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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024477 ID=TCONS_00024477|Name=TCONS_00024477|organism=Clytia hemisphaerica|type=transcript|length=2527bpRun BLAST on NCBI protein sequence of TCONS_00024477-protein >TCONS_00024477-protein ID=TCONS_00024477-protein|Name=TCONS_00024477-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp MTNGKRAMDKYEKISKIGEGSYGVVFKCMNRDNRTIVAIKKFVESEDDQIRun BLAST on NCBI transcript from alignment at sc0000499:239987..255883- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024477 ID=TCONS_00024477|Name=TCONS_00024477|organism=Clytia hemisphaerica|type=transcript|length=15897bp|location=Sequence derived from alignment at sc0000499:239987..255883- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000499:239987..255883- >TCONS_00024477 ID=TCONS_00024477|Name=TCONS_00024477|organism=Clytia hemisphaerica|type=CDS|length=11520bp|location=Sequence derived from alignment at sc0000499:239987..255883- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024477 vs. Swiss-Prot (Human)
Match: CDKL1 (Cyclin-dependent kinase-like 1 OS=Homo sapiens GN=CDKL1 PE=1 SV=5) HSP 1 Score: 454.136 bits (1167), Expect = 4.487e-152 Identity = 226/375 (60.27%), Postives = 275/375 (73.33%), Query Frame = 1
Query: 139 MDKYEKISKIGEGSYGVVFKCMNRDNRTIVAIKKFVESEDDQIIRKIAMREIRMLKQLKHHNLVNLLEVFRRKRKLHLVFEYCDHTVLNELEDHPNGVGENQIKRIVYQVLSAVEFCHKHNCIHRDVKPENILVTKTGIVKLCDFGFARLLTGPTDEYTDYVATRWYRAPELLVGDTQYGPAVDVWAIGCVFAELLSGQALWPGKSDVDQLYLIKKTLGDLIPRHVDIFRSNAFFRGINIPECTRMEPLELRF-QTTKASLSFMKSCLVMEPSERLSCTQLKEHEYFNGFREQFEVELQSLLPNNRSKGKRAGYKTRETRPVKTTTSSETTXXXXXXXXXXXYLPHLSDTS-HPSYHDKDHRKEKKRYDGHLPSI 1257
M+KYEKI KIGEGSYGVVFKC NRD IVAIKKF+ESEDD +I+KIA+REIRMLKQLKH NLVNLLEVFRRKR+LHLVFEYCDHTVL+EL+ + GV E+ +K I +Q L AV FCHKHNCIHRDVKPENIL+TK ++KLCDFGFARLL GP+D YTDYVATRWYR+PELLVGDTQYGP VDVWAIGCVFAELLSG LWPGKSDVDQLYLI+KTLGDLIPRH +F +N +F G+ IP+ MEPLEL+F + +L +K CL M+P++RL+C QL H YF R E++ L + ++ K+R+ T+ + YLP L+ +S P+ +K + + K+ + P+I
Sbjct: 1 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLAGPSDYYTDYVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTQRLTCEQLLHHPYFENIR-----EIEDLAKEHNKPTRKTLRKSRKHHCFTETSKLQ-------------YLPQLTGSSILPALDNKKYYCDTKKLNYRFPNI 357 The following BLAST results are available for this feature:
BLAST of TCONS_00024477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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