TCONS_00024451 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024451
Unique NameTCONS_00024451
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024451 ID=TCONS_00024451|Name=TCONS_00024451|organism=Clytia hemisphaerica|type=transcript|length=583bp
TTATTATCATTAAGGTGTGTCATTACATTGCTATAAATAATATGTTCCAG
GCACTTGCAACAAATCGATGTGAGTGAAACTGGTCGATAATTTTCAGCCT
GGTTCTTATCTTTGTTACCCCCTTTGTACACAGGTACAATAAATGCATGN
GATGTGAGTGAAACTGGTCGATAATTTTCAGCCTGGTTCTTATCTTTGTT
ACCCCCTTTGTACACAGGTACAATTAATGCATGCGTTTGAGGGACAGTTT
GAATATCATTGTGAGGGGTGAAGAAATCTCAGCTGAAAATTCCTTTAGGA
ATCTTGATGATATGCTATCCGGTCCTATTGCTTTCTGTGGATTAAGCCGG
TTAAGTAGCGCTTCGACACCACTTTTGTTTATTTCGATCTCGGACATTGA
ATTCTCAACAGTTGGCGATCTAATGGGTGGTATATCTTTGTTACGAATAG
AGAAAACACTTCAATACTGTTCATTAAGGATATTTGCTTTTTTCCGATCG
TCGATGATAAGACTCCCATTCTTCTTTAATGGGGCAACTGTGATATCgtc
tttttgtttatatttgataaactTGTAAACGCG
Run BLAST on NCBI

transcript from alignment at sc0000492:202675..203257

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024451 ID=TCONS_00024451|Name=TCONS_00024451|organism=Clytia hemisphaerica|type=transcript|length=583bp|location=Sequence derived from alignment at sc0000492:202675..203257 (Clytia hemisphaerica)
CGCGTTTACAagtttatcaaatataaacaaaaagacGATATCACAGTTGC
CCCATTAAAGAAGAATGGGAGTCTTATCATCGACGATCGGAAAAAAGCAA
ATATCCTTAATGAACAGTATTGAAGTGTTTTCTCTATTCGTAACAAAGAT
ATACCACCCATTAGATCGCCAACTGTTGAGAATTCAATGTCCGAGATCGA
AATAAACAAAAGTGGTGTCGAAGCGCTACTTAACCGGCTTAATCCACAGA
AAGCAATAGGACCGGATAGCATATCATCAAGATTCCTAAAGGAATTTTCA
GCTGAGATTTCTTCACCCCTCACAATGATATTCAAACTGTCCCTCAAACG
CATGCATTAATTGTACCTGTGTACAAAGGGGGTAACAAAGATAAGAACCA
GGCTGAAAATTATCGACCAGTTTCACTCACATCNCATGCATTTATTGTAC
CTGTGTACAAAGGGGGTAACAAAGATAAGAACCAGGCTGAAAATTATCGA
CCAGTTTCACTCACATCGATTTGTTGCAAGTGCCTGGAACATATTATTTA
TAGCAATGTAATGACACACCTTAATGATAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013724XLOC_013724Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024451-exon-sc0000492-1491911889:202675..203257TCONS_00024451-exon-sc0000492-1491911889:202675..203257Clytia hemisphaericaexon
TCONS_00024451-exon-sc0000492-1510915933:202675..203257TCONS_00024451-exon-sc0000492-1510915933:202675..203257Clytia hemisphaericaexon
TCONS_00024451-exon-sc0000492-1575043694:202675..203257TCONS_00024451-exon-sc0000492-1575043694:202675..203257Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000492supercontigsc0000492:202675..203257 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.402214	0.970133	0.661255	0.973381	1.66302	1.25857	1.58545	1.25593	0.719432	0.693104	1.05717	0.631764	1.19868	0.786217	0.754107	0.809273	0.712112	0.291957	0.403354	0.890244	1.52027	1.47629	0.326295	0.432585	0.509236	0.936652	0.260145	0	0.210575	0.123936
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024451 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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