAAATAAAGTGTTGTTTCTTAACACTGCTGAGGTTTTCT
CTCACTAACAACCTTCCAAAAGTGTATTTAATGATTGATTTTATTGCTAA
TAAGAATTACTTCTACCCTAGGGTTGACGCAACCAAGCGTCATGGACAAG
CAACAAATCAGAAGTGTTGACGTTGAAGAGATTTTTGTTGAAGAGGAAGA
CGAGGAATACGAGTTTGTTGAAATCCTCTCTGAACCATCAATGAAATCAA
CACAAAATGTTGAACAGGGAAGATCAACTCAACCCTCCAAACATCCATTT
TCAACGGAGAGATTTCTCACTTCGCCAACCATCATTGTTGAGAATGTGGA
TGAGGAAGTTAAAGATGAAATGGTTGCCGAAGATGAAGAGAACGGTAGCA
GTGGTGATGAATTCGTCCTCATTGAAATCGTTGAACAATATCAACAACGA
CAATCAATGGATGTTCAATTAGACAACCTGTCAAGTGGCACCCAACTTGT
TGAGGAAATTGATAAAGGTACAGTAAAGTCGAACAACCATCAAACTTTCA
TTTAAAGTATCAAATGGACATAACCATAGCAATTTCCGTTAAAAAGTATA
GCCGGTCTGTGACTTCAAACTTCTATACATTAGCTAAACTTTTGATCAAT
GAATTTTATATAGTCGGCTTTCATCCTTATAATTTTCTTTTTTTTCTTCA
GAAGTTGAAGGCGAAGAAAGTGCGGAGACGGACGAGGTAAAAGATATTTT
CTTTTCTGTGGATCATTAGCTGATATAACAAATGTATGGCATGTGATGGG
ATACCTCTAGATAAGCATGATTCACTTATTCATTTAAAAAGGCTTCCTAA
AGAAGATAGATGAAAATATTAAGGCAATAGAAATGAATCGAAACATTCTG
TCAAGGATTATCCGATGATCCATTGCTATCAATCTTAAACTCAATCAATA
ACAATCTCTTCCTCGCTAGATGTATTTTCTTCTAAAAATAAATCAATCTA
ATAACGACTTATTTCCTCTTCAGGATAAACAATTGAACGAACTTGCTAAC
GAACGAGATGAAGAACTTGACAACCTCTTCCAACAACCATCAAGATCAAA
CCTTCAATCACCAGATGCAAACGCAAATATCTTTTTCACCAAACCTACCG
ATCGTCCCCCTACCATGTCCCCACAGGTGTGTTTCCATACAGCCAACTCA
TTCAGAGAGACAAGATTCACCTTATATATATATCAAAACAGTACCAAATT
GTACCTAGCACACTTTTTCTGAGTCTCTTTCTCGAAGAGAAAATTCCCCT
TTAAATTTTTCTCTAATGATTTAACGTGTCATACAGAACCACGAAAATAT
TGTCCCCTCAAAACCTTTAATCATACCCTCGCTATTCTTTACAGATGATG
GCCCGATCAATCAGCCCTTCATTGTTGTCTCCATTACCCAGTCCTGGACC
AAAAGAAGAGACGGCGAAAGTGTTTGTATTATCGAGCTACCAAGCAGAAG
TCATCCCGCCACGAGCCAAGACACCAGTGATAGAAGACTTCCAGACATCA
CAAAACGAGGTTGGCAAACTGATGTTGGCTCCAGAATCTTCTTATGAAAC
AGAGGAGTTGTCTCCATCCAAGCGACACTTAGACTACCCCATCGAGACAC
CCTCAAGAACCATCATGTCAGTCTCGACTATCGACATTAAGCCTGTTTAT
CAGACGACGCCTACCATTCAACTACCTACGAAGGACATGATTGTTATCAA
TGTTGATTTACCAAAACATAAAAGACGTTGGTCAACAGATCTCATTGTCA
ATGTAGTTCAAGAAGAGGGGGATTATCATCGGGTGGAGGATCGACACGTG
GTCTTGGTCTTTCCTGACACCACTTACGAAGAAGTGATCACCATCATGTT
CGTGGAGCGAGCCACACCCTCCATCAACGTCCTTTTCACACCTGTCAATG
TGGATATGGTGGATGTTAAAAGTGATGATGAAGGATCGATGTCACCTTTC
GAAGAAATCGTCAGCGAAGAAATTACTACCTTAGCGATGAGCATGCCAGA
CTTCTTGGATGATCTCCCAGAGACGTTAGTAGACGATCAGCTACAACCAG
AAAATCCACTTTCAAATTCTCTTCAGGTGAATCCGCCAGAAGATCAGCTG
CAACCAGCCAAAGAAGATTCAAATGATACCAAAGCACCAGATGCATTGAT
TCTTCCGAAACCACGAAAATTCATACCAACGACAAATTGGCCGAATGTTG
ACGAAGAGAAGCTGAAAAGTCCAACGTCACCTTCACCTCTCTCTCCTGGT
