TCONS_00024425 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024425
Unique NameTCONS_00024425
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length392

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024425 ID=TCONS_00024425|Name=TCONS_00024425|organism=Clytia hemisphaerica|type=transcript|length=392bp
ggagacataaGAGTTTTAAAGGTTCGAtctaaagagactctactgtattt
caTATGTTTTATAAAGAAACTAAGGTAAATATTACCATTTAAATTGTCTG
TTCATATTGACAGTCagcacaaaaaagtttcttccAATTGGAACCGAGAT
TGGAACGTTTCAAAGGAGACCTAGAGTTTAAACTGCAGCTAATATTTCCC
TCTTTTTCACTACCTGTTATGAGCCCAGCTGGCACcattcgacgtttatc
taacgttcacaacgtccatataacgttagattaacgttgaaacaacgttg
tgtgccagctgggagtgTAAAGGTGAGTATTAGgtttaaaaaagtatttc
aCTAAGCTTTCCATTTGACATCTTAGaaacttaaaacttaaa
Run BLAST on NCBI

transcript from alignment at sc0000491:217957..218348

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024425 ID=TCONS_00024425|Name=TCONS_00024425|organism=Clytia hemisphaerica|type=transcript|length=392bp|location=Sequence derived from alignment at sc0000491:217957..218348 (Clytia hemisphaerica)
tttaagttttaagtttCTAAGATGTCAAATGGAAAGCTTAGtgaaatact
tttttaaacCTAATACTCACCTTTAcactcccagctggcacacaacgttg
tttcaacgttaatctaacgttatatggacgttgtgaacgttagataaacg
tcgaatgGTGCCAGCTGGGCTCATAACAGGTAGTGAAAAAGAGGGAAATA
TTAGCTGCAGTTTAAACTCTAGGTCTCCTTTGAAACGTTCCAATCTCGGT
TCCAATTggaagaaacttttttgtgctGACTGTCAATATGAACAGACAAT
TTAAATGGTAATATTTACCTTAGTTTCTTTATAAAACATAtgaaatacag
tagagtctctttagaTCGAACCTTTAAAACTCttatgtctcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013708XLOC_013708Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024425-exon-sc0000491-1491911889:217957..218348TCONS_00024425-exon-sc0000491-1491911889:217957..218348Clytia hemisphaericaexon
TCONS_00024425-exon-sc0000491-1510915933:217957..218348TCONS_00024425-exon-sc0000491-1510915933:217957..218348Clytia hemisphaericaexon
TCONS_00024425-exon-sc0000491-1575043694:217957..218348TCONS_00024425-exon-sc0000491-1575043694:217957..218348Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000491supercontigsc0000491:217957..218348 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.290223	0	0.29108	1.56865	1.23957	1.01589	0.700027	0.531341	0.20969	0	0.397854	0.661126	0.407724	0.470327	0.139442	13.4189	10.648	0	0.464934	14.717	13.6604	4.79893	4.06673	1.6099	0.989064	22.1033	21.926	0	0.22435
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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