TCONS_00024550 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024550
Unique NameTCONS_00024550
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1186

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024550 ID=TCONS_00024550|Name=TCONS_00024550|organism=Clytia hemisphaerica|type=transcript|length=1186bp
CTGACTCACTCAAACACCCACACACCCCCAcataatttagcagactctgt
CATGGTTTGCATTTTGTTTTTCCAAACAaatcaacaaatcaaataaCCTA
AGGTATTGCATTTGATGACGCTAAGGCTGGCAAATCTCAAACTTGTCCTG
GTTGAAACTGACACACTTATTAAGGATACCCTAGGGACAATATTCTTTCA
TTCCCTTTCAATATACATATGTGCCAGCAGGCTATTGATTAATACCCctt
ctttaaaactttaatgGTTTATTAATTCTAGATTAAATTATTTAAAGGAA
ATTATGTCGGCCAGTCGAGTTCGAGTCACAAATGTGGTTGTGCTGAACAA
TCCCTGCAAGTTTTTTGATCCATTTCAATTCCAGATCACCTTCGAATGTC
TTGAAATCAGTGAtgACTTGGAATGGAAGCTGATTTATGTTGGTTCGGCA
GAAAACAATGAGTACGATCAAGTATTGGAGACTGTTCTCGTTGGCGACCT
GCAACCTGGAAGACATATGTTCGTTTTTCAAGCAGAACCACCGAAACCCG
ATTTGATCCCACAAACGGACATTGTTGGAGTGACGGTAATTCTGTTGACG
TGCTCCTTCAAAGGGAAAGAGTTTATCCGCATTGGCTACTACGTCAACAC
TGATTATGCTGACCCTGAGATGCGAGAAAATCCACCTCAACAACAAGTCA
TCCTTGAACAGCTTCAGCGCAACATTTTGGCCAGTCAACCACGTGTCACG
AAGTTTCACGTCCCCTGGGAATAGAAAGACATTCAGTGTCTACAGCATCT
GATTGATGGGTGGCTGGTGTGTGAAGAAAGGCGTATTTGAGCCTGTAAAG
ATATGCGACGTGTTCATTTCACAACCAAATTGATTCTTAGTCAAGgagaa
aaatcatattttgaaaGTGTGATGTTTTTTAAAACTATTATCATTTGTCT
AGAAACCCGGTATTTTTTTCTGAGATTGGAATTGACGTGACGGACAACAT
TCCTTCATTTTTGAATGGAGTAGTCCAAGAAGGAGTTAGTGACCGAGAAT
CCACTTCGTAAAGAATATTGCGTTTtctaagagaatttttttatttgcac
GACAACGCCCTCACAGGGAATAACGATCGATGTTGAAGACATTTTTTAAG
ACATAGAAGTTCCACtgatattgaattttgaagatC
Run BLAST on NCBI

protein sequence of TCONS_00024550-protein

>TCONS_00024550-protein ID=TCONS_00024550-protein|Name=TCONS_00024550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MSASRVRVTNVVVLNNPCKFFDPFQFQITFECLEISDDLEWKLIYVGSAE
NNEYDQVLETVLVGDLQPGRHMFVFQAEPPKPDLIPQTDIVGVTVILLTC
SFKGKEFIRIGYYVNTDYADPEMRENPPQQQVILEQLQRNILASQPRVTK
FHVPWE
Run BLAST on NCBI

transcript from alignment at sc0000502:123367..125295-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024550 ID=TCONS_00024550|Name=TCONS_00024550|organism=Clytia hemisphaerica|type=transcript|length=1929bp|location=Sequence derived from alignment at sc0000502:123367..125295- (Clytia hemisphaerica)
CTGACTCACTCAAACACCCACACACCCCCACATAATTTAGCAGACTCTGT
CATGGTTTGCATTTTGTTTTTCCAAACAAATCAACAAATCAAATAACCTA
AGGTATTGCATTTGATGACGCTAAGGCTGGCAAATCTCAAACTTGTCCTG
GTTGAAACTGACACACTTATTAAGGATACCCTAGGGACAATATTCTTTCA
TTCCCTTTCAATATACATATGTGCCAGCAGGCTATTGATTAATACCCCTT
