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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024414 ID=TCONS_00024414|Name=TCONS_00024414|organism=Clytia hemisphaerica|type=transcript|length=5239bpRun BLAST on NCBI transcript from alignment at sc0000491:95077..123886- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024414 ID=TCONS_00024414|Name=TCONS_00024414|organism=Clytia hemisphaerica|type=transcript|length=28810bp|location=Sequence derived from alignment at sc0000491:95077..123886- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00024414 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3) HSP 1 Score: 2586.6 bits (6703), Expect = 0.000e+0 Identity = 1270/1750 (72.57%), Postives = 1469/1750 (83.94%), Query Frame = 1
Query: 1 QSWVQKLSNSTDILENWMVVQNLWIYLEAVFVGGDIARQLPREAKRFSGIDKNWQKIMQRAHEMPNVVVCCTGDEAXXXXXXXXXXXXXXXXKSLSGYLEKKRLIFPRFFFVSDPALLEILGQASDSHTIQNHLLNVFDNTKHVEFHEKDYDKILAVISKEGEKVVLDKYVMAFGNVEEWLNNLLKMSQSSVHGVIRQAYHAINDSNFDVMEFLGTFPAQIGLLGLQMLWTRDSTDALQNNKYDKKVMSETNQAFLELLNLLIEQTTKDLSSVERTKYESLITIHVHQRDIFDDLVKMHIKSPNDFEWLKQIRFYFLEDMDQCLVSITDVDFKYQNEFIGCVERLVITPLTDRCYITLAQALNMSMGASPAGPAGTGKTETVKDMGKALGKYVIVFNCSDQLDYRGLGRIFKGLAQSGSWGCFDEFNRIDLPVLSVAAQQIHVILSCKKERKPEFLFTDGDTVAMNPEFGLFLTMNPGYAGRQELPENLKVQFRTVAMMVPDRQIIIRVKLASCGFLDNIILARKFFTLYKLCEEQLTKQVHYDFGLRNMLSVLRTLGQAKRNNPSDSESKIVMRVLRDMNLSKLVDEDEPLFLSLINDLFPAISLDKAGYPNLEAAIDAKCQESGLVNHPSWSLKLIQLYETQRVRHGMMALGPSGTGKTTCIHTLMKAMTEIGLPHREYRMNPKAITAPQMFGKLDVATNDWTDGIFSTLWRKTLRAKKGERIWIVLDGPVDAIWIENLNSVLDDNKTLTLANGDRIPMSPFCKVVFEPHNIDNASPATVSRNGMVYMSSSCLDWRPILEAWLLKRDLVEAETLRTLYHKSFQELLIFMTENVSPKIELLECNYVTQSINVLNGLLPTPSEGTTFSPQHVSKLYVFALMWSLGATLELDDRAKMEIFIKNHL--DLDLPNIDETSSQTIFEYFVDKEGKWCHWSSRVEEYIYPTDHNPEYSSILVPNVDNVRTNFLIDTIAKQGKAALLIGEQGTAKTIMIQSYMKHYDPEVHLTKRFNFSSASTPMHFQRTIESYVDKRMGSTYGPVAGKRMSVFIDDINMPVINEWGDQVTNEIVRQLMSDGGFYNLDKPGDFTTIVDIQFLAAMIHPGGGRKDIPERLKRQFSIFNCTLPSNNSIDKIFGVICRGHFCKKRGFTDEVRTLANDLVACTRRLWQYTKVKMLPTPAKFHYVFNLRDLSRIWQGMLNAVSDVITETSTLLSLWQHECTRVICDRFVNETDKSWFRKVAVQICNEEIGANHDL--SCLEEEAYFVDFLRDAPEPTGDEPDDADFEAPKIYEPIESMVSLRERLSHFMHQYNESVRGSGLDLVFFEDAITSLLKISRILATPRGNALLVGVGGSGKQSLTRLASFIAGYKTFQITITRSYNLTNLMEDLKYLYRVAGEQGKGITFVFTDQEVKDEGFLEYLNNVLSSGEVSNLFARDEIDEITSELIPVMKKEYPRRPSTSENLYEYFINRARSNLHVVLCFSPVGEKFRQRALQFPGLISGCTINWFQRWPKEALIQVAMHYLSNFEIKCTEETKNELVKAMGSIHDGVAVYCKDYFERFRRQTHVTPKSYLSFMNSYKQVYAAQKTEIDGLAHRMNIGLDKLMEASRSXXXXXXXXXXXXXXXXXXSVKAEAVLKEVTQTAHAAEKVKSQVQEVKDRAQAIVDVIGEDXXXXXXXXXXXXXXXXXXXXXXQTIKAADIATVRRLGKPPPLIMRIMDCVLILSRKGLDPVTPDPDRPGNKASWSESLRL 5238
Q WVQ LSNSTDI+E+WM VQNLWIYLEAVFVGGDIA+QLP+EAKRFS IDK+W KIM RAHE+P+VV CC GDE L QLLPHL +QLE+CQKSL+GYLEKKRL FPRFFFVSDPALLEILGQASDSHTIQ HLLNVFDN K V+FHEK YD+IL++ S+EGE + LDK VMA GNVE WLN+LL+ SQSS+H VIRQA I ++ F + EFL +FPAQ+GLLG+QM+WTRDS +AL+N K+DKK+M +TNQAFLELLN LI+ TT+DLSS ER KYE+LITIHVHQRDIFDDL MHIKSP DFEWLKQ RFYF ED D+ ++ ITDV F YQNEF+GC +RLVITPLTDRCYITLAQAL MSMG +PAGPAGTGKTET KDMG+ LGKYV+VFNCSDQ+D+RGLGRIFKGLAQSGSWGCFDEFNRIDLPVLSVAAQQI +IL+CKKE K F+FTDGD V MNPEFGLFLTMNPGYAGRQELPENLK+ FR+VAMMVPDRQIIIRVKLASCGF+DN++LARKFFTLYKLCEEQL+KQVHYDFGLRN+LSVLRTLG AKR NP D+ES IVMRVLRDMNLSKL+DEDEPLFLSLI DLFP I LDKAGYP LEAAI + +E+GL+NHP W LK+IQL+ETQRVRHGMM LGPSG GKTTCIHTLM+AMT+ G PHRE RMNPKAITAPQMFG+LDVATNDWTDGIFSTLWRKTLRAKKGE IWI+LDGPVDAIWIENLNSVLDDNKTLTLANGDRIPM+P CK++FEPHNIDNASPATVSRNGMV+MSSS LDW PILE +L KR EAE LR LY +SF +L F +N+ K+E+LE +TQSIN+L GL+P +G S H+ +L+VFAL+WS GA LELD R ++E+++++ L+LP T F+Y+V +G W HW++R +EY+YP+D PEY SILVPNVDNVRT+FLI TIAKQGKA LLIGEQGTAKT++I+ +M YDPE H+ K NFSSA+TP+ FQRTIESYVDKRMG+TYGP AGK+M+VFIDD+NMP+INEWGDQVTNEIVRQLM GFYNL+KPG+FT+IVDIQFLAAMIHPGGGR DIP+RLKRQFSIFNCTLPS S+DKIFGVI GH+C +RGF++EVR LV TRRLWQ TK+KMLPTPAKFHYVFNLRDLSR+WQGMLN S+VI E + LL LW+HEC RVI DRF +D +WF K V + EE G L C + YFVDFLRDAPE G+ ++AD E PKIYEPIES L+ERL+ F+ YNES+RG+G+D+VFF DA+ L+KISR++ TP+GNALLVGVGGSGKQSLTRLASFIAGY +FQIT+TRSYN +NLMEDLK LYR AG+QGKGITF+FTD E+KDE FLEY+NNVLSSGEVSNLFARDEIDEI S+L VMKKE+PR T+ENL++YF++R R NLH+VLCFSPVGEKFR RAL+FP LISGCTI+WF RWPK+AL+ V+ H+L++++I C+ E K E+V+ MGS DGVA C DYF+RFRR THVTPKSYLSF+ YK +Y + E+ LA+RMN GL+KL EAS SVA LSKEL KEKEL VA+ KA+ VLKEVT A AAEKVK++VQ+VKDRAQAIVD I +DKA+AE KLEAAKPALEEAEAALQTI+ +DIATVR LG+PP LIMRIMDCVL+L ++ + V D ++ SW ESL+L
