TCONS_00024533 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024533
Unique NameTCONS_00024533
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1819

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024533 ID=TCONS_00024533|Name=TCONS_00024533|organism=Clytia hemisphaerica|type=transcript|length=1819bp
tattaccatttttaAAGAGCAATGGtatcttttaagaaaaaagaataGGA
AATGGCTGATATCATTTGCTTTTCACTGCAGTGCAAGCTAGATAGACGGG
TAGACACGGTACACGAGAATAtcaaaaaagcatcaaaatgaaaatccacc
TGAAACGTAGTCTTTTAATCATCTTCTTTATCAACATTAATGTTTTGTTA
GGGCAAAGTATTACGACAACGACGACTGCGGCTCCTACTACGACAACAAC
AGCGGTTCCAACTACGACCACTACAACGGCCGCTCCTACtacgacaacaa
caacagcagctCCTACTACGACCACGACAACAGCCGCTCCTACTACGACA
ACGACAACGGCCGCTCCTACGACGACCACGACAACAGCCGCTCCTACTAC
GACCACGACAACGGCCGCTCCTACtacgacaacaacaacagcagctCCTA
CTACGACCACGACAACAGCCGCTCCTACTACGACAACGACAACGGCCGCT
CCTACGACGACCACGACAACAGCTGCTCCAACGACGACAACAACAACGGC
CGCTCCTACTACGACCACGACAACGGCCGCTCCTACTACGACCACGACAA
CAGCCGCTCCTACTACGACAGCAACAACGACCGCTCCAACTACGACCACG
ACAACGACCGCTCCTACGACGACCACGACAATAGCTGCtccaactacaac
aacaacaacggcCGCTCCTACGACGACCACGACAACAGCCGCTCCTACGA
CGACCACGACAACAGTAGCTCCTACAACGACCACGACAACAGCGTCACCT
ACTAAGACCACTACAACGACCGCTCCTACTACAACCACAACAACAGCCGC
TCCTACTACGACCACGACAACAGCGGTACCTGCTACGACCACTACAACTA
CCGCTCTTACTACGACCACGACAACGGCCTCTCCTACGACGACCACGACA
ACAGCCGCTCCAACTACGACCACGACAACAGCGTCACCTACCACGACCAC
GACAACAGCGGCACCTACTACGACCACGACAACAGCCGCTCCTAAGACGA
CCACGACAACAGCCGCTCCTACTACGACAACAACAATGGCCGCTCCAACT
ACGACCACGACAACGACCGCTCCTACGACGACCACGACAATAGCTGCTCC
AACTACGACAACAACGGCCGCTCCTACTACGACCACGACAACGGCCGTTA
CTACGACGACTACAACAACATCCGCTCCAACTACGACCACGACAACAGCC
GCTCCTACTACGACAACAACAATGGCCGCTCCAACTACGACCACGACAAC
GACCGCTCCTACGACGACCACGACAATAGCTGCTCCAACTACGACAACAA
CGGCCGCTCCTACTACGACCACGACAACGGCCGTTACTACGACGACTACA
ACAACATCCGCTCCAACTACGACCACGACAACAGCGTCACCTACTACGAC
CACAACAACGACCGCTCCTACTACAACCACTACAACGACTGTCCCTACTA
CGACCACAACAACGGCGGCACCTATTACAACCACGACAACGACCGCCCCT
ACTACGACCACTACAACTGCCGCTCCTACTACGACCACGACTACAGCCGC
TCCTACGACAACTGCGACAGGTCCAACAGTCAAACCAACAAAAAAACCAT
CGCATAAAGGAATCATAATCGCCTGTATTATTGGTGCAATTGTGCTTGTG
CTTATTTTAATCATTGCAGTGATCATTTACTGCTTAAAAAGGGATGAGCA
TCGGAGAGCAAGCCCACCATCGTTACCTTGACAGGAGCATGCACTGGATG
TATAAAACACAGAGTGGTT
Run BLAST on NCBI

protein sequence of TCONS_00024533-protein

>TCONS_00024533-protein ID=TCONS_00024533-protein|Name=TCONS_00024533-protein|organism=Clytia hemisphaerica|type=polypeptide|length=547bp
MKIHLKRSLLIIFFININVLLGQSITTTTTAAPTTTTTAVPTTTTTTAAP
TTTTTTAAPTTTTTTAAPTTTTTTAAPTTTTTTAAPTTTTTTAAPTTTTT
TAAPTTTTTTAAPTTTTTTAAPTTTTTTAAPTTTTTTAAPTTTTTTAAPT
TTTTTAAPTTTATTTAPTTTTTTTAPTTTTTIAAPTTTTTTAAPTTTTTT
