TCONS_00024412 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024412
Unique NameTCONS_00024412
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length615

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024412 ID=TCONS_00024412|Name=TCONS_00024412|organism=Clytia hemisphaerica|type=transcript|length=615bp
AGGTTTGTGGTAACGTAGCTGGGTTGTGTTCGTGGACGAAAGCAATGGCC
AAATTTTTCTCCGTCAACAAAGAAGTCCTTCCTCTTAAAGCAAACCTTTC
AATTCAAGAGGCAAAGTTAGAACTGGCGATGAGTGATTTGCAAACAGCTC
AACAACAGTTGGACGAAAAACAGAAAGAATTAGACGCCGCACAGGCAGAA
TATGAAAGTGCCATGCGCGAAAAACAGGTAAGAAACCCAGGGTAGATTCT
GTTGCGAATGTTTTTACTCTTAAAACTGACTTTCTATGCATCAAGGTGTT
TGAGTGTTATCAAGAAATATCACAAAATATTGACTACGAGTATACTCGTG
GAAGAGGGCTCAAAATACAGATAGAACTTTGAcgtgttaaaggttttatt
tttacataagaaaGCCTAAGCGGCGTAAAGACCCATAGCAGTGTTAACAT
TTGCAATACAAATTTACAGgagtaaatttttttgatgtatTGACTCGAGT
CGCGCGagtaataaaaatttaatttaattactttaatattttgagagaaa
gaaagatttgaccatATAAGTTGGAGGtattgattatgtgtgttttttTC
TTACGCATGTGCACA
Run BLAST on NCBI

transcript from alignment at sc0000491:91036..93028-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024412 ID=TCONS_00024412|Name=TCONS_00024412|organism=Clytia hemisphaerica|type=transcript|length=1993bp|location=Sequence derived from alignment at sc0000491:91036..93028- (Clytia hemisphaerica)
AGGTTTGTGGTAACGTAGCTGGGTTGTGTTCGTGGACGAAAGCAATGGCC
AAATTTTTCTCCGTCAACAAAGAAGTCCTTCCTCTTAAAGTNCATTTTCT
TAAAGCTCTTTTTCTAAAAAAACCTCTATATTTTCCTTCGTGTAGTAGGA
ATTTTGTATAGTTGCATCGACTTACTTTTTACGTTTTTTTTATCTAAACT
GTTTCAACCAGCAATAAGCAGGCAGATATTTGAGTCTTTCCTGTCTGATT
ATAATATTTTTTTTTGACTATAAACGTCTAGGTAATGAAAATCTTGAAGT
TTTGGGCTTCATAATTCGCTAAAAAATACTTTGGTAAACTTCTAATTTTA
TAGTTCATGTCACAAGCGGGTTTTCTTCAAGCGCTGCAAGAATTCCCAAA
GGACACTATAAACGAGGAGATGGTGGAATTAATGGAGCCTTACTTCAAAG
CTAAACGAGTATTCATTTTGTTCTCTTAGGTTACGTAATTTCCGCCATTA
TGGAAGCACATATTCGAATCTGTAGAGACGATCACTTACGCATATCGAAC
GTTTGCTTCCATAATAATGGAAATTACGTAACTTGAAAAATCTTTGTAAG
ATTTCCCTTTCAATTCATGTTTCTCTTTCTATACACCCCTGGCTCACAGC
CCCGGTGAAACTCTTTTCCTCAGTGGGGATAAAAGTTTCTATTGAAATCC
AAATGGGGATAGAAATTCTATTGTTCCAACCCCAAAAAATCAAGTGGGGA
TTCCAGTTTTGGAGTGCAATTTTTGAACATAGGATCTCGAATGGGGATGA
AATCAAATTCAAATTCCCAGTGGGGCTGAAATTCCCGGGTATTTTCCCAT
CGGGGATGAAATTTTTGCCAAATTTTCCAGTGGGGCTGAGGTCCCAGCGG
GTCTATGACACAGGGGTGTTTCAATGAGAGGACTTGTGATGAGCATGAGA
TTACAACATGATGGATATGTTTTAAATATACTATGATCATTTAAGTTTTC
ATATCAGGTATACTAATTTACCTTTGTATTATAGGTTTGTGGTAACGTAG
CTGGGTTGTGTTCGTGGACGAAAGCAATGGCCAAATTTTTCTCCGTCAAC
AAAGAAGTCCTTCCTCTTAAAGTAAACTTCCCTTTATTCTGGATATCAAA
AATTTGTTATGTCGTGACCAACTCATGACTGATAACTGATCATCATAGAC
AACTGAGATTTTACACGTTTCTTTTATAAAAGCATCCAACATTTTTGAAG
CCTTCGGATGTTCTTAACATTTTGAGATTGACGCCTAAAAGTTTTCTTAA
CATGTTCTTATTTTCACCAAATCGGGAGTTTTTTGTCCATTTTCCTTATA
