TCONS_00024482 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024482
Unique NameTCONS_00024482
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024482 ID=TCONS_00024482|Name=TCONS_00024482|organism=Clytia hemisphaerica|type=transcript|length=306bp
aggaaaaaaaaacataattttgaaaatccaattACCTTATTAGAACATCT
CAAAATACTGGTCTATAATACAAGATAGGGATTattgtgacgtcattatt
gaaagaaatgcttttggaaaattgttcttaaagcCACACAAACAATTGAA
TGAGAGTGCTATTTTACCATACCGATGCCAGGGAACTATACACTACCAAC
TACTCTCCAACCACCTCCAACATACCAATAGAAAGTTTTTGTTGTAAAAG
TTTTTGTTGTAAAAGTTTGGAAGCAAATTGAATTACCAGCTTGGAGAcga
tatttt
Run BLAST on NCBI

transcript from alignment at sc0000499:58650..58955

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024482 ID=TCONS_00024482|Name=TCONS_00024482|organism=Clytia hemisphaerica|type=transcript|length=306bp|location=Sequence derived from alignment at sc0000499:58650..58955 (Clytia hemisphaerica)
aaaatatcgTCTCCAAGCTGGTAATTCAATTTGCTTCCAAACTTTTACAA
CAAAAACTTTTACAACAAAAACTTTCTATTGGTATGTTGGAGGTGGTTGG
AGAGTAGTTGGTAGTGTATAGTTCCCTGGCATCGGTATGGTAAAATAGCA
CTCTCATTCAATTGTTTGTGTGgctttaagaacaattttccaaaagcatt
tctttcaataatgacgtcacaatAATCCCTATCTTGTATTATAGACCAGT
ATTTTGAGATGTTCTAATAAGGTaattggattttcaaaattatgtttttt
tttcct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013747XLOC_013747Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024482-exon-sc0000499-1491911889:58650..58955TCONS_00024482-exon-sc0000499-1491911889:58650..58955Clytia hemisphaericaexon
TCONS_00024482-exon-sc0000499-1510915933:58650..58955TCONS_00024482-exon-sc0000499-1510915933:58650..58955Clytia hemisphaericaexon
TCONS_00024482-exon-sc0000499-1575043694:58650..58955TCONS_00024482-exon-sc0000499-1575043694:58650..58955Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000499supercontigsc0000499:58650..58955 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.730989	1.42566	0	0	0	0	0	0	0.923985	1.52601	1.48118	0.730252	0.243079	0	0.20754	0.222722	0.548751	0	0.388529	0	0	0.5171	0.419069	0	0	0	0	0.534857	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024482 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top