AAPTTTTTTVAPTTTTTTASPTKTTTTTAPTTTTTTAAPTTTTTTAVPAT
TTTTTALTTTTTTASPTTTTTTAAPTTTTTTASPTTTTTTAAPTTTTTTA
APKTTTTTAAPTTTTTMAAPTTTTTTTAPTTTTTIAAPTTTTTAAPTTTT
TTAVTTTTTTTSAPTTTTTTAAPTTTTTMAAPTTTTTTTAPTTTTTIAAP
TTTTTAAPTTTTTTAVTTTTTTTSAPTTTTTTASPTTTTTTTAPTTTTTT
TVPTTTTTTAAPITTTTTTAPTTTTTTAAPTTTTTTAAPTTTATGPTVKP
TKKPSHKGIIIACIIGAIVLVLILIIAVIIYCLKRDEHRRASPPSLP
Run BLAST on NCBI

transcript from alignment at sc0000502:119685..122098+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024533 ID=TCONS_00024533|Name=TCONS_00024533|organism=Clytia hemisphaerica|type=transcript|length=2414bp|location=Sequence derived from alignment at sc0000502:119685..122098+ (Clytia hemisphaerica)
tattaccatttttaAAGAGCAATGGtatcttttaagaaaaaagaataGGA
AATGGCTGATATCATTTGCTTTTCACTGCAGTGCAAGCTAGATAGACGGG
TAGACACGGTACACGAGAATAtcaaaaaagcatcaaaatgaaaatccacc
TGAAACGTAGTCTTTTAATCATCTTCTTTATCAACATTAATGTTTTGTTA
GGGTGAGTATTTTCTTTCTTCATGGAAAGCTCACGCTACTAAAGCGATTT
CAAACTAGAAATAAAATTTGAGGCTTTGTCGGGTCTTAGCGACGTTATGT
GTCTGCTATCTAACAGTTTTCTAAATAGAAGATTAAGGGTTCATATATAT
AACTTTGGATTAAGGCTTTTAAATATgtaagaaaataacaataggttTGC
CAAAACATTTTGATAAGATATAAAGCACGTTGAAAAATCattatatcaat
ttttcaatttatatgAAGGCAAAGTATTACGACAACGACGACTGCGGCTC
CTACTACGACAACAACAGCGGTTCCAACTACGACCACTACAACGGCCGCT
CCTACtacgacaacaacaacagcagctCCTACTACGACCACGACAACAGC
CGCTCCTACTACGACAACGACAACGGCCGCTCCTACGACGACCACGACAA
CAGCCGCTCCTACTACGACCACGACAACGGCCGCTCCTACtacgacaaca
acaacagcagctCCTACTACGACCACGACAACAGCCGCTCCTACTACGAC
AACGACAACGGCCGCTCCTACGACGACCACGACAACAGCTGCTCCAACGA
CGACAACAACAACGGCCGCTCCTACTACGACCACGACAACGGCCGCTCCT
ACTACGACCACGACAACAGCCGCTCCTACTACGACAGCAACAACGACCGC
TCCAACTACGACCACGACAACGACCGCTCCTACGACGACCACGACAATAG
CTGCtccaactacaacaacaacaacggcCGCTCCTACGACGACCACGACA
ACAGCCGCTCCTACGACGACCACGACAACAGTAGCTCCTACAACGACCAC
GACAACAGCGTCACCTACTAAGACCACTACAACGACCGCTCCTACTACAA
CCACAACAACAGCCGCTCCTACTACGACCACGACAACAGCGGTACCTGCT
ACGACCACTACAACTACCGCTCTTACTACGACCACGACAACGGCCTCTCC
TACGACGACCACGACAACAGCCGCTCCAACTACGACCACGACAACAGCGT
CACCTACCACGACCACGACAACAGCGGCACCTACTACGACCACGACAACA
GCCGCTCCTAAGACGACCACGACAACAGCCGCTCCTACTACGACAACAAC
AATGGCCGCTCCAACTACGACCACGACAACGACCGCTCCTACGACGACCA
CGACAATAGCTGCTCCAACTACGACAACAACGGCCGCTCCTACTACGACC
ACGACAACGGCCGTTACTACGACGACTACAACAACATCCGCTCCAACTAC
GACCACGACAACAGCCGCTCCTACTACGACAACAACAATGGCCGCTCCAA
CTACGACCACGACAACGACCGCTCCTACGACGACCACGACAATAGCTGCT
CCAACTACGACAACAACGGCCGCTCCTACTACGACCACGACAACGGCCGT
TACTACGACGACTACAACAACATCCGCTCCAACTACGACCACGACAACAG
CGTCACCTACTACGACCACAACAACGACCGCTCCTACTACAACCACTACA
ACGACTGTCCCTACTACGACCACAACAACGGCGGCACCTATTACAACCAC
GACAACGACCGCCCCTACTACGACCACTACAACTGCCGCTCCTACTACGA
