TCONS_00024464 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024464
Unique NameTCONS_00024464
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1933

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024464 ID=TCONS_00024464|Name=TCONS_00024464|organism=Clytia hemisphaerica|type=transcript|length=1933bp
tagCCACAAAAACAAGAATAAAACACAATGGCGATTACAGATAGTATCAA
ACAAATTCTTTCGGTCAAAATCAAGCCTAGACATGATTCCTACTCTGATC
AATTCTCTCGCATCTTCATGGTCAAAATCATGATGATAAGCGCTTTGTTG
GTCGGGTTGAGCTGGTACACCGATAAAATTAATTGTATCATTCCTTCAGC
TCTCGGTGTAGATGGGAACTTCGTAGCTCAAGCATGCTGGATCAACGGTT
TGTACGTTTACAAGGATATTCGTTACCATGTCAACGATATTGGTTACTAT
GGGTTGCCACGGGATATCAATAATGACGGAATGTTCGAAAATGGAGACAT
TTGCGCCACAACTGATTCCTCACATCGAGTGAACGAGAAATGCCGCCCTA
TGGAAAAGACCTTCTATTTACAATACCAGTATATGACCTTCATCATGGCC
GCCCTCGCTGTGTTGTATTACGCCCCATACGCCTTCTTCAGACTGATCAA
CCAAGATATTGTTTCCTTGAAAGGCTCCATAAATGataATGATGCAGAGG
GTATCGTGAAGAATTATTTCAACTACAAGATCAACAGTGAGTTTCGTATG
CGAATGCGAATTATTGGGAATATTATGATCAAACTCCTTTACATTGTTGG
CAATGTTGCAGCTTTCTTGATTGTGGATGGGGTTTTGAACGGTGACTATA
AGACGTATGGTATCACTTGGACCACGTGGTCGAAATTACCCAACTCGATG
GCTTACGATTATATGGGACAACGTTTGAGCGCCAAACCCGGCAACATCTT
GCTACCATCCTTCGCATTCTGTGAAGTACACGAAGCAGCGCAAGATATCA
AGAATGTCATCACTAACAAGCATAAGTTCGTCTGTGAGCTCTCACAACAT
ATCTTGTATCAATATGTCTTCATCATTTGTTGGTTCACTATGGTCATCTC
CATCGCTGTTGCAGTCCTTGGATTCATCATGCAAATTGCTGAACATATTA
TGACAATGGCTTGCTTTATGAAGGGAGGTGCACCAGCAAGGAAAATGTAC
CAAGTGTTGACATTGAGAGAATGTGAATATCTGGAATACATTCGACGCAA
GAACATGCCTTTGTATGGAGCCGTCATTCAAAAGCTGAAAGAAGAGAGAT
ATGACGGTTTGGCCAACGACCAAAAACCGATGTATGACGGTGGAAACTCT
TATGAGATGAATTAAAGTGATTTAGTCAAGCGCACCATATTCTTGTACAg
ataatattttttacaaaaacgaATATTGAATTGGAAAATTCGTGAAAGAG
GGCTTTAGAAACCCGAAAACTGggtccaaaattttaaaagaacaataact
ttgtcacaattttttacactttttttaatagatttgtACAACTTTTTTTA
ACGCAACAGATATTTTTTGAtacaattttacattttatacttTATCATGT
TTTATAGTAGTATTTGTACTATTATTTTGGTTAATTTTCTAActtcaaaa
aaacgaacaaagtCACCAAACTATTTGATGCCATTATAAGTCATTGTCGA
GATCGAAAGCGACCCAAAGGCTCTcttgtctacccgaaggtaggggaggg
tgccaaTCATTTTCTTGGTTTATCCATTTACCCTTGATCATTCTAGTTAG
TTGCTGAGTATCAAGCAGAGAGGTGTCTTCATCTCAACGTTTTGTTTATC
ATCAGAAGAAAATACTTTCGTCTTGGATGAGGTATAGAGACCGAAATAAG
ATGGTTTAACATAATATTCTGTATTTAAGTCAAAGATGACTGAAAATCAG
TTCCTATATAATTTGTTACAGTGCATGGTCGAGAAACAAAGGACGTTATA
AAAGTTCAAATTTGAAGCATGATATAATTGTACTCCAAACTTATCAGTTT
TTACTAACGGTCATATGAAGAGATAAAGGTCGA
Run BLAST on NCBI

transcript from alignment at sc0000499:116618..119835-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024464 ID=TCONS_00024464|Name=TCONS_00024464|organism=Clytia hemisphaerica|type=transcript|length=3218bp|location=Sequence derived from alignment at sc0000499:116618..119835- (Clytia hemisphaerica)
TAGCCACAAAAACAAGAATAAAACACAATGGCGATTACAGATAGTATCAA
ACAAATTCTTTCGGTCAAAATCAAGCCTAGACATGATTCCTACTCTGATC
