TCONS_00024445 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024445
Unique NameTCONS_00024445
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length608

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024445 ID=TCONS_00024445|Name=TCONS_00024445|organism=Clytia hemisphaerica|type=transcript|length=608bp
AGAAAATCGATGtcactcttattaaaaaaaaccaaCACAAAAAAAAGAGT
TgtaatcagaaaaagctaagaCAGCATAGAGAGCAAAACGAAACAGACAA
AATACTTCctatttcaaaatggcggcgagAGCTTCGAGAGAGCTGAACAA
CTTGTTCCTGGAGGCTGTACAAAATGGCCTCAAAAATGATGACATGAAAA
AAACAGTGGACCAGAAAGAcatgatgaaaatgaaacaTACTGCACCACCT
GTCAATTGGTATAAATACGCCGGAATCGTCGGCTTGGTTGGTGTTTTGAT
GGTGTTACAAGTCCCGAAAGAAATGAAAGGACAATACTTTGAATACTACA
GAGCAAAAACAGAAGCTTACTTCAATTTGGAAAGCAGTTGTTTGGTACAC
GGTACTGATTTGACTATTGAAATGGCTCGACCACCAGTTGATTGCTCGGT
TTGCAACGGAATCTCAGAGGTTCCTATCGCATACAATATGACGAAAGAAT
ATTTCATCAAACACCATGCATACAGTGGAGTACCGGTTCTCATCAAAGGA
GGTGTCAAACACTGGAGTGCTCTTGAAACGTTCGACtacaaatatttcaa
acagGTAT
Run BLAST on NCBI

protein sequence of TCONS_00024445-protein

>TCONS_00024445-protein ID=TCONS_00024445-protein|Name=TCONS_00024445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MAARASRELNNLFLEAVQNGLKNDDMKKTVDQKDMMKMKHTAPPVNWYKY
AGIVGLVGVLMVLQVPKEMKGQYFEYYRAKTEAYFNLESSCLVHGTDLTI
EMARPPVDCSVCNGISEVPIAYNMTKEYFIKHHAYSGVPVLIKGGVKHWS
ALETFDYKYFKQV
Run BLAST on NCBI

transcript from alignment at sc0000492:226454..227418-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024445 ID=TCONS_00024445|Name=TCONS_00024445|organism=Clytia hemisphaerica|type=transcript|length=965bp|location=Sequence derived from alignment at sc0000492:226454..227418- (Clytia hemisphaerica)
AGAAAATCGATGTCACTCTTATTAAAAAAAACCAACACAAAAAAAAGAGT
TGTAATCAGAAAAAGCTAAGACAGCATAGAGAGCAAAACGAAACAGACAA
AATACTTCCTATTTCAAAATGGCGGCGAGAGCTTCGAGAGAGCTGAACAA
CTTGTTCCTGGAGGCTGTACAAAATGGCCTCAAAAATGATGACATGAAAA
AAACAGTGGACCAGAAAGACATGATGAAAATGAAACATACTGCACCACCT
GTCAATTGGTATAAATACGCCGGAATCGTCGGCTTGGTTGGTGTTTTGAT
GGTGTTACAAGTCCCGAAAGAAATGAAAGGACAATACTTTGAATACTACA
GAGCAAAAACAGAAGCTTACTTCAATTTGGAAAGCAGTTGTTTGGTACAC
GGTACTGATTTGACTATTGAAATGGCTCGACCACCAGTTGATTGCTCGGT
TTGCAACGGAATCTCAGAGGTTTGTTAACATTCATTCAAAACTGTTCATT
CTAGCGTTTTACTCTGGTATCAATGTTTCGGGATTGTTTCCAAGCTGACA
CACAACGTTGGTTCAACGTTCACAGCGTCCATATCACGTTAGATGAACGT
TGTGTGCCAGCTGGGCTTGAAATTCTATCAACCTGTACCAGATGGGTACG
GATCTTGTCCAAGAACTTTGAACAACAATGTCACTTCAAGACTTCTAAAC
AATGTTTTTCGTGGTGTGTTTTGTCCCAAAAAAAGCTGGCTAAAGGATAT
AAACTAAGAAATTTCTTGTACATTGAAAGTGTTTGTTATTACCATAATAT
CTTTGGATTTCACTTATAATCTTCAGGTTCCTATCGCATACAATATGACG
AAAGAATATTTCATCAAACACCATGCATACAGTGGAGTACCGGTTCTCAT
CAAAGGAGGTGTCAAACACTGGAGTGCTCTTGAAACGTTCGACTACAAAT
ATTTCAAACAGGTAT

