TCONS_00024532 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024532
Unique NameTCONS_00024532
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length865

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024532 ID=TCONS_00024532|Name=TCONS_00024532|organism=Clytia hemisphaerica|type=transcript|length=865bp
atttttgaaataacctGTCTAAAACGCGTAATTTCTTTCttgctattatg
tttttttgtaatcttcaagtcattttggatttttactagttattttcaat
ataaagatcaaatcaattttcaataaaaataaatggacaattaatctgtt
tgataatcctgtttaaaaagtagagtataatttttatcattttctctctA
CAGAAAGTCGAAAAACGTACCGCGAGCTCGGCGGTGGGAGCCGAAATATC
AATTCTGTGTAATGTCAAAGACGTGTGGAGAAAACTTATCACAAAATGAA
CGTCGTCTCATCAGAAGACCAAGAAATAAATGGTATTAAGAAAAAGAAGT
AAAGATAATTGTTCGACAacacaacaaaagaaacatCTTCAATGCTTCAA
TGAACGAAGAATCGGAGAACCCTCGGGAAAAGAGGCACGATATACAACTG
AAGGAGTAATTGTTTTACTTCTTTTATTAATTAGTTCATCATTTTTATAC
GAATACAATTTCTTGAACCGTAACCTAAatcttatttcttaaattcgaaa
aatgctttacaatgtcaaattttgtcagaaatatcccCAAACCCTATAAG
CTCCTTCTATACCACATCAATTATTgccattgttttaaaaattatatatc
atGATTTATTATCTTACATTATCTTATTGATTTATGTCATTTTATGTAAA
TAAGGCATACTTTAGATTTTTAGCACAAGAATTATAAGTAAATAGATATT
AATATGATTTCtttaatattgactttaattttaaagaagaaaatcatcca
agaatatttaataattcaatATCTTATCGAATTTAATCTCGCGTCTAATT
GTCGCTACAGTAACC
Run BLAST on NCBI

transcript from alignment at sc0000502:18910..19774+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024532 ID=TCONS_00024532|Name=TCONS_00024532|organism=Clytia hemisphaerica|type=transcript|length=865bp|location=Sequence derived from alignment at sc0000502:18910..19774+ (Clytia hemisphaerica)
atttttgaaataacctGTCTAAAACGCGTAATTTCTTTCttgctattatg
tttttttgtaatcttcaagtcattttggatttttactagttattttcaat
ataaagatcaaatcaattttcaataaaaataaatggacaattaatctgtt
tgataatcctgtttaaaaagtagagtataatttttatcattttctctctA
CAGAAAGTCGAAAAACGTACCGCGAGCTCGGCGGTGGGAGCCGAAATATC
AATTCTGTGTAATGTCAAAGACGTGTGGAGAAAACTTATCACAAAATGAA
CGTCGTCTCATCAGAAGACCAAGAAATAAATGGTATTAAGAAAAAGAAGT
AAAGATAATTGTTCGACAacacaacaaaagaaacatCTTCAATGCTTCAA
TGAACGAAGAATCGGAGAACCCTCGGGAAAAGAGGCACGATATACAACTG
AAGGAGTAATTGTTTTACTTCTTTTATTAATTAGTTCATCATTTTTATAC
GAATACAATTTCTTGAACCGTAACCTAAatcttatttcttaaattcgaaa
aatgctttacaatgtcaaattttgtcagaaatatcccCAAACCCTATAAG
CTCCTTCTATACCACATCAATTATTgccattgttttaaaaattatatatc
atGATTTATTATCTTACATTATCTTATTGATTTATGTCATTTTATGTAAA
TAAGGCATACTTTAGATTTTTAGCACAAGAATTATAAGTAAATAGATATT
AATATGATTTCtttaatattgactttaattttaaagaagaaaatcatcca
agaatatttaataattcaatATCTTATCGAATTTAATCTCGCGTCTAATT
GTCGCTACAGTAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013781XLOC_013781Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024532-exon-sc0000502-1491911889:18910..19774TCONS_00024532-exon-sc0000502-1491911889:18910..19774Clytia hemisphaericaexon
TCONS_00024532-exon-sc0000502-1510915933:18910..19774TCONS_00024532-exon-sc0000502-1510915933:18910..19774Clytia hemisphaericaexon
TCONS_00024532-exon-sc0000502-1575043694:18910..19774TCONS_00024532-exon-sc0000502-1575043694:18910..19774Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000502supercontigsc0000502:18910..19774 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.716198	0.383284	0.400967	0	1.01298	1.54313	1.81569	0	1.39451	1.64826	1.37922	3.0288	0.217096	0.344658	0	0.194218	0.29114	0	0	0.248797	0.0847277	0	0	0	0.290327	0	0.000149387	0	0.229217	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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