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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024505 ID=TCONS_00024505|Name=TCONS_00024505|organism=Clytia hemisphaerica|type=transcript|length=2286bp
ccaatcccaagaggagtacttggtaacgtgatcaaaaactgagcaaatcg
atttttatcttttgatattaacaaaggaaaaagataacaaaaagttaaaa
caataagcttccagaccagggttttatacggactatgatttGATGCAGCT
GCTGTCATGTGTGACAGGTATTACTTGACGTTGAATAAGTTTCTAATAAG
TGTTCATTCGAGAGAAATATTCTTGAAAACAATCCATTACTGAAACCTTG
TTGCTATTTGCTGTGTTGTCAACATTCGAGACATGAGTTATccagaaatt
tcaaaagattggTTACATCGACGTGGCTTTaccaccaaaattttttttct
acaaaattttGTGTTTGGGATGGAATATTCATTGACCTTTGTCACTTTGT
ACATTTATTTAAAAGACGTCTTAAAATCACAACACGTCGATTTTTTCTAT
AGTCTCATATCCGGCAGTTATTTGGGATTCATAGCGATAGCTGGGCTAAT
TATGAGTAAATTGTTCGACAATACACGACGAACCCGTCTCTTGTTTATCA
TTGGAAATATTTTGACGTGTTTTGGAAACATCCTTTATACAATCCCTTAT
TCGCCTTGGTTGCTGTTCGCTGGCCGCACCATATCAGGTTTAAGTGGATA
CATATCCCCTATCTTGACATCAGAGATTGCTCGTTCCTATCCACGAGATG
AAGTTTTAGGGAAACTATCAACATTATGCTTTTCCTTCTCGCTGGGTTTG
ATAGGCGGTCCGTGTATCAATTTCGCCTTTATACGAGCTGATTTTCGGTT
ATTTGGTGTTCATATTGGATATGCTAACGGTTCTGGTTTGGCTCTCACGA
TCATTTACTTTTCAATGATGATCTTATCGTTTTTTGTGAGTGATCTCTCA
AGAGAGTTTGATTTGAAAGAAGCAACAAGGAATTACCATCAACATAACAA
ATCTTTGGAAATAGAGAAAGCAACAGAGGTAGATTCATTTGAGAAAACTG
ATGAAGCATTGAAAGAAAGTGATGTTCAGACATCAATACTGCCGACAAAG
CTAGAGCCAGACCAAGAAGAACCTTTACTAAACACTATTGAGACAATCAA
ACAACTGTTAACTAATATAGATGCTATGATTTTATTGATGATTgcgtttt
tcttttcttactCAATTGTTACATTTGAATCTTGGATCCCCATGACATGT
GTTAATTTCCTGCACTGGAATTTGGCTGAAATCAACGCAATTGTTTTGGC
GACTGGTGCTGTTTGCAGCATAAGTCTTTCAGGTTTCGCTGTTATTAACG
TAAGTCACTTTGCTTTTCACCTATTGGCTGTCTGCAGTTGCATATCATTG
GCGTTTGTTTACgtaatgtttttatatttcCATTGGTACGGTGGTTTGAT
TTTCGCCGTCGATATAACGATTTGGATATGCTATACTTTCTGCTTTTCAC
TCCTCGCAATTGGCTTTGAAATGTTCACGTCGATAACATTAGCTTTGATG
GTACCTTCAAGAGTACAAACTTCCGCTGAAAGTATCCGACTAGCTTTTTC
AAGTGGCGGTGCTTCAATTGGTATGTTTACGGCTGCGTTCCTGTTTCACG
TATTATCGTATTTCAACCCTATATGCATTGTTCTGTGCTTTGTTCTGTCT
TCTATGTTAGTGTGGAGacggaaatttttccaaaatccgAAAGAAATTTT
ACATTAGACGATTTTTGATTAGTAGTAGAATTCACTAATTTTgatctcat
tattttttttattttttgaaattccactTTATAGGAATTTTGGGTTCTTA
GTAGGGGTTCTtatcacagatctgtaaagcccgaaaggctagatccGCGG
CCTTTATTTTGATAGGATTTcttaccaaagaaatcacgtgacaacaagca
atttcactggtttgagagtaAGGACCAACCTTAACCATAGTTTTTGTTTC
GACGCTGCGAAGACAGATTTTAGGGCGttgaaaaacattgttctaCCTTT
AAATTTTCTTCGTTTGTAATTATATTTGGAATTAGGTTTATTATCATACA
ACTGAGGACCATTTATTTCTCCCTTGCATAgaattttaatatttaaaatt
aGTTATAACTCactacaatcagcgccgaaatatttggcacaaaaggggaa