AATTCTCTCGCATCTTCATGGTCAAAATCATGATGATAAGCGCTTTGTTG
GTCGGGTTGAGCTGGTACACCGATAAAATTAATTGTATCATTCCTTCAGC
TCTCGGTGTAGATGGGAACTTCGTAGCTCAAGCATGCTGGATCAACGGTT
TGTACGTTTACAAGGATATTCGTTACCATGTCAACGATATTGGTTACTAT
GGGTTGCCACGGGATATCAATAATGACGGAATGTTCGAAAATGGAGACAT
TTGCGCCACAACTGATTCCTCACATCGAGTGAACGAGAAATGCCGCCCTA
TGGAAAAGACCTTCTATTTACAATACCAGTATATGACCTTCATCATGGCC
GCCCTCGCTGTGTTGTATTACGCCCCATACGCCTTCTTCAGACTGATCAA
CCAAGATATTGTTTCCTTGAAAGGCTCCATAAATGGTGAGTATCAAATCC
GTTTTAAATTTTGAAGCTTGTAGAGAGCGACAAAGCAACGCCCATCGTTT
TAATGTTTGGATAAGTGCAAGGTGGTACAGCTTTGCAATTATCCAGAATT
TGTAGATTTCTACGAACATAATCAGTACTAAAAATCTGAACCTTTCATTA
CTGTAAGCCCTGCAAAAAATTCCCTTTGTGCACTAAAAGTCAAGCAGTGT
AAGAAATAAACTTCCACGAAAAAATGGAAGTGGGGTTTTACCAATTCCAA
TTGATCGATCGTACTAACCAAACCACAATTTATATCAAGAAGCAAAATGA
TACTTTCTTTCATTATGTTATTCTGTAACTTTATGAGAAAGGTCTGGCCT
GACAAGTGAGAAACCAGAACCTTTGAAAGCATGAGGCGAGTGGATGAAAG
ATTACAATGAATGGATAAAAAATAGATGACGAATGAATTTAAAAAAATGA
ATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAAT
GAATGAATGAATGAATGAATGAACGAATGAATGAATGAATGAATGAATGA
ACAAAAATGTTCCCTTTTTTCTTTCAGATAATGATGCAGAGGGTATCGTG
AAGAATTATTTCAACTACAAGATCAACAGTGAGTTTCGTATGCGAATGCG
AATTATTGGGAATATTATGATCAAACTCCTTTACATTGTTGGCAATGTTG
CAGCTTTCTTGATTGTGGATGGGGTTTTGAACGGTGACTATAAGACGTAT
GGTATCACTTGGACCACGTGGTCGAAATTACCCAACTCGATGGCTTACGA
TTATATGGGTAAGTCGACATTATTGTTTATTCATGGAAGGAATTGGAGTT
TTTTTGGAACAGTGAATTTTTGGATAAATTTCACGATGAAAATCTGCAAT
CTACTTAAGATTTTCAGCTTTTCACTGAGAATTCTCCAAAAAAAGAACTA
TGAAAGGCTTTACATTTTCCCTGTGAAAGAGATTTGACACATCTGAATAA
GTGTAGCTGAAACAGCTTATGATCAATGGTAGTTGATTGGTTAGTCACTC
CAAAATAAAAAAATAATAACATTTTCGAATCTACCATTACAGGACAACGT
TTGAGCGCCAAACCCGGCAACATCTTGCTACCATCCTTCGCATTCTGTGA
AGTACACGAAGCAGCGCAAGATATCAAGAATGTCATCACTAACAAGCATA
AGTTCGTCTGTGAGCTCTCACAACATATCTTGTATCAATATGTCTTCATC
ATTTGTTGGTTCACTATGGTCATCTCCATCGCTGTTGCAGTCCTTGGATT
CATCATGCAAATTGCTGAACATATTATGACAATGGCTTGCTTTATGAAGG
GAGGTGCACCAGCAAGGTTAGTGAACTATTCTCTTGTGTTCTCATTCGGC
GTGTGAGCTTCCATAACCAAAACTCGAGTTATGATATATGAAAAATATTG
AGTTATGGGGACTGGCTTCTAAAGGGTTTGAGAAATGAAGGAATCAGACA
ACTTGTTTAAGTTAAGTAGACCATTCGAGTTTGTTCACATTATGGATAAT
TCGTTGTATTGAGTTAAAGAGACCCTAATGTGAGCCTCAAATATCTCGCT
CGTGTTAATAAGAGACTTGATCTCTTTCACTTAAAGCAGGTAGATTTATG
AAATTTTTGAACGCATTCTAAACGATGAGTATCAGCAACCAGTCTCGTTT
CTTAGTTCATTTTGGAGTCTATTTCACGACCATCTTGTCAAAGATGTATT
CAAATGATCTATTCTCCTCCCATAGGAAAATGTACCAAGTGTTGACATTG
AGAGAATGTGAATATCTGGAATACATTCGACGCAAGAACATGCCTTTGTA
TGGAGCCGTCATTCAAAAGCTGAAAGAAGAGAGATATGACGGTTTGGCCA
ACGACCAAAAACCGATGTATGACGGTGGAAACTCTTATGAGATGAATTAA
AGTGATTTAGTCAAGCGCACCATATTCTTGTACAGATAATATTTTTTACA
AAAACGAATATTGAATTGGAAAATTCGTGAAAGAGGGCTTTAGAAACCCG
AAAACTGGGTCCAAAATTTTAAAAGAACAATAACTTTGTCACAATTTTTT
ACACTTTTTTTAATAGATTTGTACAACTTTTTTTAACGCAACAGATATTT
TTTGATACAATTTTACATTTTATACTTTATCATGTTTTATAGTAGTATTT
