TCONS_00024394 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00024394
Unique Name	TCONS_00024394
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3899

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000491:239614..243604+

transcript sequence

>TCONS_00024394 ID=TCONS_00024394|Name=TCONS_00024394|organism=Clytia hemisphaerica|type=transcript|length=3899bp
AcgcaaacattttttttcaacttaGAACAAAGTATAAAGAACATAAAGGC
TCCAGAGGCTAAAAAGTTAGAAAATAGAGTGTTATTAGGCTTTGCAGCCA
AAAGATCCTGCCGAATGATCTTTGACTTAGATTCGGGTCTAATCTCACTT
GAGAATGTGTATGTCTTTtttgtcttgtcttgtcttgtcttgcagccaaa
aaaacataaaaaaggaagaaaatattaaaaatagtTCTTTATTACATTAC
ACATAAATTCTAAATATTTCCACTTTCTTATATTAAATAGCATTAAAATG
CTTATGACAAGTCACATGAGAGTGAACACTATTGAAGTGAAGTGAATAGA
AGTATTCATTGTCCAATTTTAAATTGCAGCCTTTATAAGACCTTTAACCT
CTTATCTAATTGATTTCAGACCTGGAGTTTATCtgcatttttgtttcttt
aaaatATGATATGTAGAGCTATTATCTTAGATGGATTATAACCCATTGAT
TAATGATTGTAGTTATCTGATAATGGGATCTTCATAATTAATAGGATTGC
TTTAAGTCAGGCTCTAATTGATTATGAATACAATACTATTCCATTCGTTg
tgtataaaaaaatttaatcaccAAAAACTACCACTGATGCACACAAAAGA
AAGGCATTTAATTTCAgcgaaatataagaaatatggGGGAAATAAATTCT
TAACAAATatgtaaaataataaatttcatTTAACAAAAACTGCCCTTAGG
ATCATGAGGATAAAATTTGAATCTGTGAAAGGGTTGATAACCATTTGTCT
CCATCATATCgaattcattataaaaaaagttgatttttatttaaactcag
tcattataaaaaaatgggtctttttcttttttagattcaCTTTACCGACA
TTTGACAGGGATTAAAAGCACTACCTATAGgtatttaaaatatattttag
ggGTTTAATGACTCCACGTTGATAAAATATGAAAGCAAAAGctttatttg
agaaaaatataaaaagtgatttataagaataatgCCCATACAAAACATAG
CTGTCAAACCACAATTTTAAAATTGTGAAAGCTgtttgattttatatttt
tcattttttgNTTTATAAGAATAATGCCCATACAAAACATAGCTGTCAAA
CCACAATTTTAAAATTGTGAAAGCTgtttgattttatatttttcattttt
tgcgtATCTAAAAACATATTATGCACAATGCAAACAGTTTCCAAAAACCA
TCACTAAAAGTTTCTAATCGATTGAAAAACTGtttgtaaatttttcattt
ttttcaaaagctcaATTTCTCAAATTACCTCGAGTCCCAAGTATATATGC
CAAACCANTTCAAAAGCTCAATTTCTCAAATTACCTCGAGTCCCAAGTAT
ATATGCCAAACCAGCTGCTTTTCTATGAACAGTGGGGTAGTGTTCTTAcc
cataacaatccaaaagttccctcaacaatcaaatcaacctgattggttga
aaataaaataatgatgTAATTGACCTAAATCAACCAATTTAGTGCTCAGG
AAAACTGTTAATTGTCCGAggaaacttttggattgttacgGGTAAGTACA
TTACACAAAGAAGAACTTGAACAAAGATTATCTAGTTTAACATTATGCTA
GCATTGGAGCAGAAAATCAGTAAAAAAATTATCTCAAATATATACCAAGT
GTGGAAAACCCTTTTTCTAGGctaaaaagtgaaacaaaagttaaaatgaa
