TCONS_00024438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024438
Unique NameTCONS_00024438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length788

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024438 ID=TCONS_00024438|Name=TCONS_00024438|organism=Clytia hemisphaerica|type=transcript|length=788bp
CCATTTATGATTGTCAAACAGTATAACATGAAGATGATGCAAATATCAAG
TAATGTGACAAAAGGGCTCGCAGGGGTGTATTATTTGGAAAGCCatattt
gaaacttttgaaacaaGAAGTTATGGCTTTTGCTAAAGAACGTCTTGGTG
AAACTTACGATATTGATGAGATGAAAAAGAGACTGAATGGAATCAGGAGA
CAAATTGACGATAATGAtcacaaaattaacaaaatgctTGAAAAGCAGAT
TGAGCTCGAaagggaagaaaaaaaacttgttcACGCATTAGGGGAAAATG
CTCCGCCAAAGAGACGTTTTGGACCATCACTGAATTATGGTAACAGAATG
CCATGCACAATgtgaataaaaacaaaccactttttttgcatcagtgtgca
caGAAAATTTGGCTCATCTGAGAAAAGATTAAATACGACACTGTAAAAGA
TGAAACCTTTAATAATCACctagccaatttttttttacaatgttGGACAA
TTTTAATGAATACAATGGGTTTGGAGCTGAGATTCAAGTAATATCAAGGT
TGTTGCTGGGCGAGATACTGATTTTATATACACAAAAAGCTCCTCCGAca
gttttatacttttttttttctttgatatcATTTGTTTGGTAAGGATTTTG
TAAATATTAAAGATATCCATTTTACGAgcctttttatcatttttgttaaT
AATTTTTAACCAGAGTAGAAAGTATTTAAACCTtatttatttgataattt
tgattgaATCAGATTTCATTCTGAGGTTGGAAGTgtct
Run BLAST on NCBI

transcript from alignment at sc0000492:195069..196215-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024438 ID=TCONS_00024438|Name=TCONS_00024438|organism=Clytia hemisphaerica|type=transcript|length=1147bp|location=Sequence derived from alignment at sc0000492:195069..196215- (Clytia hemisphaerica)
CCATTTATGATTGTCAAACAGTATAACATGAAGATGATGCAAATATCAAG
TAATGTGACAAAAGGGTAATTTTCTCAGAATTTCTGATTACCTTTTTCTG
AAAATCTATGTTTGTTGGTTGTAATAAAAAACTCATGTCACTTTGCATAG
TTCACTTTCAAGGACACAAAAATAATATTTTATTTCTCACTCAATCTAGG
CTCGCAGGGGTGTATTATTTGGAAAGCCATATTTGAAACTTTTGAAACAA
GAAGTTATGGCTTTTGCTAAAGAACGTCTTGGTGAAACTTACGATATTGA
TGAGATGAAAAAGAGACTGAATGGAATCAGGAGACAAATTGACGATAATG
ATCACAAAATTAACAAAATGCTTGAAAAGCAGGTTTGAATTGATAAATTT
TGCTTGTTTAAAAATCTAAGTTTGTCTCTGATTATTCAACAAAGCCCTTA
TCAGGATTGATGATGTGTTTAAAGTTCTTCTGACTTGGCGCTTCCAAAGA
AAGTGAAAAGATATACCATTTTAGTCTCCATGCTAAGCAGAAGTTTAAAG
AGTCGGAGATAATTATTGTGTATATAAAGCATTTCTTACATTTCATTTAC
TTTTTAGATTGAGCTCGAAAGGGAAGAAAAAAAACTTGTTCACGCATTAG
GGGAAAATGCTCCGCCAAAGAGACGTTTTGGACCATCACTGAATTATGGT
AACAGAATGCCATGCACAATGTGAATAAAAACAAACCACTTTTTTTGCAT
CAGTGTGCACAGAAAATTTGGCTCATCTGAGAAAAGATTAAATACGACAC
TGTAAAAGATGAAACCTTTAATAATCACCTAGCCAATTTTTTTTTACAAT
GTTGGACAATTTTAATGAATACAATGGGTTTGGAGCTGAGATTCAAGTAA
TATCAAGGTTGTTGCTGGGCGAGATACTGATTTTATATACACAAAAAGCT
CCTCCGACAGTTTTATACTTTTTTTTTTCTTTGATATCATTTGTTTGGTA
AGGATTTTGTAAATATTAAAGATATCCATTTTACGAGCCTTTTTATCATT
TTTGTTAATAATTTTTAACCAGAGTAGAAAGTATTTAAACCTTATTTATT
TGATAATTTTGATTGAATCAGATTTCATTCTGAGGTTGGAAGTGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013717XLOC_013717Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024438-exon-sc0000492-1575043694:196151..196215TCONS_00024438-exon-sc0000492-1575043694:196151..196215Clytia hemisphaericaexon
TCONS_00024438-exon-sc0000492-1575043694:195834..196016TCONS_00024438-exon-sc0000492-1575043694:195834..196016Clytia hemisphaericaexon
TCONS_00024438-exon-sc0000492-1575043694:195069..195608TCONS_00024438-exon-sc0000492-1575043694:195069..195608Clytia hemisphaericaexon
TCONS_00024438-exon-sc0000492-1510915933:196151..196215TCONS_00024438-exon-sc0000492-1510915933:196151..196215Clytia hemisphaericaexon
TCONS_00024438-exon-sc0000492-1510915933:195834..196016TCONS_00024438-exon-sc0000492-1510915933:195834..196016Clytia hemisphaericaexon
TCONS_00024438-exon-sc0000492-1510915933:195069..195608TCONS_00024438-exon-sc0000492-1510915933:195069..195608Clytia hemisphaericaexon
TCONS_00024438-exon-sc0000492-1491911889:196151..196215TCONS_00024438-exon-sc0000492-1491911889:196151..196215Clytia hemisphaericaexon
TCONS_00024438-exon-sc0000492-1491911889:195834..196016TCONS_00024438-exon-sc0000492-1491911889:195834..196016Clytia hemisphaericaexon
TCONS_00024438-exon-sc0000492-1491911889:195069..195608TCONS_00024438-exon-sc0000492-1491911889:195069..195608Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000492supercontigsc0000492:195069..196215 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.139578	0.0668087	0	0	0	0	0	0	0.0812761	0	0	0.124081	0	0	0.0475257	0	0.0641498	0.0643552	0	0	0.082113	0.120502	0.683119	0.130669	0	0	0	0	0.348655	0.877216
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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