CTTTAAAACTTTAATGGTTTATTAATTCTAGATTAAATTATTTAAAGGAA
ATTATGTCGGCCAGTCGAGTTCGAGTCACAAATGTGGTTGTGCTGAACAA
TCCCTGCAAGTTTTTTGATCCATTTCAATTCCAGATCACCTTCGAATGTC
TTGAAATCAGTGATGGTAAGTTTTATTTTTCGTTTGTTTGTACTCATTAA
ACTTTGTTTGAGACTTGAACAATTGAGCTTTCTTCATTCATGAGTGCAAG
GATTTAACCCCAACTAAAACTGAGACAACATCTTACATTATCCTCGACAC
TCAATGCATGATATATTAATATGCTCAGGTTATATATACGAAAACTTGCT
GTTCTTTAATACATAATTTTCTTTAAAAATGCAGACTTGGAATGGAAGCT
GATTTATGTTGGTTCGGCAGAAAACAATGAGTACGATCAAGTATTGGAGA
CTGTTCTCGTTGGCGACCTGCAACCTGGAAGACATATGTTCGTTTTTCAA
GTAAGTCATTTAGTACGAAGCTTTTCCCTCATAATGAAATTTTGAATTCC
TATCCAATGTTTAGTAAGCAATAATTTGCGCTGTTTTTTTCTGATGATTT
GTAAAAAGAAATAATAGGAAAAAGGATTTGAATCCCCTATGTATGGTTTA
AGCTCTTGCAGTAGACTTCTTTGGTGTTCGACTTGATTCTTTTTTTTTCA
CCGAGTACGTTTGCGAAGAAAATTGAATTCGTTACATTAGCTGGAACTAT
TAACGGACGGAATGAAAAATGTACAGACGTATAATGAATTTCTATTTTAC
AGGCAGAACCACCGAAACCCGATTTGATCCCACAAACGGACATTGTTGGA
GTGACGGTAATTCTGTTGACGTGCTCCTTCAAAGGGAAAGAGTTTATCCG
CATTGGCTACTACGTCAACACTGATTATGCTGACCCTGAGATGCGAGAAA
ATCCACCTCAACAACAAGTCATCCTTGAACAGGTCAGTCTACTATGAGAT
CATGATTTCCATCCCATTCTTCTAAGCTATCACACAGTGTATTTATTATT
GATTGTCATCTGTGCATCGATCTGTTCAAAATGTTAACACACCTATATCT
CTTATATTCGTTTCAAAACCGTCTAATTAATTGAAAGATGGGGTTTCCAG
GGGAAGAAAAACACATTGTTCATTTTATTCGAATGTTATGTCTTTTGTTT
TCAGCTTCAGCGCAACATTTTGGCCAGTCAACCACGTGTCACGAAGTTTC
ACGTCCCCTGGGAATAGAAAGACATTCAGTGTCTACAGCATCTGATTGAT
GGGTGGCTGGTGTGTGAAGAAAGGCGTATTTGAGCCTGTAAAGATATGCG
ACGTGTTCATTTCACAACCAAATTGATTCTTAGTCAAGGAGAAAAATCAT
ATTTTGAAAGTGTGATGTTTTTTAAAACTATTATCATTTGTCTAGAAACC
CGGTATTTTTTTCTGAGATTGGAATTGACGTGACGGACAACATTCCTTCA
TTTTTGAATGGAGTAGTCCAAGAAGGAGTTAGTGACCGAGAATCCACTTC
GTAAAGAATATTGCGTTTTCTAAGAGAATTTTTTTATTTGCACGACAACG
CCCTCACAGGGAATAACGATCGATGTTGAAGACATTTTTTAAGACATAGA
AGTTCCACTGATATTGAATTTTGAAGATC

Coding sequence (CDS) from alignment at sc0000502:123367..125295-

>TCONS_00024550 ID=TCONS_00024550|Name=TCONS_00024550|organism=Clytia hemisphaerica|type=CDS|length=1884bp|location=Sequence derived from alignment at sc0000502:123367..125295- (Clytia hemisphaerica)
CTTCAGCGCAACATTTTGGCCAGTCAACCACGTGTCACGAAGTTTCACGT
CCCCTGGGAATAGGCAGAACCACCGAAACCCGATTTGATCCCACAAACGG
ACATTGTTGGAGTGACGGTAATTCTGTTGACGTGCTCCTTCAAAGGGAAA
GAGTTTATCCGCATTGGCTACTACGTCAACACTGATTATGCTGACCCTGA
GATGCGAGAAAATCCACCTCAACAACAAGTCATCCTTGAACAGACTTGGA
ATGGAAGCTGATTTATGTTGGTTCGGCAGAAAACAATGAGTACGATCAAG
TATTGGAGACTGTTCTCGTTGGCGACCTGCAACCTGGAAGACATATGTTC
GTTTTTCAAATGTCGGCCAGTCGAGTTCGAGTCACAAATGTGGTTGTGCT
GAACAATCCCTGCAAGTTTTTTGATCCATTTCAATTCCAGATCACCTTCG