aaataatttggatGAGcaggatttaaatttaaatttaaatttcttaatAA
TTATAGAAAAGTTATATATTACTgctaaacaaaacaaaacaaattttcag
tGTTTTAATAACCATACCAGTTCTTGCAAATTAAAATGGTGAAAGTAACC
TGACATTCTGGCAACTTAACGACATTTGGTCACAAATAGAAAATCAtaga
ttttttcaaatcatttaAGACACTGcgttaaagaaaaataaacatcAAAC
TATGTGATAATTTCAAAAAATAATTTCTTATAATAATAATAATCTTTATG
TACATATTTTTTATCCAATATATACACTATCAACAGTTAGGAAGGGGATT
TTTCACAGATTGGTCACAGAAGGTATACAAAATTAATGCAGAGAGTGTTT
CTTTATTTGTTTAATTCCTTTTTATTCCAAATTATTCCTTTTTATGGAAT
AATTGCTCTTGGTTTCTGGTTTGTTCACTAACTTGGAATCAATGGCTACT
TGAAAATAGCATCATTTAATTGGcaaaatggggggggggagtCTATTCGC
ACTTCCAAAATCATAAGAAGGAAAGaataaaataacagaaaaatttgtta
taaaataACTACAAAAAGATTATGTCATTTAGTATACACTTGTTTCTGGG
TTTCTGTGAACtaatatttacattttacaatTCAAAAAAAGNGTCATTTA
GTATACACTTGTTTCTGGGTTTCTGTGAACtaatatttacattttacaat
tcaaaaaaagtattcaaaaatcttttaatacGTTCTAAGCCATACAACCT
AATTTAAAACTTACTAAGAAAGCTTTTCTTTCTAAGCCTATTAATATTAT
ATACATATTATTTTAACTTGAAAAGGGTCTTTTAAGTTTCGTCTGTCAAA
AAGATGAGAAACACAAGATGTAATAAATCATAATCATATTTTTATGTAGG
TTGGATGGATTAAAAATGatccaccaaattaaaattGCGCGTTAAAATTA
CGTATTTAGAATATACAAACCGAGCTTTCAGTCAGTAAAAAGAAAACTTG
TGTTCAATGCAATCACATCAAAACCAGACTTTATACCTAAAAATAAGCAT
TCTCNTACAAACCGAGCTTTCAGTCAGTAAAAAGAAAACTTGTGTTCAAT
GCAATCACATCAAAACCAGACTTTATACCTAAAAATAAGCATTCtcggat
tcaaaatttaaattcaacCAACATCAATTACAAGTTTTTCCATCAACAAA
TGATTGATTCTACCACAAGAATCTTCAACCATTGATGACGGACGTTCATC
TGAACCCTTTCGACTCTTTCGATACTGCTTTCTTCGACGTCGCCTATTTT
CTTCCGAGACTGACCCAATTTTACCATGCATCATAGCAAATTCCTTGTGG
CGTTCTCCCAAACTGCTTATAGATTCACAACTTTTTGACGATTTAACAAA
ACTCTTTTTCACAGCAGcgttattattattttcatcttttttgtgAGCAA
GTTTACGAAAATCTCCCCCAGAATATGATAATGAAAGTTCTGAAAGCTCT
TCATCGTCATCACTCAAGTTGTTTGCCTTTCGTTCTTTACTTTTGCTCAG
ATCCCAACTTTTCTGCCTTGAAATGGTATGATTCTCTGTATGAGCCTCCC
CAGGTATTATTTGTCCAGATAAGTCATAATTGAAATAAGATTCTGTCTTT
CTTGGGACGGTATTACGTGTTGTATACATGGCTGCTAAACTTTTCTCGTC
ACAACTTATGCGCTTTTTAGCATTTTTCTTACGTCTTGGGCTGAGAGGCA
AAGAATTATTGTTCAATACAACAGGTTCAATGTTACTGGAACTAGCAGAT
CTTCCAAGTGTACGGCGAGGTGATCGTGGAGGTTTGAAAGTCGGTGAGTT
TGGGTTTGAATATTCCTCTTTCATTAACTCAAAATATTTGTCAATATTTA
TCTTATTTGTGACATCACAAGTAGCTTTAAAATTCCCAGAACCAGGGCCT
AAAGCACCCAGGGGACATGGAACACCAGCTCGAGTGTTTGATAGAGAGTT
TTGATACCTGGTACCATCAGTTTCATCAGTTTGATTATTTGAATGTTCCA
TGATTGATGATGGATACAACTGGAcagcaaaattcaaaacaaaattgNN