AATCGGGTGTTTTAGAGTCCACAAAGCCTTAGAATATTCTTAACTTGCTC
TGAACACTCTGGTCATCGAAGTCTTATGTTCTTATATAGTTTTTTTCTTA
TAATTTTCTACTTTTAGGCAAACCTTTCAATTCAAGAGGCAAAGTTAGAA
CTGGCGATGAGTGATTTGCAAACAGCTCAACAACAGTTGGACGAAAAACA
GAAAGAATTAGACGCCGCACAGGCAGAATATGAAAGTGCCATGCGCGAAA
AACAGGTAAGAAACCCAGGGTAGATTCTGTTGCGAATGTTTTTACTCTTA
AAACTGACTTTCTATGCATCAAGGTGTTTGAGTGTTATCAAGAAATATCA
CAAAATATTGACTACGAGTATACTCGTGGAAGAGGGCTCAAAATACAGAT
AGAACTTTGACGTGTTAAAGGTTTTATTTTTACATAAGAAAGCCTAAGCG
GCGTAAAGACCCATAGCAGTGTTAACATTTGCAATACAAATTTACAGGAG
TAAATTTTTTTGATGTATTGACTCGAGTCGCGCGAGTAATAAAAATTTAA
TTTAATTACTTTAATATTTTGAGAGAAAGAAAGATTTGACCATATAAGTT
GGAGGTATTGATTATGTGTGTTTTTTTCTTACGCATGTGCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013699XLOC_013699Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024412-exon-sc0000491-1575043694:92940..93028TCONS_00024412-exon-sc0000491-1575043694:92940..93028Clytia hemisphaericaexon
TCONS_00024412-exon-sc0000491-1575043694:91036..91561TCONS_00024412-exon-sc0000491-1575043694:91036..91561Clytia hemisphaericaexon
TCONS_00024412-exon-sc0000491-1510915933:92940..93028TCONS_00024412-exon-sc0000491-1510915933:92940..93028Clytia hemisphaericaexon
TCONS_00024412-exon-sc0000491-1510915933:91036..91561TCONS_00024412-exon-sc0000491-1510915933:91036..91561Clytia hemisphaericaexon
TCONS_00024412-exon-sc0000491-1491911889:92940..93028TCONS_00024412-exon-sc0000491-1491911889:92940..93028Clytia hemisphaericaexon
TCONS_00024412-exon-sc0000491-1491911889:91036..91561TCONS_00024412-exon-sc0000491-1491911889:91036..91561Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000491supercontigsc0000491:91036..93028 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0944232	0.127819	0.546087	0.622647	0.648129	0.27936	0.0561727	0.105176	0.273086	0.193489	0.386774	0.674083	0.222044	0.241417	0.159427	0.333348	0.138626	0.308937	0.58907	0.583221	0.820496	0.519961	0.121671	0.34617	0	0.083732	0.375696	0.212783	0.204017	0.463619
Blast
[Close]
BLAST of TCONS_00024412 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 5.171e-30
Identity = 57/76 (75.00%), Postives = 62/76 (81.58%), Query Frame = 3 
Query:    3 VCGNVAGLCSWTKAMAKFFSVNKEVLPLKANLSIQEAKLELAMSDLQTAQQQLDEKQKELDAAQAEYESAMREKQV 230
            VCGNVAGLCSWTKAMA FFS+NKEVLPLKANL +QE +  LAM DLQ AQ +LD+KQ ELD  QAEYE AM EKQ 
Sbjct: 3399 VCGNVAGLCSWTKAMASFFSINKEVLPLKANLVVQENRHLLAMQDLQKAQAELDDKQAELDVVQAEYEQAMTEKQT 3474
The following BLAST results are available for this feature:
BLAST of TCONS_00024412 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH55.171e-3075.00Dynein heavy chain 5, axonemal OS=Homo sapiens GN=... [more]
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