GATCGTATTCTTGAACAACCGAAATTCTCATTCATCAGACGAATCATCTA
TGGTGAAAGTCCAACTCTTCTAAACGACGAGGTTACTGAACAATCAGAAG
ATCCTCCCATGCTGGTGGGGAGTGAGAATTCATCGAAACCTCAACCAGAG
GTGAACACAATTAGACTGGGAGAAGATACTCAAGCAATACTGGAAAATGA
GTCCAATGAACCTTTCGAGATATTAACCAAGGAGCCCACGGTACTTTCTC
AATATGCATCGCAGCCAAAAGAAGAAGAACTAGATAGGGAACCTGTTTCA
GAATCGCCTGTTATTGTTGAAACAAACATTCGATCTGATATACAACAATC
AAAAGTTCCTGAGCTGCCTTTTCACGGAACTTCCACTTTTGACAAACCAG
AGAGAAAGGAAAAATCAGCGTCAATGGATCAAAGACCTTTTGAGCGAAAT
ACCCCCATCGAGATGATGGAACATCAAACAGTTATTGTAGACTCACTTCA
AATCACTCCAAAAACGCCACAAGTAGTAGAGGAGGGTCGAGTTCTCCAAG
ACTACAACGAGGAAAAATCTTTGCCAATTAGTGAGCCAAAAGAATTGATT
TCTGAAGATCTTGCCGAAGAAGCAAAGGTCCCAGATCCAGAATCAAACGT
CAAATTTGGTACATTATTGCCAGATGAGCAAGCAGATGATCGAACTACAC
CGAAGCCTTCCTATTACCAATTACTTAGTGATTCACCAGATGAACCAAGG
CGAAGAAGTCGCGTGTGGAGCAATTCCACCACAGACTCGGAATGTGATAT
CGTTTTGATCGAAATTGAACACATGTCTACTGATGATGAATTGGATGCGC
CGCGTGACGATGATCATCTTGTTACCACGGAACCAATCGACGAAGATAAT
ATCATCCCTGATCAAATGAAATCAGTTGAAAGTGAGCTTGACTTCTCATC
ATTGTATCAGGGAGATGAAACACCTAAATCGCCTGTCCTTCTTGGTCTAC
CAGTAGATTTGGATCTGTTACCCGAAACAAGCGTTGATGACAGTGATAAA
TCATCGCAAGATGAAGAACCAGAAGATAAGTATCTTCCAAAAAGGGATCG
AGTCTTTGAAGAATTTGAAGCTACAACAGAAACTCCGTTACAAAGTCAAC
CAAGCTATGACCTAGATGATCACTCACAGGAAGATCTACCAACAGTCAAA
TCTTTCACCAGGATACAAACAATTACAACAGAAGATACTGAACCAGTCGA
AN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013791XLOC_013791Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024554-exon-sc0000502-1575043694:161404..161447TCONS_00024554-exon-sc0000502-1575043694:161404..161447Clytia hemisphaericaexon
TCONS_00024554-exon-sc0000502-1575043694:159982..160043TCONS_00024554-exon-sc0000502-1575043694:159982..160043Clytia hemisphaericaexon
TCONS_00024554-exon-sc0000502-1575043694:159665..159725TCONS_00024554-exon-sc0000502-1575043694:159665..159725Clytia hemisphaericaexon
TCONS_00024554-exon-sc0000502-1575043694:158581..158976TCONS_00024554-exon-sc0000502-1575043694:158581..158976Clytia hemisphaericaexon
TCONS_00024554-exon-sc0000502-1575043694:158362..158396TCONS_00024554-exon-sc0000502-1575043694:158362..158396Clytia hemisphaericaexon
TCONS_00024554-exon-sc0000502-1575043694:157922..158074TCONS_00024554-exon-sc0000502-1575043694:157922..158074Clytia hemisphaericaexon
TCONS_00024554-exon-sc0000502-1575043694:155546..157703TCONS_00024554-exon-sc0000502-1575043694:155546..157703Clytia hemisphaericaexon