Sbjct: 1609 QKWVQYLSNSTDIIESWMTVQNLWIYLEAVFVGGDIAKQLPKEAKRFSNIDKSWVKIMTRAHEVPSVVQCCVGDETLGQLLPHLLDQLEICQKSLTGYLEKKRLCFPRFFFVSDPALLEILGQASDSHTIQAHLLNVFDNIKSVKFHEKIYDRILSISSQEGETIELDKPVMAEGNVEVWLNSLLEESQSSLHLVIRQAAANIQETGFQLTEFLSSFPAQVGLLGIQMIWTRDSEEALRNAKFDKKIMQKTNQAFLELLNTLIDVTTRDLSSTERVKYETLITIHVHQRDIFDDLCHMHIKSPMDFEWLKQCRFYFNEDSDKMMIHITDVAFIYQNEFLGCTDRLVITPLTDRCYITLAQALGMSMGGAPAGPAGTGKTETTKDMGRCLGKYVVVFNCSDQMDFRGLGRIFKGLAQSGSWGCFDEFNRIDLPVLSVAAQQISIILTCKKEHKKSFIFTDGDNVTMNPEFGLFLTMNPGYAGRQELPENLKINFRSVAMMVPDRQIIIRVKLASCGFIDNVVLARKFFTLYKLCEEQLSKQVHYDFGLRNILSVLRTLGAAKRANPMDTESTIVMRVLRDMNLSKLIDEDEPLFLSLIEDLFPNILLDKAGYPELEAAISRQVEEAGLINHPPWKLKVIQLFETQRVRHGMMTLGPSGAGKTTCIHTLMRAMTDCGKPHREMRMNPKAITAPQMFGRLDVATNDWTDGIFSTLWRKTLRAKKGEHIWIILDGPVDAIWIENLNSVLDDNKTLTLANGDRIPMAPNCKIIFEPHNIDNASPATVSRNGMVFMSSSILDWSPILEGFLKKRSPQEAEILRQLYTESFPDLYRFCIQNLEYKMEVLEAFVITQSINMLQGLIPLKEQGGEVSQAHLGRLFVFALLWSAGAALELDGRRRLELWLRSRPTGTLELPP-PAGPGDTAFDYYVAPDGTWTHWNTRTQEYLYPSDTTPEYGSILVPNVDNVRTDFLIQTIAKQGKAVLLIGEQGTAKTVIIKGFMSKYDPECHMIKSLNFSSATTPLMFQRTIESYVDKRMGTTYGPPAGKKMTVFIDDVNMPIINEWGDQVTNEIVRQLMEQNGFYNLEKPGEFTSIVDIQFLAAMIHPGGGRNDIPQRLKRQFSIFNCTLPSEASVDKIFGVIGVGHYCTQRGFSEEVRDSVTKLVPLTRRLWQMTKIKMLPTPAKFHYVFNLRDLSRVWQGMLNTTSEVIKEPNDLLKLWKHECKRVIADRFTVSSDVTWFDKALVSLVEEEFGEEKKLLVDC-GIDTYFVDFLRDAPEAAGETSEEADAETPKIYEPIESFSHLKERLNMFLQLYNESIRGAGMDMVFFADAMVHLVKISRVIRTPQGNALLVGVGGSGKQSLTRLASFIAGYVSFQITLTRSYNTSNLMEDLKVLYRTAGQQGKGITFIFTDNEIKDESFLEYMNNVLSSGEVSNLFARDEIDEINSDLASVMKKEFPRCLPTNENLHDYFMSRVRQNLHIVLCFSPVGEKFRNRALKFPALISGCTIDWFSRWPKDALVAVSEHFLTSYDIDCSLEIKKEVVQCMGSFQDGVAEKCVDYFQRFRRSTHVTPKSYLSFIQGYKFIYGEKHVEVRTLANRMNTGLEKLKEASESVAALSKELEAKEKELQVANDKADMVLKEVTMKAQAAEKVKAEVQKVKDRAQAIVDSISKDKAIAEEKLEAAKPALEEAEAALQTIRPSDIATVRTLGRPPHLIMRIMDCVLLLFQRKVSAVKIDLEKSCTMPSWQESLKL 3356 The following BLAST results are available for this feature:
BLAST of TCONS_00024414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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