TCONS_00024471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024471
Unique NameTCONS_00024471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024471 ID=TCONS_00024471|Name=TCONS_00024471|organism=Clytia hemisphaerica|type=transcript|length=327bp
CCAGCAGAAGTTGTGAGATGATGTCAAGATCGGCGCCGTGTGTTTTGGTC
ATGATAGTTGTTCTGTCGGACGAAGAGAAATATTTCAAGGTGGCCAACGC
TTGCTCATTCGTGATATCAAATTTATCGATTGCATTCTCATCGAACACCC
ATTCTGTGTAATCCGGTTCCACACCACTCTCTGATCCTTGCTCACTGAAT
GGCCCTCCTTCCTGGAGTTCTTCTTCTTTGCCATATTCATATGTATAAAC
TTGTTCTGAGGTGAGATTCTCTACTTCGCAGCCACTACTAGATGGATGGA
ATTCGCTcgtttctatttctttttctt
Run BLAST on NCBI

transcript from alignment at sc0000499:191193..195737-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024471 ID=TCONS_00024471|Name=TCONS_00024471|organism=Clytia hemisphaerica|type=transcript|length=4545bp|location=Sequence derived from alignment at sc0000499:191193..195737- (Clytia hemisphaerica)
CCAGCAGAAGTTGTGAGATGATGTCAAGATCGGCGCCGTGTGTTTTGGTC
ATGATAGTTGTTCTGTCGGACGAAGAGGCTGGAAAGTATGAAAAAGAAGA
TATTAACAATCGACTGGAAATTTACAATTTGCAGAAACTATTTTAACTAT
TAAGTTTCACAAACACAAACTGTCATGCCAAATGAGTGGCATTTTGTAGA
ATTTATTAGTTTGACAGTAAAACCGAATTTAGACAGAGATGTGCAAACAG
CTAAAATACGAAACCCTTAAAGCCGTTTCGGAGCACCTACACATTTCGTT
CATCAGCCACGTGGTATATTCTTCATCTCCCATTTCCCATAATTCATCAG
GAGAAGAAGATAGTATCCCAGAATCCTCCTCTGTATCATTATGACTACCA
AAAGAAGTGGACGTCGCACTTGACGTGTTTAACATCTTTGTTTCAACAGA
TTTTTAAGAAACCTTAGGAGATTTTTCCATATCTTCAGCAACTATGCTGT
TATCATAAAATATGGTAAAAGCTCCAGCTTTTAAAATGACTATCACAAGA
GAAAGTTCTTTCGAATAGTGTTTACACCCTTTACAAGATAGGTAGCATCC
AAAACATCAAACACACAAAAACAAACGTTCTCTGATTTTTCTTCTCAAGT
TTTCCAGTAGAGTTTTAAAGAAATTTCGTCTATTCAAAGTGCAAAGGAGA
TATTATTATTTTGTGAGGAGATAAAAATAAGAAAGAAGACAACAATTATG
AATATATTATTGAAAGACGAAAATAGAGACGAGGGAAGAAAACAAGAAAA
AAACATCTTCTCCCTAAGGGAAGAAAGTGCTTCGTAAGCGAATTCGTGTT
CAATGTTCAATGTTCATTCGGACGAAACTGTAAGTCAACAAAAAGAGGAT
GACGTTTGCTCCTTAGGAGACTTCAGGCCTAATAAAGCATATTGTAATAT
CCCGAGACAACCTTCGTATTTTGTGTAAAAGATCTGACTTTCTTAAAAAT
ATAGTGTGCTTACAAAGCAAAATCTTTCCATTATTCATGATCACTATGTA
ATTGTATGAATTTCAAAATAAATTGAATCGAATTTGAAAGATGAACTCAA
CGGGAGAGCAACACAGGCAGACTCACAAGATGGTAAGTAAATGAAAGAAA
GGAAGAAATCTTAATATACGGAAAACCAAAAAGAACTTCTCTTCAACCTC
AAAATGATCAAGAGAGTTTTCAGTCCGCAGGATACAGATCTACAGCAGGA
AAAATGATTTTTGTAGAAAAAAAATAATTATACTTCTGGTATGAAATGTC