Run BLAST on NCBI

transcript from alignment at sc0000491:239614..243604+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00024394 ID=TCONS_00024394|Name=TCONS_00024394|organism=Clytia hemisphaerica|type=transcript|length=3991bp|location=Sequence derived from alignment at sc0000491:239614..243604+ (Clytia hemisphaerica)
AcgcaaacattttttttcaacttaGAACAAAGTATAAAGAACATAAAGGC
TCCAGAGGCTAAAAAGTTAGAAAATAGAGTGTTATTAGGCTTTGCAGCCA
AAAGATCCTGCCGAATGATCTTTGACTTAGATTCGGGTCTAATCTCACTT
GAGAATGTGTATGTCTTTtttgtcttgtcttgtcttgtcttgcagccaaa
aaaacataaaaaaggaagaaaatattaaaaatagtTCTTTATTACATTAC
ACATAAATTCTAAATATTTCCACTTTCTTATATTAAATAGCATTAAAATG
CTTATGACAAGTCACATGAGAGTGAACACTATTGAAGTGAAGTGAATAGA
AGTATTCATTGTCCAATTTTAAATTGCAGCCTTTATAAGACCTTTAACCT
CTTATCTAATTGATTTCAGACCTGGAGTTTATCtgcatttttgtttcttt
aaaatATGATATGTAGAGCTATTATCTTAGATGGATTATAACCCATTGAT
TAATGATTGTAGTTATCTGATAATGGGATCTTCATAATTAATAGGATTGC
TTTAAGTCAGGCTCTAATTGATTATGAATACAATACTATTCCATTCGTTg
tgtataaaaaaatttaatcaccAAAAACTACCACTGATGCACACAAAAGA
AAGGCATTTAATTTCAgcgaaatataagaaatatggGGGAAATAAATTCT
TAACAAATatgtaaaataataaatttcatTTAACAAAAACTGCCCTTAGG
ATCATGAGGATAAAATTTGAATCTGTGAAAGGGTTGATAACCATTTGTCT
CCATCATATCgaattcattataaaaaaagttgatttttatttaaactcag
tcattataaaaaaatgggtctttttcttttttagattcaCTTTACCGACA
TTTGACAGGGATTAAAAGCACTACCTATAGgtatttaaaatatattttag
ggGTTTAATGACTCCACGTTGATAAAATATGAAAGCAAAAGctttatttg
agaaaaatataaaaagtgatttataagaataatgCCCATACAAAACATAG
CTGTCAAACCACAATTTTAAAATTGTGAAAGCTgtttgattttatatttt
tcattttttgNTTTATAAGAATAATGCCCATACAAAACATAGCTGTCAAA
CCACAATTTTAAAATTGTGAAAGCTgtttgattttatatttttcattttt
tgcgtATCTAAAAACATATTATGCACAATGCAAACAGTTTCCAAAAACCA
TCACTAAAAGTTTCTAATCGATTGAAAAACTGtttgtaaatttttcattt
ttttcaaaagctcaATTTCTCAAATTACCTCGAGTCCCAAGTATATATGC
CAAACCANTTCAAAAGCTCAATTTCTCAAATTACCTCGAGTCCCAAGTAT
ATATGCCAAACCAGCTGCTTTTCTATGAACAGTGGGGTAGTGTTCTTAcc
cataacaatccaaaagttccctcaacaatcaaatcaacctgattggttga
aaataaaataatgatgTAATTGACCTAAATCAACCAATTTAGTGCTCAGG
AAAACTGTTAATTGTCCGAggaaacttttggattgttacgGGTAAGTACA
TTACACAAAGAAGAACTTGAACAAAGATTATCTAGTTTAACATTATGCTA
GCATTGGAGCAGAAAATCAGTAAAAAAATTATCTCAAATATATACCAAGT
GTGGAAAACCCTTTTTCTAGGctaaaaagtgaaacaaaagttaaaatgaa
aaataatttggatGAGcaggatttaaatttaaatttaaatttcttaatAA
TTATAGAAAAGTTATATATTACTgctaaacaaaacaaaacaaattttcag
tGTTTTAATAACCATACCAGTTCTTGCAAATTAAAATGGTGAAAGTAACC
TGACATTCTGGCAACTTAACGACATTTGGTCACAAATAGAAAATCAtaga
ttttttcaaatcatttaAGACACTGcgttaaagaaaaataaacatcAAAC
TATGTGATAATTTCAAAAAATAATTTCTTATAATAATAATAATCTTTATG
TACATATTTTTTATCCAATATATACACTATCAACAGTTAGGAAGGGGATT
TTTCACAGATTGGTCACAGAAGGTATACAAAATTAATGCAGAGAGTGTTT
CTTTATTTGTTTAATTCCTTTTTATTCCAAATTATTCCTTTTTATGGAAT
AATTGCTCTTGGTTTCTGGTTTGTTCACTAACTTGGAATCAATGGCTACT
TGAAAATAGCATCATTTAATTGGcaaaatggggggggggagtCTATTCGC
ACTTCCAAAATCATAAGAAGGAAAGaataaaataacagaaaaatttgtta
taaaataACTACAAAAAGATTATGTCATTTAGTATACACTTGTTTCTGGG
TTTCTGTGAACtaatatttacattttacaatTCAAAAAAAGNGTCATTTA
GTATACACTTGTTTCTGGGTTTCTGTGAACtaatatttacattttacaat
tcaaaaaaagtattcaaaaatcttttaatacGTTCTAAGCCATACAACCT
AATTTAAAACTTACTAAGAAAGCTTTTCTTTCTAAGCCTATTAATATTAT
