TCONS_00024521 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024521
Unique NameTCONS_00024521
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length765

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024521 ID=TCONS_00024521|Name=TCONS_00024521|organism=Clytia hemisphaerica|type=transcript|length=765bp
CTTGTAGAGATTTTATAAAGCACTAATTTGAGAAACGAAATACCAGAACA
TTATAAGTGAACTTTAAGAAGAATTAAATTACTCAAACTTTctgaaaacc
ttaaaaattaaaaaatgttgtgACTAGTTCGGCAAATTAGAGTAAGAAAA
AAGACCAATGGTGATCGAGGATGAAGAAATTCAAGAAGATTGATCAAAGT
TTAATTCCAGTTCAAAGTTAACGCATGACACTGAGGGCTAACTATTATCA
AAGGAATGGTAAAACTGCCTtatcacatccctgtctcagcgACCCGGTGT
AGTGTTTTCAGGAATATTTTCTAACGTTATGCCGTTGATTTGCTTTTAAA
CTATATACGCCAGCCCAATTTTAGAGccacgttcttataaaaaggttTGA
TGGTATATTTGTGAGACTATAAACCTCGAATCATTGGGACTAATTCCTGc
ctttatattttaaaaattaatccACAATACATTGAACAAACCTTTTCCAG
CCGAAGTTTTACTGTTCTTTCTTTTTGGAGGCATGTTTTAATGTTATAGC
GTTATGCTTTCCTACAATATTCTACCTATTTCGTGATCAAAAAGCTTCAC
ATTTATGATTCTTGATAatgtaaactttttgaaattaccgcgttaaatga
ttttttttatctgatgCATAACATCTTTCCTTAATTTTCGCAGTTTGCAT
TTGCATATATTATGTGATATCCTAATTCCCGAAAATTCTCGCTGGTAAGT
CGTTGACATTTCTNN
Run BLAST on NCBI

transcript from alignment at sc0000501:51047..51811

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024521 ID=TCONS_00024521|Name=TCONS_00024521|organism=Clytia hemisphaerica|type=transcript|length=765bp|location=Sequence derived from alignment at sc0000501:51047..51811 (Clytia hemisphaerica)
NNAGAAATGTCAACGACTTACCAGCGAGAATTTTCGGGAATTAGGATATC
ACATAATATATGCAAATGCAAACTGCGAAAATTAAGGAAAGATGTTATGc
atcagataaaaaaaatcatttaacgcggtaatttcaaaaagtttacatTA
TCAAGAATCATAAATGTGAAGCTTTTTGATCACGAAATAGGTAGAATATT
GTAGGAAAGCATAACGCTATAACATTAAAACATGCCTCCAAAAAGAAAGA
ACAGTAAAACTTCGGCTGGAAAAGGTTTGTTCAATGTATTGTggattaat
ttttaaaatataaaggCAGGAATTAGTCCCAATGATTCGAGGTTTATAGT
CTCACAAATATACCATCAaacctttttataagaacgtggCTCTAAAATTG
GGCTGGCGTATATAGTTTAAAAGCAAATCAACGGCATAACGTTAGAAAAT
ATTCCTGAAAACACTACACCGGGTcgctgagacagggatgtgataAGGCA
GTTTTACCATTCCTTTGATAATAGTTAGCCCTCAGTGTCATGCGTTAACT
TTGAACTGGAATTAAACTTTGATCAATCTTCTTGAATTTCTTCATCCTCG
ATCACCATTGGTCTTTTTTCTTACTCTAATTTGCCGAACTAGTcacaaca
ttttttaatttttaaggttttcagAAAGTTTGAGTAATTTAATTCTTCTT
AAAGTTCACTTATAATGTTCTGGTATTTCGTTTCTCAAATTAGTGCTTTA
TAAAATCTCTACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013771XLOC_013771Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024521-exon-sc0000501-1491911889:51047..51811TCONS_00024521-exon-sc0000501-1491911889:51047..51811Clytia hemisphaericaexon
TCONS_00024521-exon-sc0000501-1510915933:51047..51811TCONS_00024521-exon-sc0000501-1510915933:51047..51811Clytia hemisphaericaexon
TCONS_00024521-exon-sc0000501-1575043694:51047..51811TCONS_00024521-exon-sc0000501-1575043694:51047..51811Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000501supercontigsc0000501:51047..51811 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.516299	0.0679978	0.164073	0.230404	0.215082	0.266414	0.452529	0.297475	0.127312	0	0.0724656	0.2333	0.0479011	0.147291	0	0	0.431858	0.27083	0.219486	0.13303	2.46632	2.62913	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024521 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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