ttccgtCAAAACTTTgtaaccacaagtgatttttaagtgctttgaagtac
agttcggaagtagagttttaactctgaatttaacattagacttaagactt
aaggccggtttccacttgcgcgtgctgtgatcgcac Run BLAST on NCBI protein sequence of TCONS_00024505-protein >TCONS_00024505-protein ID=TCONS_00024505-protein|Name=TCONS_00024505-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp
MSYPEISKDWLHRRGFTTKIFFLQNFVFGMEYSLTFVTLYIYLKDVLKSQ
HVDFFYSLISGSYLGFIAIAGLIMSKLFDNTRRTRLLFIIGNILTCFGNI
LYTIPYSPWLLFAGRTISGLSGYISPILTSEIARSYPRDEVLGKLSTLCF
SFSLGLIGGPCINFAFIRADFRLFGVHIGYANGSGLALTIIYFSMMILSF
FVSDLSREFDLKEATRNYHQHNKSLEIEKATEVDSFEKTDEALKESDVQT
SILPTKLEPDQEEPLLNTIETIKQLLTNIDAMILLMIAFFFSYSIVTFES
WIPMTCVNFLHWNLAEINAIVLATGAVCSISLSGFAVINVSHFAFHLLAV
CSCISLAFVYVMFLYFHWYGGLIFAVDITIWICYTFCFSLLAIGFEMFTS
ITLALMVPSRVQTSAESIRLAFSSGGASIGMFTAAFLFHVLSYFNPICIV
LCFVLSSMLVWRRKFFQNPKEILH Run BLAST on NCBI transcript from alignment at sc0000501:111145..115207+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024505 ID=TCONS_00024505|Name=TCONS_00024505|organism=Clytia hemisphaerica|type=transcript|length=4063bp|location=Sequence derived from alignment at sc0000501:111145..115207+ (Clytia hemisphaerica)
ccaatcccaagaggagtacttggtaacgtgatcaaaaactgagcaaatcg
atttttatcttttgatattaacaaaggaaaaagataacaaaaagttaaaa
caataagcttccagaccagggttttatacggactatgatttGATGCAGCT
GCTGTCATGTGTGACAGGTATTACTTGACGTTGAATAAGTTTCTAATAAG
TGTTCATTCGAGAGAAATATTCTTGAAAACAATCCATTACTGAAACCTTG
TTGCTATTTGCTGTGTTGTCAACATTCGAGACATGAGTTATccagaaatt
tcaaaagattggTTACATCGACGTGGCTTTaccaccaaaattttttttct
acaaaattttGTGTTTGGGATGGAATATTCATTGACCTTTGTCACTTTGT
ACATTTATTTAAAAGACGTCTTAAAATCACAACACGTCGATTTTTTCTAT
AGTCTCATATCCGGCAGTTATTTGGGATTCATAGCGATAGCTGGGCTAAT
TATGAGTAAATTGTTCGACAATACACGACGAACCCGTCTCTTGTTTATCA
TTGGAAATATTTTGACGTGTTTTGGAAACATCCTTTATACAATCCCTTAT
TCGCCTTGGTTGCTGTTCGCTGGCCGCACCATATCAGGTAGAAATATtta
taatcaaaaaaattataatttgggaccgccaaagacgggggtaaatcGTG
TGGAATCAATAAAAAATGTGATCTCAGGATCAAGGCCTCCTAAAACCACG
GGATAAGTTCTAAAAGTAATGTTATCATAAAATGAATGCCCAGTAAAGGT
TTGGTGGCCATATAACttcaattttcatgaaattatgagcaattttctaa
aattcaaaatgacaGACGACCTAGCAacaaaaaatggcttttagcAAGGT
GAGCGCTTCGTCCAACCCCTAtgttgttatacatttttgaaaccttttat
CCAAAAGAAAAGTACGTTATTCAATTCTTTCTTGGAAAAAGTCCTTTTTA
AGGATCTTAGGCTTACTCCCCGGCATTAAGACAAAGATATCatgaaattt
caacctttttttcaCAAGATatataagaaaaagaaatatgttATATTCAT
TCGCGCTCTGTTGGCTTTTTAAGCtcaaaagtttgaagatttttgagaaa
tcgcAAAGTTTGTCTACAAAACATCCACGATGGTGtgtagaaatagaaag
