TCONS_00024427 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024427
Unique NameTCONS_00024427
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length625

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024427 ID=TCONS_00024427|Name=TCONS_00024427|organism=Clytia hemisphaerica|type=transcript|length=625bp
gcaCAGTAGAAGAATGCTAACCCAATCCTTAgatctttttttatgattgt
gGCTATAGGGGCACTACAACACAACACAGTCAGTAATCTATTCAAGTCCA
TTGTTTTCCAAAATCTTCAGACATTTAAGGTGGATATGAGATAATACAAT
TCCTTGGCGCTCGCCAGCTTTGATGCCACTAAAAGTGTTCATGTGCTCTT
TAATAATATTGTTGTATTGTTAGTGTATTTTAGTCCAACCAAAATTGTTA
ATAGTCTCGACAGAAGGCATACTTTACAGCAGTTTAGTTGAAGGGGAGCC
GACGATAATTGTCAGAGAGCAATATCACAGACCAGAAAACTAACTCTCCA
TTCTCTCATCCAATCTGGTTTACAGTGTTCTTGGTCATGAAAACTCTTGG
TGAATGTTCAGTTAAATACCATGTTCGGGTTGTATTCTGGATTCGCATAT
TGTGCCTGAAGATTATAGacaaaacaagtaatactttaatggacctacct
atttataaaacgaataattagaatttaatggaagtaatgtataattctaa
atttcgatttatatatgtattggaacggagaaagcaattaagaaacgcat
cgatgtttaacggtgaaagaaaaat
Run BLAST on NCBI

transcript from alignment at sc0000492:122236..122931+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024427 ID=TCONS_00024427|Name=TCONS_00024427|organism=Clytia hemisphaerica|type=transcript|length=696bp|location=Sequence derived from alignment at sc0000492:122236..122931+ (Clytia hemisphaerica)
gcaCAGTAGAAGAATGCTAACCCAATCCTTAgatctttttttatgattgt
gGCTATAGGGGCACTACAACACAACACATTCAGTAATCTATTCAAGTCGA
TTGTTTTCCAAAATCTCNTGTGGCTATAGGGGCACTACCACACAACACAG
TCAGTAATCTATTCAAGTCCATTGTTTTCCAAAATCTTCAGACATTTAAG
GTGGATATGAGATAATACAATTCCTTGGCGCTCGCCAGCTTTGATGCCAC
TAAAAGTGTTCATGTGCTCTTTAATAATATTGTTGTATTGTTAGTGTATT
TTAGTCCAACCAAAATTGTTAATAGTCTCGACAGAAGGCATACTTTACAG
CAGTTTAGTTGAAGGGGAGCCGACGATAATTGTCAGAGAGCAATATCACA
GACCAGAAAACTAACTCTCCATTCTCTCATCCAATCTGGTTTACAGTGTT
CTTGGTCATGAAAACTCTTGGTGAATGTTCAGTTAAATACCATGTTCGGG
TTGTATTCTGGATTCGCATATTGTGCCTGAAGATTATAGacaaaacaagt
aatactttaatggacctacctatttataaaacgaataattagaatttaat
ggaagtaatgtataattctaaatttcgatttatatatgtattggaacgga
gaaagcaattaagaaacgcatcgatgtttaacggtgaaagaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013710XLOC_013710Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024427-exon-sc0000492-1491911889:122236..122312TCONS_00024427-exon-sc0000492-1491911889:122236..122312Clytia hemisphaericaexon
TCONS_00024427-exon-sc0000492-1510915933:122236..122312TCONS_00024427-exon-sc0000492-1510915933:122236..122312Clytia hemisphaericaexon
TCONS_00024427-exon-sc0000492-1575043694:122236..122312TCONS_00024427-exon-sc0000492-1575043694:122236..122312Clytia hemisphaericaexon
TCONS_00024427-exon-sc0000492-1491911889:122384..122931TCONS_00024427-exon-sc0000492-1491911889:122384..122931Clytia hemisphaericaexon
TCONS_00024427-exon-sc0000492-1510915933:122384..122931TCONS_00024427-exon-sc0000492-1510915933:122384..122931Clytia hemisphaericaexon
TCONS_00024427-exon-sc0000492-1575043694:122384..122931TCONS_00024427-exon-sc0000492-1575043694:122384..122931Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000492supercontigsc0000492:122236..122931 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.07331	2.44485	1.10989	1.82353	1.16853	1.47462	5.22714	6.7205	2.00989	1.5989	0.893406	0.548363	2.13177	2.49436	3.69865	3.7027	3.48525	1.92	0.246422	0.544469	4.08067	5.96704	2.85969	4.16891	1.43183	1.34754	2.41489	3.04188	0.351648	0.898148
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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