ACAGAAATCATTTCGCGGACTTGGGTCTCATCCTCGAAATTAAAACCTAT
GAGATATTAAATCCTCTTATAACTTTAAATTATTGAGGAGTAATTTTGGT
TAGTGGATAAAATACAGCACAGTCTCTTTAACTGGAACCTCTATAACCCG
AATATATCTCGTCAACTCGAACAAGATACATGGTTTCTTAGAAATTTCCA
TAACTCGAACAAATTTGTGTTCTCCGTGCGTGTCCAAGTTATGGAGACCT
ATGAATTATATCTTAGAGGGAAAATACCAGAAACTCTCACCGTTAAAATG
GCGTTTTCCAAATTGACATCGCTGTTCTTGTGAAAACATCGCATCAACTG
TAACTAACTTTCAAATCGTACAAGTCTCAGGTAGTAGAGCAATTCCTTGT
AAAAGGAATCAAAAATATTTTGTTGATTATGTAAACAATCAAATTGTTTT
AAAGAAAATACTCCAAGTAAGTGGATCACAAAGTTAGTTGGAAATATGAA
ATATTGAACAGACGATATCATCAAAAGCTTACAAAAGACCCAAGAAAACT
TTTTTCTCGAAACTTACTGTAAAATGGGAAAAGTAACAGAAATATTATAT
TGATTTTCCGTTATAATGACTGGAACCCCAGAAGGAGCAATATCACCATG
AGAACAGAACAAGATGAGAACATCAAATAGATAAAAGTAATTAAGGATAG
CAAAGTTGATCAAAAAACCAGTACCGATGAAGTAGTCAGATGTTTAATTT
AACGACATAATGATGAAAAGGTAATACCTCCCATAATCTGTCAGGGAATC
AAACTCCGATTTATACACCCAGTCTCTGTGACGAAGCCAACGGTGATATA
CTTCACAAACAACACTAAGGACCCCTACTGGAATCCCTTTGCTAAACATG
ACCCAATAGAAATAACAAATGAATCCACACATGCCAAACAAAACATATCC
AAGGAGATATTACAAAAAAGTGGCCCCACTAAGATCCCCTTCTTCTTTTC
TTGAATTCTCATAGAGCTCCCTTGTGCCAATGCAAAACTTTTCGTTCTAT
TCACATAAATAAAGAAATTTTCAGTTTATTGTACCCTTTCTGTATCTTCC
ACAGTTAGATAAATCTCAGATTAAATTCCCACCCCTTTAATCACAGAAAC
AGACTCAGAGACAGGGGTGTATATACTTTCAAGGTGTGGTGCCCTACAGC
TAATAAAAAATAAGCCCATACAAAAAATATTAAATGCTTCTTTTTCAATC
ATCATGCTTTTTCGGTTTGAGAGAACAGTCGAAGCTTCAAAAGATATCAG
CAAATACTAAATAGAAAGTGGTCTTGTCACTCCAATTAAAGAAAAACTAT
ACACCCCTGCATGATTTATCGTGCATTTAGGCATAGATAACGAAACAAAT
TACATTAAGGAAGTTTCATAATAACGAGGAAGAAAAATCAAGCAAGACTA
AGAGTCAGCGAAAGTGACATGCACAAATTTCTCAACCATTCAACCATTCA
ATCAAAATTATAAGTAATTACGAAAACGAATCAGAGTAAGTAAAAGAGCA
CATCATTAGAAAAGAGAAAACATTTTAGTTATCATACAGTAACTTTCAAA
AAAAAAGAGAGCAACAATAAACATACAGCAGATGATATGTTGTGTAAACT
TGATAACTAAACAGGTATTTGACCCAAAAAGGTCACCATCACTCGATATT
ATGTAAAAACTCTGATGATCAGTTGTCCCAGATGGCATTTCTATTATTTG
TCAGTTATTGGAGATTAGAACTAGCAAAATCAAAGTTTTTTTTCAGCTGA
CATTCACATAGCTTTTTGGATTGGATTTCTTTGAGCTTACGGCAGGGGTA
CGAGAAAGGTGTTTGTAAAAATCAACATAATTTAAGTTCAAGTTTGAATT
CATGACTGTAGATCATCTTTATGCAAAAAAAACACGTAGTATCAGACAGT
TCTGATCCTGAGCACCAATCCTCGCACAATAAAATAATATTGAACATTCT
TGCATCCGATAAGCAAGGGTAAACTTGGACCTTGAAATTTTGACATCTTT
AAGATAAAAGACAGAAAGAGCTTGAACAAGAAAATCGTTTATCGACTTTG
TATGGCTATTAGAATAATCTCTTAACGTAAATTATTCTTCAAAAATGTTA
ATATCCAGTTCAGCGCTATCTATATATAAACATAACGTTTTTGCATTTAA