ttctctCCATCCGTGGTGCTCCATTTTACAATCTCaccattctggtctgt
aaaatgcataattttgaaaaaaaaaaaaaaaaactttatctcAGGAACCT
TCCTACCAAGTTTTAATGCTGTAGCAttaatagaaataaaaattattaat
aaaagcatttttaacataacccccggatttttcgttttaaccatgatttt
ttcaaaaaccttcAAGAANTTCCTACCAAGTTTTAATGCTGTAGCAttaa
tagaaataaaaattattaataaaagcatttttaacataacccccggattt
ttcgttttaaccatgattttttcaaaaaccttcAAGAATCGTCCgatttt
cgatgaaaatttgtttCGGCCGAAAATCGccttttttgcagattttcatt
gaattttttcgtttaatatttttgtttaagaATGCCCACagttaagcatg
gttcaattttcaaggaAACTGACTTTGATAGCCGGACCTTTCTAAATATC
GTCAGAACAGCAGAgaatcgccggaaaaacggttttcCATTCCGGAAAAA
TTGGTTTATTAAGTGATTATAATTTGGATTTTGTAGATTTCGAATATTTA
TCATTTGTTaccctcattttctttttccttaCACCTTATATATCCcccaa
tcaacaatcaatgttgaaatttaatgcgttatgctTTTTCGCTAacacta
tattttctgactgattgttgTCACATTTCTATacagctttcatcatcagg
taggtccattcagcatacaTTCAACTTGTCAAATCAGGTTTTCACGCCGA
TTCCGAATCTGAATTTTATTTTGTCATAGCTATTACGCTTGACCTTATAT
AGAAGGCTTTATTTATTCAgaaaatatcgcaaaaatggtacgaaatcaat
atttttgaaaggaGATTCCGGATTTCAAATTCGGAATTagcatgaaaaat
taatttaaaaaagatagttaAACATAGATATTTCCAAATAAAGTCATttt
tggaccccccccccccggaatgaccaaaaaaaaaaaacttccggttctgc
ccccccccccccaaaaagaCCAAAATAAAACAACTTTCCGGACTGACCGA
TCCACCTCAAAAATCTAGGGTCGATTGACGGCAAACCAAGAATTATCTTT
TTAAGTCCAGtcttattctcataaaaaaagtagTCTGACGCCTTTTAATT
ATTATCTTTTACAGGTTTAAGTGGATACATATCCCCTATCTTGACATCAG
AGATTGCTCGTTCCTATCCACGAGATGAAGTTTTAGGGAAACTATCAACA
TTATGCTTTTCCTTCTCGCTGGGTTTGATAGGCGGTCCGTGTATCAATTT
CGCCTTTATACGAGCTGATTTTCGGTTATTTGGTGTTCATATTGGATATG
CTAACGGTTCTGGTTTGGCTCTCACGATCATTTACTTTTCAATGATGATC
TTATCGTTTTTTGTGAGTGATCTCTCAAGAGAGTTTGATTTGAAAGAAGC
AACAAGGAATTACCATCAACATAACAAATCTTTGGAAATAGAGAAAGCAA
CAGAGGTAGATTCATTTGAGAAAACTGATGAAGCATTGAAAGAAAGTGAT
GTTCAGACATCAATACTGCCGACAAAGCTAGAGCCAGACCAAGAAGAACC
TTTACTAAACACTATTGAGACAATCAAACAACTGTTAACTAATATAGATG
CTATGATTTTATTGATGATTgcgtttttcttttcttactCAATTGTTACA
TTTGAATCTTGGATCCCCATGACATGTGTTAATTTCCTGCACTGGAATTT
GGCTGAAATCAACGCAATTGTTTTGGCGACTGGTGCTGTTTGCAGCATAA
GTCTTTCAGGTTTCGCTGTTATTAACGTAAGTCACTTTGCTTTTCACCTA
TTGGCTGTCTGCAGTTGCATATCATTGGCGTTTGTTTACgtaatgttttt
atatttcCATTGGTACGGTGGTTTGATTTTCGCCGTCGATATAACGATTT
GGATATGCTATACTTTCTGCTTTTCACTCCTCGCAATTGGCTTTGAAATG
TTCACGTCGATAACATTAGCTTTGATGGTACCTTCAAGAGTACAAACTTC
CGCTGAAAGTATCCGACTAGCTTTTTCAAGTGGCGGTGCTTCAATTGGTA
TGTTTACGGCTGCGTTCCTGTTTCACGTATTATCGTATTTCAACCCTATA
TGCATTGTTCTGTGCTTTGTTCTGTCTTCTATGTTAGTGTGGAGacggaa
atttttccaaaatccgAAAGAAATTTTACATTAGACGATTTTTGATTAGT
AGTAGAATTCACTAATTTTgatctcattattttttttattttttgaaatt
