TCONS_00024514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024514
Unique NameTCONS_00024514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length504

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024514 ID=TCONS_00024514|Name=TCONS_00024514|organism=Clytia hemisphaerica|type=transcript|length=504bp
NAAAAGAATATCAACTCAAAGAATCACTTCTTCGATTCGACAAATTTCTC
AAGGAGAATGATTCAAAACGTGCTCGTGCATTGAAGAAGGCAGCCGATGA
GAGAGATGCCAGTTCTTTCAAAgataaagaaattgaaaaGTTGATTGAAG
AAACCGATATTTTGGTTCAAAAGAAGAACAAAATGCAGAAaaagttggaa
agatattccaaatttcaaaaatatttggacAAAGTGTTAGAAGTTGCCGA
GGAGTTTCACGAGATCAGAGAGATAACTGCTCGTTATGACACATTGATTG
CCACGCACAATGATTTGTTGGGCAATGAGAATCGCAATCAAGACGCCATC
GAACAAGAGAAAGCTCGTTTGAATCGTTTTATTGAGgaCAAAAACAATGA
AGTGTTGAACTACAATAACCAGCTTGCCCAGTTACAAACTGAGTTGGAGA
AAACACAAAGCAAAGCAGTCAAATGGGAATCGACGTGGACACACATTCAA
AACA
Run BLAST on NCBI

transcript from alignment at sc0000501:30839..36520-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024514 ID=TCONS_00024514|Name=TCONS_00024514|organism=Clytia hemisphaerica|type=transcript|length=5682bp|location=Sequence derived from alignment at sc0000501:30839..36520- (Clytia hemisphaerica)
NAAAAGAATATCAACTCAAAGAATCACTTCTTCGATTCGACAAATTTCTC
AAGGTTCGATCCTGTTTTAAGGGGCTTTCGTCTGATGACAGTCCATATGC
CTGCATATGCTACCATCTGGGTAGCCGTTAAGTCCATACCTTTCATTGTC
GAAATCAATCAAATCAAAGTGCTTTAGAAAACTGAGGAAAAGCTAATAAT
ATATAATTGTTCAATCGAGGTTTTTCTGAAAAGTGGTACTTCAAGGGATC
AAACTCTCGGAGAAAAACTTTCGCGAATGAAGCAATTCATGAAATTTTAG
TTTCGAGAACTAATTTTTGCGAATAGAACCAAATATTCCACTAGAAAACG
TTCATTTTTTTCCCACGAAAGTTTATCCCCTCGTACGCAAAGAAGTTACT
TCTGTGTTTAGTGGTCAGCGTGAAGGATATATAGCTTTTTAGGAGGCCCG
GAATCTTTGAGTTAGAAAACTTCGAGCTATCAATTTTCGAGTTAGCTAGA
TTATAACGTCATAAAACTGCAAATTATGACGTCACTCGACTCTAACTCGA
TTTTTCATTTTCAAAAATGGTTTTCTTTATATTTGCAGGAGAATGATTCA
AAACGTGCTCGTGCATTGAAGAAGGCAGCCGATGAGAGAGATGCCAGTTC
TTTCAAAGATAAAGAAATTGAAAAGTAAGTAATAATATTTGGAAATCGCG
TTTGGCATCATTTCTTGCGAAATAGTTTTTACTCAATTTATTAATCTTGT
TTTTTTTCAAATCGAGTTTTTAAAGGGTGTCAGCTGCTTTTTGCAGCTCT
CGTGACCATATGGCTTTTAGGGTCAGGATTTGGTTGCCAGAGGACAAGAT
CGCTAGCCAGCTCTTCTCAAACGATGTTCTTTAGAGACGTCTGTCCCTCT
GAGGAAGATCTCCATAGAGTAATCCTTTTGTTAGATGTTCCCTCCACGGG
ATAATCAGAGCTAATCGAAGGATTCTCATATACGCACTTTTCAGTATTTA
TTCAATGGCCTTAGTCAGGTTCCATGAAGTAGAAGCTTTATGATATAGAA
GGACATACTCGATCGTTGCACTAACCCTTTAACTGCCGTTCGTATTTTTT
AAGGTTCGACCTATTTGCCACGGGAAAAAAGAAGGTTCGACCTATTTGCC
AGATGTCGGCATATGCCGACATGGGCAAAAGGTAGCGATTTTGACTTCGT
TTTCTGAATAATATATGAAGTATCAGCCAAGGACTATTATTTTGAGTTGA
ACATTGTTGAATAGTTATTTTTCAACATAGAAAAGCTTTTAACTGTTATC
ATTTTTCATTTCAAACCATTTAATACAAAATCTTTGTAGAAGTGTTAAAT
TTTGTGGCAAAGAAATGGAAAGTGCCCATGTCGGCAAATCCCGACATCGG
CAAAGAAATCGAAAATGCTCATGTCGGCATATGCCGACATCGGCAGTTAA
AGGGTTCTAAAAAGATTTTTTTTTAATTCTGGTGATATGCTTGATTTCCA
TATTCTGTCCTAATTTGTTAAGTGGCGACGGAGGCTTTCGCTTGTCCAAT
TTCCATAACTCGTTTCGTAGAGGCAATTTCATTGCCATGGTAGGTGAATT
CTTCAAAAGCTCCGATGTCTTGTTTTGTCCGTCATTTAATTAAACCTGTA