TCTCGGTATCCAGATAAAAGGTTTGAAGAGAAATCTTAAAATGCACGAGG
GAGATAAAAATAAGGGGAAGGAGGAAAAATTCTTGAAATTCAAATAGATC
AAAGTAAGATTTCAATTTTAGACAAAACGAAATTATATGCTTATCCAGAC
GAAGTCGTAAATCGATATTTTTGGCTTCCAAGAGTCGGAAAGCCATCCGA
TGTTTAACACTGGACTGAGTGAAAAGAAACTACNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTAAAATCCGAGCCATTACTTTTTAAATTTGACGCACAA
GTTCCCTAGTTATGAGCTTTTAAACTCAAAATTCACTTTTCGGAAAGTGT
AAAAAACAGGTAAATAATACAATGACATGGATACTTTGAAAACACACTTC
AAATACGAAATTTATTACGCTTCCTCTGAAACTCAGTATTTTGCAAATAT
TATTGGTCAAACGAGCCAAAATGTTAGATTCTCTCTAACTCTTCAACTTT
GCTAATAGTTTTCGTCAAATCAAATTCAAAGTAAATTTTCAAAAAACTCC
ATGGGGGACAGCTACTTGAACAATTTGTGTAGTAAAGACTTACAGAAATA
TTTCAAGGTGGCCAACGCTTGCTCATTCGTGATATCAAATTTATCGATTG
CATTCTCATCGAACACCCATTCTGTGTAATCCGGTTCCACACCACTCTCT
GATCCTTGCTCACTGAATGGCCCTCCTTCCTGGAGTTCTTCTTCTTTGCC
ATATTCATATGTATAAACTTGTTCTGAGGTGAGATTCTCTACTTCGCAGC
CACTACTAGATGGATGGAATTCGCTCGTTTCTATTTCTTTTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013739XLOC_013739Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024471-exon-sc0000499-1575043694:195661..195737TCONS_00024471-exon-sc0000499-1575043694:195661..195737Clytia hemisphaericaexon
TCONS_00024471-exon-sc0000499-1575043694:191193..191442TCONS_00024471-exon-sc0000499-1575043694:191193..191442Clytia hemisphaericaexon
TCONS_00024471-exon-sc0000499-1510915933:195661..195737TCONS_00024471-exon-sc0000499-1510915933:195661..195737Clytia hemisphaericaexon
TCONS_00024471-exon-sc0000499-1510915933:191193..191442TCONS_00024471-exon-sc0000499-1510915933:191193..191442Clytia hemisphaericaexon
TCONS_00024471-exon-sc0000499-1491911889:195661..195737TCONS_00024471-exon-sc0000499-1491911889:195661..195737Clytia hemisphaericaexon
TCONS_00024471-exon-sc0000499-1491911889:191193..191442TCONS_00024471-exon-sc0000499-1491911889:191193..191442Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000499supercontigsc0000499:191193..195737 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.565113	1.40748	0	0.666067	12.3217	10.3449	10.1237	12.3216	6.74796	8.13546	0	9.15999	4.64556	6.09957	3.43117	3.95782	13.0992	7.73915	6.58453	9.43283	2.40025	3.18213	9.47398	6.72926	11.9359	11.9414	6.47576	3.73456	7.26017	7.89004
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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