TCONS_00024554-exon-sc0000502-1510915933:161404..161447TCONS_00024554-exon-sc0000502-1510915933:161404..161447Clytia hemisphaericaexon
TCONS_00024554-exon-sc0000502-1510915933:159982..160043TCONS_00024554-exon-sc0000502-1510915933:159982..160043Clytia hemisphaericaexon
TCONS_00024554-exon-sc0000502-1510915933:159665..159725TCONS_00024554-exon-sc0000502-1510915933:159665..159725Clytia hemisphaericaexon
TCONS_00024554-exon-sc0000502-1510915933:158581..158976TCONS_00024554-exon-sc0000502-1510915933:158581..158976Clytia hemisphaericaexon
TCONS_00024554-exon-sc0000502-1510915933:158362..158396TCONS_00024554-exon-sc0000502-1510915933:158362..158396Clytia hemisphaericaexon
TCONS_00024554-exon-sc0000502-1510915933:157922..158074TCONS_00024554-exon-sc0000502-1510915933:157922..158074Clytia hemisphaericaexon
TCONS_00024554-exon-sc0000502-1510915933:155546..157703TCONS_00024554-exon-sc0000502-1510915933:155546..157703Clytia hemisphaericaexon
TCONS_00024554-exon-sc0000502-1491911889:161404..161447TCONS_00024554-exon-sc0000502-1491911889:161404..161447Clytia hemisphaericaexon
TCONS_00024554-exon-sc0000502-1491911889:159982..160043TCONS_00024554-exon-sc0000502-1491911889:159982..160043Clytia hemisphaericaexon
TCONS_00024554-exon-sc0000502-1491911889:159665..159725TCONS_00024554-exon-sc0000502-1491911889:159665..159725Clytia hemisphaericaexon
TCONS_00024554-exon-sc0000502-1491911889:158581..158976TCONS_00024554-exon-sc0000502-1491911889:158581..158976Clytia hemisphaericaexon
TCONS_00024554-exon-sc0000502-1491911889:158362..158396TCONS_00024554-exon-sc0000502-1491911889:158362..158396Clytia hemisphaericaexon
TCONS_00024554-exon-sc0000502-1491911889:157922..158074TCONS_00024554-exon-sc0000502-1491911889:157922..158074Clytia hemisphaericaexon
TCONS_00024554-exon-sc0000502-1491911889:155546..157703TCONS_00024554-exon-sc0000502-1491911889:155546..157703Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000502supercontigsc0000502:155546..161447 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.36018	0	0	0	0	0.334561	0	0.213934	4.43225	3.13001	0	0.137649	6.20842e-09	0.819606	12.398	15.2334	0.315008	0.72005	0	0.376075	0.413388	0.89449	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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