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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024499 ID=TCONS_00024499|Name=TCONS_00024499|organism=Clytia hemisphaerica|type=transcript|length=1361bp
atagcccaaaatcgactttctcgccggaactttaaatcttgaaaaacgtt
aaaataaccaaaattatcaaaatattatgaccttgattgNgttcttataa
aaaaaacgtctaTAACATTTGGTAGACAAATGACTACAGGTGTAAGaggt
ttatttaatttttaccactttcacaaaaattcaaaaaattacaaagaaaa
aaattacagaaattacttATTGACACTAGTATCGTGATCCAAAAAtccga
aaatctaacaaaaattacaaaaattacacACGACAATAATCAAACTTTAC
AATCTTTTAGTTATGTTtctttgaaagtttcaaaaggTTCAAATGTTTCT
CAAACCAGCTCTCTTTGTCATTTCCGAAGCGTAGAAATCTAACATCTCCG
AAAATGGATCTCTTTTTGCTTCACGACACACATATTTTGGGCTCGAGAAA
CTTCCTTCGTTGACACATCTTCTCATTGAGCCGGTATAGGGATTCCCTTC
ACGGCAACATCTCCCATTGTTTCCCTCACAGCCAGCGTTTCCCAGTGGAA
TACAGCTTCCTCTTCTTGTAAATTGACCACGGTAGTAATCACTTAAGGGA
TCTCTTTTTGCTTCACGACAAACATATTTTGGGTTCGAGAAACTTCCTTC
GTTGACACATCTTCTCATTGAGCCGGTATAGGGATTCCCTTCACGGCAAC
ATCTCCCATTGTTTCCCTCACAGTCAGCGTTTCCTAGTGGAATACAGCTT
CGTCTTCTTGTAAATTGGCCACGGTAGTAATCACTTAAGGGATCTCTTTT
TGCTTCACGACAAACATATTTCGGGTTCGAGAAACTTCCTTCGTTGACAC
ATCTTCTCATTGAGCCAGTATAGGGATTCCCTTCACGACAACATCTTCTC
ATTGAGCCGGTATAGGGATTCCCTTCACGGCAACATCTTCCATTGTTTCC
CTCACAGTCAGCGTTTCCTAGTGGAATACAGCTTCCTCTTCTTGTAAATT
GGCCACGGTAGTAATCACTTAAGGGATCTCTTTTTGCTTCACGACACACA
TATTTTGGGCTCGAGAAACTTCCTTCGTTGACACATCTTCTCATTGAGCC
AGTATAGGGATTCCCTTCACGACAACATCTCCCATTGTTTCCCTCACAGC
CAGCGTTACCCAGTGGAACACAGCTTCCTTGTACTTTTTCAAAAGCCAAA
AGTGCGAAAAGTATCGTCAGTAACATTGTCTTCATCTTCATATAATTTAA
AACCTATAAAGaataattgacatttttcataaTAATCCTTAAACTGTGTT
ACAAACAGTACATTTGATTAAACAACGGTGATATATTGCTATAACAAGAA
GGTGAGAGACT Run BLAST on NCBI transcript from alignment at sc0000501:70883..72585+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024499 ID=TCONS_00024499|Name=TCONS_00024499|organism=Clytia hemisphaerica|type=transcript|length=1703bp|location=Sequence derived from alignment at sc0000501:70883..72585+ (Clytia hemisphaerica)
atagcccaaaatcgactttctcgccggaactttaaatcttgaaaaacgtt
aaaataaccaaaattatcaaaatattatgaccttgattgNgttcttataa
aaaaaacgtctaTAACATTTGGTAGACAAATGACTACAGGTGTAAGaggt
ttatttaatttttaccactttcacaaaaattcaaaaaattacaaagaaaa
aaattacagaaattacttATTGACACTAGTATCGTGATCCAAAAAtccga
aaatctaacaaaaattacaaaaattacacACGACAATAATCAAACTTTAC
AATCTTTTAGTTATGTTtctttgaaagtttcaaaaggTTCAAATGTTTCT
CAAACCAGCTCTCTTTGTCATTTCCGAAGCGTAGAAATCTAACATCTCCG
AAAATGGATCTCTTTTTGCTTCACGACACACATATTTTGGGCTCGAGAAA
CTTCCTTCGTTGACACATCTTCTCATTGAGCCGGTATAGGGATTCCCTTC
ACGGCAACATCTCCCATTGTTTCCCTCACAGCCAGCGTTTCCCAGTGGAA
TACAGCTTCCTCTTCTTGTAAATTGACCACGGTAGTAATCACTTAAGGGA
TCTCTTTTTGCTTCACGACAAACATATTTTGGGTTCGAGAAACTTCCTTC