Coding sequence (CDS) from alignment at sc0000492:226454..227418-

>TCONS_00024445 ID=TCONS_00024445|Name=TCONS_00024445|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at sc0000492:226454..227418- (Clytia hemisphaerica)
GTTCCTATCGCATACAATATGACGAAAGAATATTTCATCAAACACCATGC
ATACAGTGGAGTACCGGTTCTCATCAAAGGAGGTGTCAAACACTGGAGTG
CTCTTGAAACGTTCGACTACAAATATTTCAAACAGGTAATGGCGGCGAGA
GCTTCGAGAGAGCTGAACAACTTGTTCCTGGAGGCTGTACAAAATGGCCT
CAAAAATGATGACATGAAAAAAACAGTGGACCAGAAAGACATGATGAAAA
TGAAACATACTGCACCACCTGTCAATTGGTATAAATACGCCGGAATCGTC
GGCTTGGTTGGTGTTTTGATGGTGTTACAAGTCCCGAAAGAAATGAAAGG
ACAATACTTTGAATACTACAGAGCAAAAACAGAAGCTTACTTCAATTTGG
AAAGCAGTTGTTTGGTACACGGTACTGATTTGACTATTGAAATGGCTCGA
CCACCAGTTGATTGCTCGGTTTGCAACGGAATCTCAGAGGTTCCTATCGC
ATACAATATGACGAAAGAATATTTCATCAAACACCATGCATACAGTGGAG
TACCGGTTCTCATCAAAGGAGGTGTCAAACACTGGAGTGCTCTTGAAACG
TTCGACTACAAATATTTCAAACAGGTAATGGCGGCGAGAGCTTCGAGAGA
GCTGAACAACTTGTTCCTGGAGGCTGTACAAAATGGCCTCAAAAATGATG
ACATGAAAAAAACAGTGGACCAGAAAGACATGATGAAAATGAAACATACT
GCACCACCTGTCAATTGGTATAAATACGCCGGAATCGTCGGCTTGGTTGG
TGTTTTGATGGTGTTACAAGTCCCGAAAGAAATGAAAGGACAATACTTTG
AATACTACAGAGCAAAAACAGAAGCTTACTTCAATTTGGAAAGCAGTTGT
TTGGTACACGGTACTGATTTGACTATTGAAATGGCTCGACCACCAGTTGA
TTGCTCGGTTTGCAACGGAATCTCAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013719XLOC_013719Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024445-proteinTCONS_00024445-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024445-exon-sc0000492-1575043694:226950..227418TCONS_00024445-exon-sc0000492-1575043694:226950..227418Clytia hemisphaericaexon
TCONS_00024445-exon-sc0000492-1575043694:226454..226592TCONS_00024445-exon-sc0000492-1575043694:226454..226592Clytia hemisphaericaexon
TCONS_00024445-exon-sc0000492-1510915933:226950..227418TCONS_00024445-exon-sc0000492-1510915933:226950..227418Clytia hemisphaericaexon
TCONS_00024445-exon-sc0000492-1510915933:226454..226592TCONS_00024445-exon-sc0000492-1510915933:226454..226592Clytia hemisphaericaexon
TCONS_00024445-exon-sc0000492-1491911889:226950..227418TCONS_00024445-exon-sc0000492-1491911889:226950..227418Clytia hemisphaericaexon
TCONS_00024445-exon-sc0000492-1491911889:226454..226592TCONS_00024445-exon-sc0000492-1491911889:226454..226592Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000492supercontigsc0000492:226454..227418 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.06825	5.28917	0.805408	0.984957	26.4999	23.5937	207.37	218.324	215.869	206.319	140.622	117.133	64.7536	55.9472	108.351	56.4048	81.3675	78.5415	62.9506	107.415	33.7001	36.7333	36.702	43.1923	51.647	55.3807	51.817	51.6572	8.88215	9.15005
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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