ccactTTATAGGAATTTTGGGTTCTTAGTAGGGGTTCTtatcacagatct
gtaaagcccgaaaggctagatccGCGGCCTTTATTTTGATAGGATTTctt
accaaagaaatcacgtgacaacaagcaatttcactggtttgagagtaAGG
ACCAACCTTAACCATAGTTTTTGTTTCGACGCTGCGAAGACAGATTTTAG
GGCGttgaaaaacattgttctaCCTTTAAATTTTCTTCGTTTGTAATTAT
ATTTGGAATTAGGTTTATTATCATACAACTGAGGACCATTTATTTCTCCC
TTGCATAgaattttaatatttaaaattaGTTATAACTCactacaatcagc
gccgaaatatttggcacaaaaggggaattccgtCAAAACTTTgtaaccac
aagtgatttttaagtgctttgaagtacagttcggaagtagagttttaact
ctgaatttaacattagacttaagacttaaggccggtttccacttgcgcgt
gctgtgatcgcac Coding sequence (CDS) from alignment at sc0000501:111145..115207+ >TCONS_00024505 ID=TCONS_00024505|Name=TCONS_00024505|organism=Clytia hemisphaerica|type=CDS|length=2850bp|location=Sequence derived from alignment at sc0000501:111145..115207+ (Clytia hemisphaerica)
ATGAGTTATccagaaatttcaaaagattggTTACATCGACGTGGCTTTac
caccaaaattttttttctacaaaattttGTGTTTGGGATGGAATATTCAT
TGACCTTTGTCACTTTGTACATTTATTTAAAAGACGTCTTAAAATCACAA
CACGTCGATTTTTTCTATAGTCTCATATCCGGCAGTTATTTGGGATTCAT
AGCGATAGCTGGGCTAATTATGAGTAAATTGTTCGACAATACACGACGAA
CCCGTCTCTTGTTTATCATTGGAAATATTTTGACGTGTTTTGGAAACATC
CTTTATACAATCCCTTATTCGCCTTGGTTGCTGTTCGCTGGCCGCACCAT
ATCAGGTTTAAGTGGATACATATCCCCTATCTTGACATCAGAGATTGCTC
GTTCCTATCCACGAGATGAAGTTTTAGGGAAACTATCAACATTATGCTTT
TCCTTCTCGCTGGGTTTGATAGGCGGTCCGTGTATCAATTTCGCCTTTAT
ACGAGCTGATTTTCGGTTATTTGGTGTTCATATTGGATATGCTAACGGTT
CTGGTTTGGCTCTCACGATCATTTACTTTTCAATGATGATCTTATCGTTT
TTTGTGAGTGATCTCTCAAGAGAGTTTGATTTGAAAGAAGCAACAAGGAA
TTACCATCAACATAACAAATCTTTGGAAATAGAGAAAGCAACAGAGGTAG
ATTCATTTGAGAAAACTGATGAAGCATTGAAAGAAAGTGATGTTCAGACA
TCAATACTGCCGACAAAGCTAGAGCCAGACCAAGAAGAACCTTTACTAAA
CACTATTGAGACAATCAAACAACTGTTAACTAATATAGATGCTATGATTT
TATTGATGATTgcgtttttcttttcttactCAATTGTTACATTTGAATCT
TGGATCCCCATGACATGTGTTAATTTCCTGCACTGGAATTTGGCTGAAAT
CAACGCAATTGTTTTGGCGACTGGTGCTGTTTGCAGCATAAGTCTTTCAG
GTTTCGCTGTTATTAACGTAAGTCACTTTGCTTTTCACCTATTGGCTGTC
TGCAGTTGCATATCATTGGCGTTTGTTTACgtaatgtttttatatttcCA
TTGGTACGGTGGTTTGATTTTCGCCGTCGATATAACGATTTGGATATGCT
ATACTTTCTGCTTTTCACTCCTCGCAATTGGCTTTGAAATGTTCACGTCG
ATAACATTAGCTTTGATGGTACCTTCAAGAGTACAAACTTCCGCTGAAAG
TATCCGACTAGCTTTTTCAAGTGGCGGTGCTTCAATTGGTATGTTTACGG
CTGCGTTCCTGTTTCACGTATTATCGTATTTCAACCCTATATGCATTGTT
CTGTGCTTTGTTCTGTCTTCTATGTTAGTGTGGAGacggaaatttttcca
aaatccgAAAGAAATTTTACATTAGATGAGTTATccagaaatttcaaaag
attggTTACATCGACGTGGCTTTaccaccaaaattttttttctacaaaat
tttGTGTTTGGGATGGAATATTCATTGACCTTTGTCACTTTGTACATTTA
TTTAAAAGACGTCTTAAAATCACAACACGTCGATTTTTTCTATAGTCTCA