CATATGCGCATGGCTAATGGACACGAATTTTCACTTTTGTATTGAATCAT
TTATAGTAAAACAAACTTCACTGTTTCATGCATATTGCTGAGATCAAAAG
AGATATTTTGTGGGAACCGTTTGCCTTTTGAGCCAGAAGGACTACCCTAT
TGGAACTAATTTTCGCGGGAACTAATATTCGCGGTCGAAAAAAAAAAATC
GGAAAAATTATATTTCGCGGGTTTTAATTTTTGCGCTATTGCCCTTTTTT
GGACAAATCTCTTTCATTTTCCTAGGGATTTTTCAAAAATTGAAAAAATT
GTATTTCGCGGGTTCAAATTTTCGTGGTTTTTTAGCAAAACGCTGAAATT
AATTCCCGCAAAATTAGTTCCAATAAGGTAGAGTCGTTATTTTCAGAATG
TCATTCACTTCTTGATTATTGTTTTCTTTCAGGTTGATTGAAGAAACCGA
TATTTTGGTTCAAAAGAAGAACAAAATGCAGAAAAAGTTGGAAAGATATT
CCAAATTTCAAAAATATTTGGACAAAGTGTTAGAAGTTGCCGAGGAGGTT
AGTTTACAAGATGAATGANATATTTGGACAAAGTGTTAGAAGTGGCCGAG
GAGGTTAGTTTACAAGATAAATGTCGTAGTCTTTTATAAAAAAAACTCCG
AAGGCAAGGAAATCTTCTTGTTAATATTAAGCATGAGATTTGAGATTTTT
TTGTTAATAGTAGTAGTAGTGAAATACAAACCGCTACCACGAGACAAATG
AAATTACGTTTTTAATTGTCCTGTAGAAATTTAGATATAGGCAAAAATAA
TTCCACCATGGGCTGGCCTTTTTTGGATGAAATTCTACAGGTCTGAAAAC
CATTTCAAGAAATAATCAAAACAATTTACATCGGTCGTAATCAGTTTTTG
TTATGCGATATTAGTTAGTCTTGATTGTCTTCAGTTTGTGTAAAAATTTC
ACGAGTTCTTTTTAATGTTATCAGATGTTATTGAAAGTTAATTTTATCTA
AAAAAATGACATTAACAACTTTAACGCCCCCAGCGGTTTACGTGAATGCG
TGAATGGGTTTCTTGATTGCGCGAACTCGTGAAAATGGAAAAACCTGGAA
AAGCAAGTGCGCGATTGCGTGAATTAAAAAAACTTATGTAAACGATGTGT
TTAAAAATTGAATAGATCTTTCCATCTTTATTTTGTAGTTTCACGAGATC
AGAGAGATAACTGCTCGTTATGACACATTGATTGCCACGCACAATGTAAG
TTCTCTTTTCCTTGCCAATCCTCTTACAATAGTTTGGTATCCAGATTTGT
TTTACAAGCATGGCAAATCAACCTTTTGCCAAGAGAGCTACTTTGAAAAC
TTCACTGAACTTCAATGTTATTTTTTTTTTTGAATTTTTTTCAAATTGAC
TCAAAGGTCTCATTTAAAAACATTGACTTTATTGAAAACAAGATAATAGG
CTGTAGAATATAAAGTGTAGAGCGTTTGTCTACAGTGGTGTCCAAGACCG
AAGGTTCGACTCCCAGCTGGGTCCTACCAAAGATCTCAAATAGTTCTTAG
TTGTCTCCCTACTTGAATTAAAACAAAAATTTAAAAATTCATGAAACAAT
TTTTTTCAAACCTTTTTGGTGTTTATACCATCACCAGGTTCATAAAAATG
ATCTCGTTTGTATAACTCAGCTAGTTGAAGATCCACAAGTTAAAACACAC
CCACATGTCACAGACCCGGTGGGACCGAAAATTTTGCGAAAATTTTTTCC
CCGGTGAGAAAAAATACTATTTCAGCCCCATTGGATTTTTGACCTGAGAA
TAATCGTATTTTTGATCCTCGTCGGGATTTCGAATGAAATTTTTATCCTC
ACTGTGGAAAGAAGATCCACCGGGGCAGTGGAACAGGAGTGTTGATAACA
AATTGAATTNTATCCTCACTGTGGAAAGAAGTTCCACCGGGGCAGTGGAA
CAGGAGTGTTGATAACAAATTGAATTATTGTTGAATGTTATTTCAACGAT
TTTTACAGGATTTGTTGGGCAATGAGAATCGCAATCAAGACGCCATCGAA
CAAGAGAAAGCTCGTTTGAATCGTTTTATTGAGGTAGACACATGATAATT
TCATGCGTAATAAGATAATTTCATGCGTAGTAAGACAATTTCTAAAATTT
TTGCCTTTCCTAAAAAACTTTACACCCGATAGAATAAAAAACAACAAACC
TCCAAAGGACTTCAAATTTCCATCGAGAACGGGAGCTTATCGAACATATT
GATCAAATAAAAAAACAGAACTTTGAATTAGAACGCGTCATTCGTCACTG
GCGACCGTTTCATTTTCATTTTTTTAGGACAAAAACAATGAAGTGTTGAA
CTACAATAACCAGGTAATTCATTCGTCTTAATTAATCTCTTTTGAAGTAA
GTAATAACAAACTTTAGGCTTCAGGTACCGTTTTTTTAAGCGTACAAATC
TTCAAGAAAAGAAACTTCTGCTAGGTTAAGAAATTGTGACATCCGTGACA
TTTACGAATGTTGCGAATTAGAGGCGAAAATATCTTTCGTATTTAAGATC
TGATCCGCCGCTAGAAGACAGGGAGGGCTAGAATGTACAGTGGAATTAAG
AGTGAGATAGTAGAACAAAGTAGACATTAGTTTTTTACTTCATTACTGTG
TTTCACATAAAAATTTTCATTAATATAAGTAACATTCAGCTTACGATAAA
TTTAAATACTTCTTCAAATAAAGTCTGCGTCTAGACGGTGTCGTTGTCTC
GAGATAGCGATTGGAATTTGCTTGATCTTCTTCCGACATACAGTTGGACA