GTTGACACATCTTCTCATTGAGCCGGTATAGGGATTCCCTTCACGGCAAC
ATCTCCCATTGTTTCCCTCACAGTCAGCGTTTCCTAGTGGAATACAGCTT
CGTCTTCTTGTAAATTGGCCACGGTAGTAATCACTTAAGGGATCTCTTTT
TGCTTCACGACAAACATATTTCGGGTTCGAGAAACTTCCTTCGTTGACAC
ATCTTCTCATTGAGCCAGTATAGGGATTCCCTTCACGACAACATCTCCCG
TTGTTTCCCTCACAGTCAGCGTTTCCTAGTGGAATACAGCTTCCTCTTCT
TGTAAATTGGCCACGGTAGTAATCACTTAAGGGATCTCTTTTTGCTTCAC
GACACACATATTTTGGGCTCGAGAAACTTCCTTCGTTGACACATCTTCTC
ATTGAGCCGGTATAGGGATTCCCTTCACGGCAACATCTTCCATTGTTTCC
CTCACAGTCAGCGTTTCCTAGTGGAATACAGCTTCCTCTTCTTGTAAATT
GGCCACGGTAGTAATCACTTAAGGGATCTCTTTTTGCTTCACGACACACA
TATTTTGGGCTCGAGAAACTTCCTTCGTTGACACATCTTCTCATTGAGCC
AGTATAGGGATTCCCTTCACGACAACATTTCCCATTGTTTCCCTCACAGC
CAGCGTTTCCCAGTGGAATACAGCTCCCTCTTCTTGCAGATTGGCCAAGG
TAGTAATCACTTAAGGGATCTCTTTTTGCTTCACGACACACATATTTTGG
GCTCGAGAAACTTCCTTCGTTGACACATTTTCTCATTGAGCCAGTATATG
GATTTCCTTCACGACAACATCTCCCATTGTTTCCCTCACAGCCAGCGTTA
CCCAGTGGAACACAGCTTCCTTGTACTTTTTCAAAAGCCAAAAGTGCGAA
AAGTATCGTCAGTAACATTGTCTTCATCTTCATATAATTTAAAACCTATA
AAGaataattgacatttttcataaTAATCCTTAAACTGTGTTACAAACAG
TACATTTGATTAAACAACGGTGATATATTGCTATAACAAGAAGGTGAGAG
ACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024499-exon-sc0000501-1491911889:70883..71774 | TCONS_00024499-exon-sc0000501-1491911889:70883..71774 | Clytia hemisphaerica | exon |
| TCONS_00024499-exon-sc0000501-1510915933:70883..71774 | TCONS_00024499-exon-sc0000501-1510915933:70883..71774 | Clytia hemisphaerica | exon |
| TCONS_00024499-exon-sc0000501-1575043694:70883..71774 | TCONS_00024499-exon-sc0000501-1575043694:70883..71774 | Clytia hemisphaerica | exon |
| TCONS_00024499-exon-sc0000501-1491911889:71925..72158 | TCONS_00024499-exon-sc0000501-1491911889:71925..72158 | Clytia hemisphaerica | exon |
| TCONS_00024499-exon-sc0000501-1510915933:71925..72158 | TCONS_00024499-exon-sc0000501-1510915933:71925..72158 | Clytia hemisphaerica | exon |
| TCONS_00024499-exon-sc0000501-1575043694:71925..72158 | TCONS_00024499-exon-sc0000501-1575043694:71925..72158 | Clytia hemisphaerica | exon |
| TCONS_00024499-exon-sc0000501-1491911889:72351..72585 | TCONS_00024499-exon-sc0000501-1491911889:72351..72585 | Clytia hemisphaerica | exon |
| TCONS_00024499-exon-sc0000501-1510915933:72351..72585 | TCONS_00024499-exon-sc0000501-1510915933:72351..72585 | Clytia hemisphaerica | exon |
| TCONS_00024499-exon-sc0000501-1575043694:72351..72585 | TCONS_00024499-exon-sc0000501-1575043694:72351..72585 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000501 | supercontig | sc0000501:70883..72585 + |
Blast
The following BLAST results are available for this feature:
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