GTACTATTATTTTGGTTAATTTTCTAACTTCAAAAAAACGAACAAAGTCA
CCAAACTATTTGATGCCATTATAAGTCATTGTCGAGATCGAAAGCGACCC
AAAGGCTCTCTTGTCTACCCGAAGGTAGGGGAGGGTGCCAATCATTTTCT
TGGTTTATCCATTTACCCTTGATCATTCTAGTTAGTTGCTGAGTATCAAG
CAGAGAGGTGTCTTCATCTCAACGTTTTGTTTATCATCAGAAGAAAATAC
TTTCGTCTTGGATGAGGTATAGAGACCGAAATAAGATGGTTTAACATAAT
ATTCTGTATTTAAGTCAAAGATGACTGAAAATCAGTTCCTATATAATTTG
TTACAGTGCATGGTCGAGAAACAAAGGACGTTATAAAAGTTCAAATTTGA
AGCATGATATAATTGTACTCCAAACTTATCAGTTTTTACTAACGGTCATA
TGAAGAGATAAAGGTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013735XLOC_013735Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024464-exon-sc0000499-1575043694:119301..119835TCONS_00024464-exon-sc0000499-1575043694:119301..119835Clytia hemisphaericaexon
TCONS_00024464-exon-sc0000499-1575043694:118478..118708TCONS_00024464-exon-sc0000499-1575043694:118478..118708Clytia hemisphaericaexon
TCONS_00024464-exon-sc0000499-1575043694:117920..118193TCONS_00024464-exon-sc0000499-1575043694:117920..118193Clytia hemisphaericaexon
TCONS_00024464-exon-sc0000499-1575043694:116618..117510TCONS_00024464-exon-sc0000499-1575043694:116618..117510Clytia hemisphaericaexon
TCONS_00024464-exon-sc0000499-1510915933:119301..119835TCONS_00024464-exon-sc0000499-1510915933:119301..119835Clytia hemisphaericaexon
TCONS_00024464-exon-sc0000499-1510915933:118478..118708TCONS_00024464-exon-sc0000499-1510915933:118478..118708Clytia hemisphaericaexon
TCONS_00024464-exon-sc0000499-1510915933:117920..118193TCONS_00024464-exon-sc0000499-1510915933:117920..118193Clytia hemisphaericaexon
TCONS_00024464-exon-sc0000499-1510915933:116618..117510TCONS_00024464-exon-sc0000499-1510915933:116618..117510Clytia hemisphaericaexon
TCONS_00024464-exon-sc0000499-1491911889:119301..119835TCONS_00024464-exon-sc0000499-1491911889:119301..119835Clytia hemisphaericaexon
TCONS_00024464-exon-sc0000499-1491911889:118478..118708TCONS_00024464-exon-sc0000499-1491911889:118478..118708Clytia hemisphaericaexon
TCONS_00024464-exon-sc0000499-1491911889:117920..118193TCONS_00024464-exon-sc0000499-1491911889:117920..118193Clytia hemisphaericaexon
TCONS_00024464-exon-sc0000499-1491911889:116618..117510TCONS_00024464-exon-sc0000499-1491911889:116618..117510Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000499supercontigsc0000499:116618..119835 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0205787	0.0200675	0.0932012	0.113979	29.1083	21.0619	80.3	74.8044	67.4484	63.5784	65.751	61.5613	95.8686	102.23	182.776	225.987	95.0604	96.9381	126.285	104.796	27.112	29.7763	20.3401	23.4372	17.7279	16.239	6.08181	9.62569	136.104	139.478
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024464 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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