ATACATATTATTTTAACTTGAAAAGGGTCTTTTAAGTTTCGTCTGTCAAA
AAGATGAGAAACACAAGATGTAATAAATCATAATCATATTTTTATGTAGG
TTGGATGGATTAAAAATGatccaccaaattaaaattGCGCGTTAAAATTA
CGTATTTAGAATATACAAACCGAGCTTTCAGTCAGTAAAAAGAAAACTTG
TGTTCAATGCAATCACATCAAAACCAGACTTTATACCTAAAAATAAGCAT
TCTCNTACAAACCGAGCTTTCAGTCAGTAAAAAGAAAACTTGTGTTCAAT
GCAATCACATCAAAACCAGACTTTATACCTAAAAATAAGCATTCtcggat
tcaaaatttaaattcaacCAACATCAATTACAAGTTTTTCCATCAACAAA
TGATTGATTCTACCACAAGAATCTTCAACCATTGATGACGGACGTTCATC
TGAACCCTTTCGACTCTTTCGATACTGCTTTCTTCGACGTCGCCTATTTT
CTTCCGAGACTGACCCAATTTTACCATGCATCATAGCAAATTCCTTGTGG
CGTTCTCCCAAACTGCTTATAGATTCACAACTTTTTGACGATTTAACAAA
ACTCTTTTTCACAGCAGcgttattattattttcatcttttttgtgAGCAA
GTTTACGAAAATCTCCCCCAGAATATGATAATGAAAGTTCTGAAAGCTCT
TCATCGTCATCACTCAAGTTGTTTGCCTTTCGTTCTTTACTTTTGCTCAG
ATCCCAACTTTTCTGCCTTGAAATGGTATGATTCTCTGTATGAGCCTCCC
CAGGTATTATTTGTCCAGATAAGTCATAATTGAAATAAGATTCTGTCTTT
CTTGGGACGGTATTACGTGTTGTATACATGGCTGCTAAACTTTTCTCGTC
ACAACTTATGCGCTTTTTAGCATTTTTCTTACGTCTTGGGCTGAGAGGCA
AAGAATTATTGTTCAATACAACAGGTTCAATGTTACTGGAACTAGCAGAT
CTTCCNTTTTAGCATTTTTCTTACGTCTTGGGCTGAGAGGCAAAGAATTA
TTGTTCAATACAACAGGTTCAATGTTACTGGAACTAGCAGATCTTCCAAG
TGTACGGCGAGGTGATCGTGGAGGTTTGAAAGTCGGTGAGTTTGGGTTTG
AATATTCCTCTTTCATTAACTCAAAATATTTGTCAATATTTATCTTATTT
GTGACATCACAAGTAGCTTTAAAATTCCCAGAACCAGGGCCTAAAGCACC
CAGGGGACATGGAACACCAGCTCGAGTGTTTGATAGAGAGTTTTGATACC
TGGTACCATCAGTTTCATCAGTTTGATTATTTGAATGTTCCATGATTGAT
GATGGATACAACTGGAcagcaaaattcaaaacaaaattgNN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013693	XLOC_013693	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00024394-exon-sc0000491-1491911889:239614..243160	TCONS_00024394-exon-sc0000491-1491911889:239614..243160	Clytia hemisphaerica	exon
TCONS_00024394-exon-sc0000491-1510915933:239614..243160	TCONS_00024394-exon-sc0000491-1510915933:239614..243160	Clytia hemisphaerica	exon
TCONS_00024394-exon-sc0000491-1575043694:239614..243160	TCONS_00024394-exon-sc0000491-1575043694:239614..243160	Clytia hemisphaerica	exon
TCONS_00024394-exon-sc0000491-1491911889:243253..243604	TCONS_00024394-exon-sc0000491-1491911889:243253..243604	Clytia hemisphaerica	exon
TCONS_00024394-exon-sc0000491-1510915933:243253..243604	TCONS_00024394-exon-sc0000491-1510915933:243253..243604	Clytia hemisphaerica	exon
TCONS_00024394-exon-sc0000491-1575043694:243253..243604	TCONS_00024394-exon-sc0000491-1575043694:243253..243604	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000491	supercontig	sc0000491:239614..243604 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.19186	4.9035	2.43849	2.53478	7.54608	5.69663	5.649	5.50839	4.29406	8.46005	7.95827	7.85038	16.2225	12.4378	6.56774	6.84313	4.56153	4.65323	17.5895	13.1335	13.3675	17.1257	5.52296	6.75503	10.3743	9.15752	5.9853	8.44186	6.82971	5.80591

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00024394 vs. Swiss-Prot (Human)

BLAST of TCONS_00024394 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00024394 (transcript) - C. hemisphaerica