TCONS_00024462 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024462
Unique NameTCONS_00024462
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024462 ID=TCONS_00024462|Name=TCONS_00024462|organism=Clytia hemisphaerica|type=transcript|length=346bp
CGGGTTTTTGAGATTTCGGATCAAGAAGCAGCAGGAGAAGAAGAAGTGTG
GAGAAAGAAGCTGTAACACATGGAAATATCCATTCCTATTTTAATGAATA
GAAGAGAAGAAGgtgccaggattacaaattcaacaaagttggacaacctc
taaagctgacaatacaaTGTAACTTGCTGACAATGATGTAATGAAAATGT
TGCACATATaatgaaaatacaaacaaaGACAAACATTCTTGCAACAATTG
GACCAAGgaactctattgttccaaggtgtGATTTAATATCAATGATACAA
ATGTCATGGAGTTTGGTTtatcaagacacaaatttcacaaaaaaga
Run BLAST on NCBI

transcript from alignment at sc0000499:13194..15231-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024462 ID=TCONS_00024462|Name=TCONS_00024462|organism=Clytia hemisphaerica|type=transcript|length=2038bp|location=Sequence derived from alignment at sc0000499:13194..15231- (Clytia hemisphaerica)
CGGGTTTTTGAGATTTCGGATCAAGAAGCAGCAGGAGAAGAAGAAGTGTG
GAGAAAGAAGCTGTAACACATGGAAATATCCATTCCTATTTTAATGAATA
GAAGAGAAGAAGGTAAGCATAAATTTGGAACAGCTTGCACTTGTCTTTGT
GGCCCATATATTTAGTCTTGATGTCTGATGCTAAAGAAAACTAGATGTTA
AAATATCCCTTTGGCCTGTGTACCTTTTTGTACACTCACTGTGCTGTATA
CCTTTTTGTATAGTTGCTGTGTATCTTTTTGTATGTTCCCCATGTACCTT
TTGTATATATGTTCCCTGTGTACATTTCTGTACTTTCCCTGTGTACCTTT
TGTATGCTTTGTGTGGTCCTTTTGTACGTTTTGTGTGACCTTTTTTGTAC
GCTACCCAGCATGGTCCTTTTTGTATGAGTTTGGTGTGTACCTTTTGTAT
TCCCTCCATAGGTCCTTTTTGTGTGTTCCTGGGTACCTTTTTGTACACTC
CCCATGTACCTCATTGTACGTTCCCAGTGTACCTTATTGTACGTTCCCTG
TGTACCTTATTGTACGTTCCTCGTGTTCCTTATTGTAGTTCCCCGTGTAC
CTTATTGTACGTTCCTCGTGTACCTTATTGTACCTTTCATGTGTACCTTA
TTGTACGTTCCCCGTGTACCTTATTGTACGTTCCCTGTGTACCTTACTGT
ATGTTCCTCATGTACCTTATTGTATGTCCCCCGTGTACCTTACTGTACGT
TCCCCGTGTACCTTATTGTACGTTCCCAGTGTACCTTATTGCAAGTTCCC
TGTGTACCTTATTGCAAGTTCCCCGTGTACCTTATTGCAAGTTCCTCGTG
TACCTTATTGCAAGTTCCCCGTGTTCCTTATTGCAAGTTCCCCGTGTACC
TTATTGCAATTTCCCTGTGTACCTTATCAAGCAGGGAAATCCCTCAATTG
CGGTATACTGTAATTGCAGTAGTTTTCATCCGTGGCTAGCTTATAACTGC
TGCATATAGTGCTGGTCGACAAAGATAAACAAACATCGACTGTAAAAATC
GTACGCGAAGAAAGCTTTTCTTTAGTAAAAGAATCTGATCCTCGGAAAAA
ATATTTTGTCTATGCATTAAAAAGATATGATCAATTATGTACANTTAGTA
AAAGAATCTGATCCACGGAAAAAATATTTTGTCTTCGCGATAAAAAGATA
TGATCAATTATGTACAAAAATTGCCTGTTTTCTCCTTGAATCTTGAATTC
TGTTTCTTGAATACTGCAATTGTGGTATATGAAAAATGTAAAAGTGACGT
TTATACCGCAATTGCAGTAAAAAATTACTACCACAATGGAGGGATTTCCC
TGACTGCTTATTGCATGTTCCTCGTGTACCTTATTGTATGTTCCCCTTGT
ACCTTATTGTATGTTCCCCGTGTACATTATTGTACGTTTCCCCGTGTACC
TTTGTACGTTTCCCATGGTCCTTCTTGTAGGCTCTCCATGTGGTCTTTCT
TGTAGGCTCTCCATGTGGTTTTTTTTGTAGGCTCTCCATGGTCCTTCTTG
TAGGCTCCCGTGACTCTTTTTGTATGTTCCCTGCTGTCCTTTTTGTACTC
TCATGTAAACTTCTTTAATGGCTCAGTCTGGCTCAGTATATATGCATGGC
AAACATAGCCCTAACCATAAAGCAGAGTCTCACACCTTAGAGTCTTTTTT
TCTCGGGAGATTTCAGCGAATGACCACACATTTGGCATTGATTCCTTTAA
AAGAGATTATTTCCCATTATGAAATTTTGAACTTTTCTTTCCTTTCACAT
TCAGGTGCCAGGATTACAAATTCAACAAAGTTGGACAACCTCTAAAGCTG
ACAATACAATGTAACTTGCTGACAATGATGTAATGAAAATGTTGCACATA
TAATGAAAATACAAACAAAGACAAACATTCTTGCAACAATTGGACCAAGG
AACTCTATTGTTCCAAGGTGTGATTTAATATCAATGATACAAATGTCATG
GAGTTTGGTTTATCAAGACACAAATTTCACAAAAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013733XLOC_013733Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024462-exon-sc0000499-1575043694:15120..15231TCONS_00024462-exon-sc0000499-1575043694:15120..15231Clytia hemisphaericaexon
TCONS_00024462-exon-sc0000499-1575043694:13194..13427TCONS_00024462-exon-sc0000499-1575043694:13194..13427Clytia hemisphaericaexon
TCONS_00024462-exon-sc0000499-1510915933:15120..15231TCONS_00024462-exon-sc0000499-1510915933:15120..15231Clytia hemisphaericaexon
TCONS_00024462-exon-sc0000499-1510915933:13194..13427TCONS_00024462-exon-sc0000499-1510915933:13194..13427Clytia hemisphaericaexon
TCONS_00024462-exon-sc0000499-1491911889:15120..15231TCONS_00024462-exon-sc0000499-1491911889:15120..15231Clytia hemisphaericaexon
TCONS_00024462-exon-sc0000499-1491911889:13194..13427TCONS_00024462-exon-sc0000499-1491911889:13194..13427Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000499supercontigsc0000499:13194..15231 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.63637	5.51771	1.75925	1.4343	16.3808	10.2106	5.99283	8.27639	10.6908	11.1518	9.53733	8.88037	10.2808	8.31627	12.3883	9.4906	9.7743	10.7001	20.5715	15.6384	13.4442	12.0774	9.56901	8.84359	3.05838	4.37291	14.7797	11.3904	25.5233	19.4335
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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