CCACGACTACAGCCGCTCCTACGACAACTGCGACAGGTCCAACAGTCAAA
CCAACAAAAAAACCATCGCATAAAGGAATCATAATCGCCTGTATTATTGG
TGCAATTGTGCTTGTGCTTATTTTAATCATTGCAGTGATCATTTACTGCT
TAAAAAGGTAATATTTCCATCTCTTCTCGAAAGAAGAACGCATCTTTATA
TGGTTTTTAGACGTCCAGAATTTCGGTGTTTTATAGTAGAAAAGAATCAA
TAACTtttacagtggaacctctaattagcggacaccatcggggaaagggg
ttagtgtccgctaattagaagtgtccgccttttagaaacttttttaatga
ggatttgactaggaaacggccggggaaaattaaattgtccgctaatcaga
ggtgtcccctttttagagtgtccgttaattagaggttttactgtagtAAC
TTTTTCTGATGTGATGTCTTTTCTTGTATTCCGTAGGGATGAGCATCGGA
GAGCAAGCCCACCATCGTTACCTTGACAGGAGCATGCACTGGATGTATAA
AACACAGAGTGGTT

Coding sequence (CDS) from alignment at sc0000502:119685..122098+

>TCONS_00024533 ID=TCONS_00024533|Name=TCONS_00024533|organism=Clytia hemisphaerica|type=CDS|length=4932bp|location=Sequence derived from alignment at sc0000502:119685..122098+ (Clytia hemisphaerica)
atgaaaatccaccTGAAACGTAGTCTTTTAATCATCTTCTTTATCAACAT
TAATGTTTTGTTAGGGCAAAGTATTACGACAACGACGACTGCGGCTCCTA
CTACGACAACAACAGCGGTTCCAACTACGACCACTACAACGGCCGCTCCT
ACtacgacaacaacaacagcagctCCTACTACGACCACGACAACAGCCGC
TCCTACTACGACAACGACAACGGCCGCTCCTACGACGACCACGACAACAG
CCGCTCCTACTACGACCACGACAACGGCCGCTCCTACtacgacaacaaca
acagcagctCCTACTACGACCACGACAACAGCCGCTCCTACTACGACAAC
GACAACGGCCGCTCCTACGACGACCACGACAACAGCTGCTCCAACGACGA
CAACAACAACGGCCGCTCCTACTACGACCACGACAACGGCCGCTCCTACT
ACGACCACGACAACAGCCGCTCCTACTACGACAGCAACAACGACCGCTCC
AACTACGACCACGACAACGACCGCTCCTACGACGACCACGACAATAGCTG
CtccaactacaacaacaacaacggcCGCTCCTACGACGACCACGACAACA
GCCGCTCCTACGACGACCACGACAACAGTAGCTCCTACAACGACCACGAC
AACAGCGTCACCTACTAAGACCACTACAACGACCGCTCCTACTACAACCA
CAACAACAGCCGCTCCTACTACGACCACGACAACAGCGGTACCTGCTACG
ACCACTACAACTACCGCTCTTACTACGACCACGACAACGGCCTCTCCTAC
GACGACCACGACAACAGCCGCTCCAACTACGACCACGACAACAGCGTCAC
CTACCACGACCACGACAACAGCGGCACCTACTACGACCACGACAACAGCC
GCTCCTAAGACGACCACGACAACAGCCGCTCCTACTACGACAACAACAAT
GGCCGCTCCAACTACGACCACGACAACGACCGCTCCTACGACGACCACGA
CAATAGCTGCTCCAACTACGACAACAACGGCCGCTCCTACTACGACCACG
ACAACGGCCGTTACTACGACGACTACAACAACATCCGCTCCAACTACGAC
CACGACAACAGCCGCTCCTACTACGACAACAACAATGGCCGCTCCAACTA
CGACCACGACAACGACCGCTCCTACGACGACCACGACAATAGCTGCTCCA
ACTACGACAACAACGGCCGCTCCTACTACGACCACGACAACGGCCGTTAC
TACGACGACTACAACAACATCCGCTCCAACTACGACCACGACAACAGCGT
CACCTACTACGACCACAACAACGACCGCTCCTACTACAACCACTACAACG
ACTGTCCCTACTACGACCACAACAACGGCGGCACCTATTACAACCACGAC
AACGACCGCCCCTACTACGACCACTACAACTGCCGCTCCTACTACGACCA
CGACTACAGCCGCTCCTACGACAACTGCGACAGGTCCAACAGTCAAACCA
ACAAAAAAACCATCGCATAAAGGAATCATAATCGCCTGTATTATTGGTGC
AATTGTGCTTGTGCTTATTTTAATCATTGCAGTGATCATTTACTGCTTAA
AAAGGGATGAGCATCGGAGAGCAAGCCCACCATCGTTACCTTGAatgaaa
atccaccTGAAACGTAGTCTTTTAATCATCTTCTTTATCAACATTAATGT