TCCTCGGTTGACATCTGTGACGATCCCTGGTTAGCACATCCACAAAACCA
TGGAAAATTTTGGTCGTGCACAGGAGTAGGCTCTGGTAAATCTGGTCACT
ACCTATGACACGGTTCACNTGGTCGTGCACAGGAGTAGGCTCTGGTAAAT
CTGGTCACTAGCTATGACACGGTTCATAGAAGCCTAACTCCGCGCAATTA
TTGATTCTCCAAGAGACTCTTCCCAGGTCTTGCTCGCGGCCGAGCGCTAT
TTGAGAATCAATTTCATTTTCTATCTAGTTGAGATGTTCTAATCTAATGC
ATAATGCATTTTCTTCACCATCTAATTACAAAATTTCTATATAGAAATCC
CTCATGAGAATATATTGCATATTTACTATTTCTAAGTAACCATCTACTAC
GCATATTTTTCTTCCAGCTTGCCCAGTTACAAACTGAGTTGGAGAAAACA
CAAAGCAAAGCAGTCAAATGGTGAGAGCTCATCTTAAAATACCACACCCT
TATTTTAACCGAAATTGAAAATGAGCCGTATCACTATTAGTTGAAAACGC
CATAAATAGCAAGTATACACTTTTTGAAAATTTGATTTCGCGTGATATAC
TTCGCGAAAATGATAAAACTTAGCGAAAACGCAAATTTCAACATCTCGAA
AATTTACCCGATTAAAGTCCGTGGCACAATCTCACGGAGAACTACTGGCA
CTTCAAATGGCTATAAAATGTTTCTTTCTTTTTTTTCACTGAGCTTTGAG
TTCTACGTATACGTGAAATTGTGCAGTTGGTTAGTCTACATAATAAACAG
CTCCAGGATTTTAGGCCTTACATTTGAACCATGGCACTAGATCATTGACT
ATGCGAGTGAATTCCTCCACCATTTTTTTAAATGTACAGTTTTGTTTTTA
AGGGAATCGACGTGGACACACATTCAAAACAGTTTTGTTTTTAAGGGAAT
CGACGTGGACACACATTCAAAACAGTTTTGTTTTTAAGGGAATCGACGTG
GACACACATTCAAAACAGTTTTGTTTTTAAGGGAATCGACGTGGACACAC
ATTCAAAACAGTTTTGTTTTTAAGGGAATCGACGTGGACACACATTCAAA
ACAGTTTTGTTTTTAAGGGAATCGACGTGGACACACATTCAAAACAGTTT
TGTTTTTAAGGGAATCGACGTGGACACACATTCAAAACAGTTTTGTTTTT
AAGGGAATCGACGTGGACACACATTCAAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013766XLOC_013766Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024514-exon-sc0000501-1575043694:36468..36520TCONS_00024514-exon-sc0000501-1575043694:36468..36520Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1575043694:35847..35932TCONS_00024514-exon-sc0000501-1575043694:35847..35932Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1575043694:34324..34438TCONS_00024514-exon-sc0000501-1575043694:34324..34438Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1575043694:33626..33682TCONS_00024514-exon-sc0000501-1575043694:33626..33682Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1575043694:32788..32862TCONS_00024514-exon-sc0000501-1575043694:32788..32862Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1575043694:32508..32543TCONS_00024514-exon-sc0000501-1575043694:32508..32543Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1575043694:31601..31653TCONS_00024514-exon-sc0000501-1575043694:31601..31653Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1575043694:30839..30867TCONS_00024514-exon-sc0000501-1575043694:30839..30867Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1510915933:36468..36520TCONS_00024514-exon-sc0000501-1510915933:36468..36520Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1510915933:35847..35932TCONS_00024514-exon-sc0000501-1510915933:35847..35932Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1510915933:34324..34438TCONS_00024514-exon-sc0000501-1510915933:34324..34438Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1510915933:33626..33682TCONS_00024514-exon-sc0000501-1510915933:33626