AATGTCTTGAAATCAGTGATGCTTCAGCGCAACATTTTGGCCAGTCAACC
ACGTGTCACGAAGTTTCACGTCCCCTGGGAATAGGCAGAACCACCGAAAC
CCGATTTGATCCCACAAACGGACATTGTTGGAGTGACGGTAATTCTGTTG
ACGTGCTCCTTCAAAGGGAAAGAGTTTATCCGCATTGGCTACTACGTCAA
CACTGATTATGCTGACCCTGAGATGCGAGAAAATCCACCTCAACAACAAG
TCATCCTTGAACAGACTTGGAATGGAAGCTGATTTATGTTGGTTCGGCAG
AAAACAATGAGTACGATCAAGTATTGGAGACTGTTCTCGTTGGCGACCTG
CAACCTGGAAGACATATGTTCGTTTTTCAAATGTCGGCCAGTCGAGTTCG
AGTCACAAATGTGGTTGTGCTGAACAATCCCTGCAAGTTTTTTGATCCAT
TTCAATTCCAGATCACCTTCGAATGTCTTGAAATCAGTGATGCTTCAGCG
CAACATTTTGGCCAGTCAACCACGTGTCACGAAGTTTCACGTCCCCTGGG
AATAGGCAGAACCACCGAAACCCGATTTGATCCCACAAACGGACATTGTT
GGAGTGACGGTAATTCTGTTGACGTGCTCCTTCAAAGGGAAAGAGTTTAT
CCGCATTGGCTACTACGTCAACACTGATTATGCTGACCCTGAGATGCGAG
AAAATCCACCTCAACAACAAGTCATCCTTGAACAGACTTGGAATGGAAGC
TGATTTATGTTGGTTCGGCAGAAAACAATGAGTACGATCAAGTATTGGAG
ACTGTTCTCGTTGGCGACCTGCAACCTGGAAGACATATGTTCGTTTTTCA
AATGTCGGCCAGTCGAGTTCGAGTCACAAATGTGGTTGTGCTGAACAATC
CCTGCAAGTTTTTTGATCCATTTCAATTCCAGATCACCTTCGAATGTCTT
GAAATCAGTGATGCTTCAGCGCAACATTTTGGCCAGTCAACCACGTGTCA
CGAAGTTTCACGTCCCCTGGGAATAGGCAGAACCACCGAAACCCGATTTG
ATCCCACAAACGGACATTGTTGGAGTGACGGTAATTCTGTTGACGTGCTC
CTTCAAAGGGAAAGAGTTTATCCGCATTGGCTACTACGTCAACACTGATT
ATGCTGACCCTGAGATGCGAGAAAATCCACCTCAACAACAAGTCATCCTT
GAACAGACTTGGAATGGAAGCTGATTTATGTTGGTTCGGCAGAAAACAAT
GAGTACGATCAAGTATTGGAGACTGTTCTCGTTGGCGACCTGCAACCTGG
AAGACATATGTTCGTTTTTCAAATGTCGGCCAGTCGAGTTCGAGTCACAA
ATGTGGTTGTGCTGAACAATCCCTGCAAGTTTTTTGATCCATTTCAATTC
CAGATCACCTTCGAATGTCTTGAAATCAGTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013789XLOC_013789Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024550-exon-sc0000502-1575043694:124881..125295TCONS_00024550-exon-sc0000502-1575043694:124881..125295Clytia hemisphaericaexon
TCONS_00024550-exon-sc0000502-1575043694:124546..124661TCONS_00024550-exon-sc0000502-1575043694:124546..124661Clytia hemisphaericaexon
TCONS_00024550-exon-sc0000502-1575043694:124064..124243TCONS_00024550-exon-sc0000502-1575043694:124064..124243Clytia hemisphaericaexon
TCONS_00024550-exon-sc0000502-1575043694:123367..123841TCONS_00024550-exon-sc0000502-1575043694:123367..123841Clytia hemisphaericaexon
TCONS_00024550-exon-sc0000502-1510915933:124881..125295TCONS_00024550-exon-sc0000502-1510915933:124881..125295Clytia hemisphaericaexon
TCONS_00024550-exon-sc0000502-1510915933:124546..124661TCONS_00024550-exon-sc0000502-1510915933:124546..124661Clytia hemisphaericaexon