TTTGTTAGGGCAAAGTATTACGACAACGACGACTGCGGCTCCTACTACGA
CAACAACAGCGGTTCCAACTACGACCACTACAACGGCCGCTCCTACtacg
acaacaacaacagcagctCCTACTACGACCACGACAACAGCCGCTCCTAC
TACGACAACGACAACGGCCGCTCCTACGACGACCACGACAACAGCCGCTC
CTACTACGACCACGACAACGGCCGCTCCTACtacgacaacaacaacagca
gctCCTACTACGACCACGACAACAGCCGCTCCTACTACGACAACGACAAC
GGCCGCTCCTACGACGACCACGACAACAGCTGCTCCAACGACGACAACAA
CAACGGCCGCTCCTACTACGACCACGACAACGGCCGCTCCTACTACGACC
ACGACAACAGCCGCTCCTACTACGACAGCAACAACGACCGCTCCAACTAC
GACCACGACAACGACCGCTCCTACGACGACCACGACAATAGCTGCtccaa
ctacaacaacaacaacggcCGCTCCTACGACGACCACGACAACAGCCGCT
CCTACGACGACCACGACAACAGTAGCTCCTACAACGACCACGACAACAGC
GTCACCTACTAAGACCACTACAACGACCGCTCCTACTACAACCACAACAA
CAGCCGCTCCTACTACGACCACGACAACAGCGGTACCTGCTACGACCACT
ACAACTACCGCTCTTACTACGACCACGACAACGGCCTCTCCTACGACGAC
CACGACAACAGCCGCTCCAACTACGACCACGACAACAGCGTCACCTACCA
CGACCACGACAACAGCGGCACCTACTACGACCACGACAACAGCCGCTCCT
AAGACGACCACGACAACAGCCGCTCCTACTACGACAACAACAATGGCCGC
TCCAACTACGACCACGACAACGACCGCTCCTACGACGACCACGACAATAG
CTGCTCCAACTACGACAACAACGGCCGCTCCTACTACGACCACGACAACG
GCCGTTACTACGACGACTACAACAACATCCGCTCCAACTACGACCACGAC
AACAGCCGCTCCTACTACGACAACAACAATGGCCGCTCCAACTACGACCA
CGACAACGACCGCTCCTACGACGACCACGACAATAGCTGCTCCAACTACG
ACAACAACGGCCGCTCCTACTACGACCACGACAACGGCCGTTACTACGAC
GACTACAACAACATCCGCTCCAACTACGACCACGACAACAGCGTCACCTA
CTACGACCACAACAACGACCGCTCCTACTACAACCACTACAACGACTGTC
CCTACTACGACCACAACAACGGCGGCACCTATTACAACCACGACAACGAC
CGCCCCTACTACGACCACTACAACTGCCGCTCCTACTACGACCACGACTA
CAGCCGCTCCTACGACAACTGCGACAGGTCCAACAGTCAAACCAACAAAA
AAACCATCGCATAAAGGAATCATAATCGCCTGTATTATTGGTGCAATTGT
GCTTGTGCTTATTTTAATCATTGCAGTGATCATTTACTGCTTAAAAAGGG
ATGAGCATCGGAGAGCAAGCCCACCATCGTTACCTTGAatgaaaatccac
cTGAAACGTAGTCTTTTAATCATCTTCTTTATCAACATTAATGTTTTGTT
AGGGCAAAGTATTACGACAACGACGACTGCGGCTCCTACTACGACAACAA
CAGCGGTTCCAACTACGACCACTACAACGGCCGCTCCTACtacgacaaca
acaacagcagctCCTACTACGACCACGACAACAGCCGCTCCTACTACGAC
AACGACAACGGCCGCTCCTACGACGACCACGACAACAGCCGCTCCTACTA
CGACCACGACAACGGCCGCTCCTACtacgacaacaacaacagcagctCCT
ACTACGACCACGACAACAGCCGCTCCTACTACGACAACGACAACGGCCGC
TCCTACGACGACCACGACAACAGCTGCTCCAACGACGACAACAACAACGG
CCGCTCCTACTACGACCACGACAACGGCCGCTCCTACTACGACCACGACA
ACAGCCGCTCCTACTACGACAGCAACAACGACCGCTCCAACTACGACCAC
GACAACGACCGCTCCTACGACGACCACGACAATAGCTGCtccaactacaa
caacaacaacggcCGCTCCTACGACGACCACGACAACAGCCGCTCCTACG
ACGACCACGACAACAGTAGCTCCTACAACGACCACGACAACAGCGTCACC
TACTAAGACCACTACAACGACCGCTCCTACTACAACCACAACAACAGCCG
CTCCTACTACGACCACGACAACAGCGGTACCTGCTACGACCACTACAACT
ACCGCTCTTACTACGACCACGACAACGGCCTCTCCTACGACGACCACGAC
AACAGCCGCTCCAACTACGACCACGACAACAGCGTCACCTACCACGACCA
CGACAACAGCGGCACCTACTACGACCACGACAACAGCCGCTCCTAAGACG
ACCACGACAACAGCCGCTCCTACTACGACAACAACAATGGCCGCTCCAAC