..33682Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1510915933:32788..32862TCONS_00024514-exon-sc0000501-1510915933:32788..32862Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1510915933:32508..32543TCONS_00024514-exon-sc0000501-1510915933:32508..32543Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1510915933:31601..31653TCONS_00024514-exon-sc0000501-1510915933:31601..31653Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1510915933:30839..30867TCONS_00024514-exon-sc0000501-1510915933:30839..30867Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1491911889:36468..36520TCONS_00024514-exon-sc0000501-1491911889:36468..36520Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1491911889:35847..35932TCONS_00024514-exon-sc0000501-1491911889:35847..35932Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1491911889:34324..34438TCONS_00024514-exon-sc0000501-1491911889:34324..34438Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1491911889:33626..33682TCONS_00024514-exon-sc0000501-1491911889:33626..33682Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1491911889:32788..32862TCONS_00024514-exon-sc0000501-1491911889:32788..32862Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1491911889:32508..32543TCONS_00024514-exon-sc0000501-1491911889:32508..32543Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1491911889:31601..31653TCONS_00024514-exon-sc0000501-1491911889:31601..31653Clytia hemisphaericaexon
TCONS_00024514-exon-sc0000501-1491911889:30839..30867TCONS_00024514-exon-sc0000501-1491911889:30839..30867Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000501supercontigsc0000501:30839..36520 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2.07869e-06	0
Blast
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BLAST of TCONS_00024514 vs. Swiss-Prot (Human)
Match: CCD42 (Coiled-coil domain-containing protein 42 OS=Homo sapiens GN=CCDC42 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.727e-35
Identity = 71/167 (42.51%), Postives = 109/167 (65.27%), Query Frame = 3 
Query:    3 KEYQLKESLLRFDKFLKENDSKRARALKKAADERDASSFKDKEIEKLIEETDILVQKKNKMQKKLERYSKFQKYLDKVLEVAEEFHEIREITARYDTLIATHNDLLGNENRNQDAIEQEKARLNRFIEDKNNEVLNYNNQLAQLQTELEKTQSKAVKWESTWTHIQN 503
            KE QLK  + + ++F++END KR RA+KKA  ER+      +E+ K  +E   L  +  ++  KL+ Y  F KYL+KV+E +E F EI E+ ARY TL++  +DL+ +    Q+ IE+ KARL R++E+K++E+L  NN+LA+LQ   ++ +S  + WES W HIQN
Sbjct:   82 KEAQLKAHIQKSEQFIQENDQKRIRAMKKANKERELKCQHMQELTKRKQEMVALRLEHQRLSAKLKDYYIFNKYLEKVVENSE-FEEIHEVIARYKTLVSMRHDLMQSAQEGQEKIERAKARLARYMEEKDDEILQQNNELARLQMRFDRARSNVIFWESRWAHIQN 247
The following BLAST results are available for this feature:
BLAST of TCONS_00024514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CCD421.727e-3542.51Coiled-coil domain-containing protein 42 OS=Homo s... [more]
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