TCONS_00024550-exon-sc0000502-1510915933:124064..124243TCONS_00024550-exon-sc0000502-1510915933:124064..124243Clytia hemisphaericaexon
TCONS_00024550-exon-sc0000502-1510915933:123367..123841TCONS_00024550-exon-sc0000502-1510915933:123367..123841Clytia hemisphaericaexon
TCONS_00024550-exon-sc0000502-1491911889:124881..125295TCONS_00024550-exon-sc0000502-1491911889:124881..125295Clytia hemisphaericaexon
TCONS_00024550-exon-sc0000502-1491911889:124546..124661TCONS_00024550-exon-sc0000502-1491911889:124546..124661Clytia hemisphaericaexon
TCONS_00024550-exon-sc0000502-1491911889:124064..124243TCONS_00024550-exon-sc0000502-1491911889:124064..124243Clytia hemisphaericaexon
TCONS_00024550-exon-sc0000502-1491911889:123367..123841TCONS_00024550-exon-sc0000502-1491911889:123367..123841Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024550-proteinTCONS_00024550-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000502supercontigsc0000502:123367..125295 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
109.266	104.816	192.132	193.603	13.2219	10.8351	16.7603	17.9198	25.0616	20.0508	19.793	17.8963	16.9054	20.4156	19.0732	20.6898	35.547	33.864	11.1944	12.8856	22.5402	22.7593	40.7197	39.5941	42.8474	43.7379	12.9958	9.67141	14.7515	17.1237
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006818ASF1-like
Vocabulary: Biological Process
TermDefinition
GO:0006333chromatin assembly or disassembly
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006333 chromatin assembly or disassembly
cellular_component GO:0005634 nucleus
Blast
[Close]
BLAST of TCONS_00024550 vs. Swiss-Prot (Human)
Match: ASF1A (Histone chaperone ASF1A OS=Homo sapiens GN=ASF1A PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.644e-61
Identity = 91/141 (64.54%), Postives = 117/141 (82.98%), Query Frame = 1 
Query:  352 PCKFFDPFQFQITFECLE-ISDDLEWKLIYVGSAENNEYDQVLETVLVGDLQPGRHMFVFQAEPPKPDLIPQTDIVGVTVILLTCSFKGKEFIRIGYYVNTDYADPEMRENPPQQQVILEQLQRNILASQPRVTKFHVPWE 771
            P  F++PFQF+ITFEC+E +S+DLEWK+IYVGSAE+ EYDQVL++VLVG +  GRHMFVFQA+ P P LIP  D VGVTV+L+TC+++G+EFIR+GYYVN +Y + E+RENPP +     +LQRNILAS PRVT+FH+ WE
Sbjct:   15 PSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTETELRENPPVKP-DFSKLQRNILASNPRVTRFHINWE 154
The following BLAST results are available for this feature:
BLAST of TCONS_00024550 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASF1A1.644e-6164.54Histone chaperone ASF1A OS=Homo sapiens GN=ASF1A P... [more]
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