TACGACCACGACAACGACCGCTCCTACGACGACCACGACAATAGCTGCTC
CAACTACGACAACAACGGCCGCTCCTACTACGACCACGACAACGGCCGTT
ACTACGACGACTACAACAACATCCGCTCCAACTACGACCACGACAACAGC
CGCTCCTACTACGACAACAACAATGGCCGCTCCAACTACGACCACGACAA
CGACCGCTCCTACGACGACCACGACAATAGCTGCTCCAACTACGACAACA
ACGGCCGCTCCTACTACGACCACGACAACGGCCGTTACTACGACGACTAC
AACAACATCCGCTCCAACTACGACCACGACAACAGCGTCACCTACTACGA
CCACAACAACGACCGCTCCTACTACAACCACTACAACGACTGTCCCTACT
ACGACCACAACAACGGCGGCACCTATTACAACCACGACAACGACCGCCCC
TACTACGACCACTACAACTGCCGCTCCTACTACGACCACGACTACAGCCG
CTCCTACGACAACTGCGACAGGTCCAACAGTCAAACCAACAAAAAAACCA
TCGCATAAAGGAATCATAATCGCCTGTATTATTGGTGCAATTGTGCTTGT
GCTTATTTTAATCATTGCAGTGATCATTTACTGCTTAAAAAGGGATGAGC
ATCGGAGAGCAAGCCCACCATCGTTACCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013782XLOC_013782Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024533-proteinTCONS_00024533-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024533-exon-sc0000502-1491911889:119685..119886TCONS_00024533-exon-sc0000502-1491911889:119685..119886Clytia hemisphaericaexon
TCONS_00024533-exon-sc0000502-1510915933:119685..119886TCONS_00024533-exon-sc0000502-1510915933:119685..119886Clytia hemisphaericaexon
TCONS_00024533-exon-sc0000502-1575043694:119685..119886TCONS_00024533-exon-sc0000502-1575043694:119685..119886Clytia hemisphaericaexon
TCONS_00024533-exon-sc0000502-1491911889:120153..121691TCONS_00024533-exon-sc0000502-1491911889:120153..121691Clytia hemisphaericaexon
TCONS_00024533-exon-sc0000502-1510915933:120153..121691TCONS_00024533-exon-sc0000502-1510915933:120153..121691Clytia hemisphaericaexon
TCONS_00024533-exon-sc0000502-1575043694:120153..121691TCONS_00024533-exon-sc0000502-1575043694:120153..121691Clytia hemisphaericaexon
TCONS_00024533-exon-sc0000502-1491911889:122021..122098TCONS_00024533-exon-sc0000502-1491911889:122021..122098Clytia hemisphaericaexon
TCONS_00024533-exon-sc0000502-1510915933:122021..122098TCONS_00024533-exon-sc0000502-1510915933:122021..122098Clytia hemisphaericaexon
TCONS_00024533-exon-sc0000502-1575043694:122021..122098TCONS_00024533-exon-sc0000502-1575043694:122021..122098Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000502supercontigsc0000502:119685..122098 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0661076	0.0243465	0.249501	0.164138	3.66993	3.05966	15.0561	14.0452	12.1868	16.9401	15.0412	20.123	0.0293107	0	0	0	9.48079	10.0503	0.0234246	0	51.9499	44.1849	66.6256	82.3286	96.794	64.2554	66.3485	73.6423	54.7713	31.605
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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