TATCCGGCAGTTATTTGGGATTCATAGCGATAGCTGGGCTAATTATGAGT
AAATTGTTCGACAATACACGACGAACCCGTCTCTTGTTTATCATTGGAAA
TATTTTGACGTGTTTTGGAAACATCCTTTATACAATCCCTTATTCGCCTT
GGTTGCTGTTCGCTGGCCGCACCATATCAGGTTTAAGTGGATACATATCC
CCTATCTTGACATCAGAGATTGCTCGTTCCTATCCACGAGATGAAGTTTT
AGGGAAACTATCAACATTATGCTTTTCCTTCTCGCTGGGTTTGATAGGCG
GTCCGTGTATCAATTTCGCCTTTATACGAGCTGATTTTCGGTTATTTGGT
GTTCATATTGGATATGCTAACGGTTCTGGTTTGGCTCTCACGATCATTTA
CTTTTCAATGATGATCTTATCGTTTTTTGTGAGTGATCTCTCAAGAGAGT
TTGATTTGAAAGAAGCAACAAGGAATTACCATCAACATAACAAATCTTTG
GAAATAGAGAAAGCAACAGAGGTAGATTCATTTGAGAAAACTGATGAAGC
ATTGAAAGAAAGTGATGTTCAGACATCAATACTGCCGACAAAGCTAGAGC
CAGACCAAGAAGAACCTTTACTAAACACTATTGAGACAATCAAACAACTG
TTAACTAATATAGATGCTATGATTTTATTGATGATTgcgtttttcttttc
ttactCAATTGTTACATTTGAATCTTGGATCCCCATGACATGTGTTAATT
TCCTGCACTGGAATTTGGCTGAAATCAACGCAATTGTTTTGGCGACTGGT
GCTGTTTGCAGCATAAGTCTTTCAGGTTTCGCTGTTATTAACGTAAGTCA
CTTTGCTTTTCACCTATTGGCTGTCTGCAGTTGCATATCATTGGCGTTTG
TTTACgtaatgtttttatatttcCATTGGTACGGTGGTTTGATTTTCGCC
GTCGATATAACGATTTGGATATGCTATACTTTCTGCTTTTCACTCCTCGC
AATTGGCTTTGAAATGTTCACGTCGATAACATTAGCTTTGATGGTACCTT
CAAGAGTACAAACTTCCGCTGAAAGTATCCGACTAGCTTTTTCAAGTGGC
GGTGCTTCAATTGGTATGTTTACGGCTGCGTTCCTGTTTCACGTATTATC
GTATTTCAACCCTATATGCATTGTTCTGTGCTTTGTTCTGTCTTCTATGT
TAGTGTGGAGacggaaatttttccaaaatccgAAAGAAATTTTACATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024505-exon-sc0000501-1491911889:111145..111781 | TCONS_00024505-exon-sc0000501-1491911889:111145..111781 | Clytia hemisphaerica | exon |
| TCONS_00024505-exon-sc0000501-1510915933:111145..111781 | TCONS_00024505-exon-sc0000501-1510915933:111145..111781 | Clytia hemisphaerica | exon |
| TCONS_00024505-exon-sc0000501-1575043694:111145..111781 | TCONS_00024505-exon-sc0000501-1575043694:111145..111781 | Clytia hemisphaerica | exon |
| TCONS_00024505-exon-sc0000501-1491911889:113559..115207 | TCONS_00024505-exon-sc0000501-1491911889:113559..115207 | Clytia hemisphaerica | exon |
| TCONS_00024505-exon-sc0000501-1510915933:113559..115207 | TCONS_00024505-exon-sc0000501-1510915933:113559..115207 | Clytia hemisphaerica | exon |
| TCONS_00024505-exon-sc0000501-1575043694:113559..115207 | TCONS_00024505-exon-sc0000501-1575043694:113559..115207 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000501 | supercontig | sc0000501:111145..115207 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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