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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024390 ID=TCONS_00024390|Name=TCONS_00024390|organism=Clytia hemisphaerica|type=transcript|length=768bp
CTGTGCAGTGTCAACAAGTTAGGTACTTACAGCCAAGGACTGTTGATCAT
ATCTGGGACCTGTATAGCTGTTGTGTCCGTAATCTATTATCGACGGTTGA
AACAATTCCACAAATATCATTGGTTGGTGCGAAAGGATGAACCAAGTTAC
ACATATTATATCATTATATGTTGGTTGTCACCTATAATAGTTGTCGGTAC
TATCCTACTATCATCCACACTGACTTTATTGATCACTCTATTACTTATTA
TAATGTACTACATTATATTTGTTATAACGTATAACATGGTTGTTAAAGAA
CTATTATCCCATTACAAGCGTGCAAAAGTGTTAGACATGGCGAAAATAGA
TCGTATTATATAGTatcaacaaaattcaaaaaagcttCAGAATTGATTGG
TTTGTTGATGGTGACGACTTTTGTATTATCTTTACCGTTATGTCTATCCA
TAACATCAAAtcttttgatggatttaagTGGAGAAACTATCAAACAAAAA
CATACAAGTGTAATGTCGGCTATTGCTCAATTATGTTATGTTATAAATTC
AGCATTATCTCCTATAATATGTTTAAAGAAACATTTGGATATCAAGAGAG
CAAgtaaaaagacactgaaatTCAGTATATTTCAACAAACTAATAGAGTT
CGACCGATTGTTTATTTAGCGAGGACTAATGGACATGTTTAATCGAAATT
GGGATGAGTGTTATTCACCTAGGGGGGAGGGATGgtttattaaaaagtga
aaaaggtgACCCgtaatg Run BLAST on NCBI protein sequence of TCONS_00024390-protein >TCONS_00024390-protein ID=TCONS_00024390-protein|Name=TCONS_00024390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
LCSVNKLGTYSQGLLIISGTCIAVVSVIYYRRLKQFHKYHWLVRKDEPSY
TYYIIICWLSPIIVVGTILLSSTLTLLITLLLIIMYYIIFVITYNMVVKE
LLSHYKRAKVLDMAKIDRII Run BLAST on NCBI transcript from alignment at sc0000491:197132..198675+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024390 ID=TCONS_00024390|Name=TCONS_00024390|organism=Clytia hemisphaerica|type=transcript|length=1544bp|location=Sequence derived from alignment at sc0000491:197132..198675+ (Clytia hemisphaerica)
CTGTGCAGTGTCAACAAGTTAGGTAAGCGTTTgaaatacacgttttattt
ataagaacatccaacatttttgaagccttcggatgttcttaaccttttga
aattttaccatttcTTAATATatcgggtgttttagattcggcaaaacctt
aaaatgttcttaacttgttcttaatacttTTGCCCTCAAGCTTGCTATAA
TTTCTTATGAAAAGGTGTATCTTTAACTAGTTTTTTCCTCTACTCTAGAC
AACCAACCAACTGAAATCGGGTGTTCTAGGTGTTCTAGAGTATGCCAAGC
CTCAAAACGTTCTTAAATTCTTCTTAATACTTTTgacaatcgaagcctta
tggtTTTATATAGCTTGTTATAGTTCATTCTATAAATTCTTTGAGTGTAA
CTACCGCCTCGTCTGAAGCCATTACCAAAAAGTTGATTAAATCTCTTGCG
TCTAGAGTGGACTCTCTATGAACTCCTTTGGGAATCAATCACTATGgcat
tattttgaaaacgaggcaagaGGGTACGTAATTTGTGAAAAAGtctattt
ccttaaaaaaaacgtagacgaaattttggaatttccatGGGGTGGTTGGT
CCCCTGGGTCTGTAACACAGGGGTGTATCATGATTGAGGCTAGGCCAAAC
TCGTTTcttgcgtattatcagctttttgattcttactgatagcgctagat
aatgccgtcaatcagtaacgtaaataaagcctggaatacacagGGACGAG
GTTGACGCTAGGCTATCTTTAGCTAGGTAGTTTCCTTTTCTGTTTTAGGT
ACTTACAGCCAAGGACTGTTGATCATATCTGGGACCTGTATAGCTGTTGT
GTCCGTAATCTATTATCGACGGTTGAAACAATTCCACAAATATCATTGGT
TGGTGCGAAAGGATGAACCAAGTTACACATATTATATCATTATATGTTGG
TTGTCACCTATAATAGTTGTCGGTACTATCCTACTATCATCCACACTGAC
TTTATTGATCACTCTATTACTTATTATAATGTACTACATTATATTTGTTA
TAACGTATAACATGGTTGTTAAAGAACTATTATCCCATTACAAGCGTGCA
AAAGTGTTAGACATGGCGAAAATAGATCGTATTATATAGTatcaacaaaa
ttcaaaaaagcttCAGAATTGATTGGTTTGTTGATGGTGACGACTTTTGT
ATTATCTTTACCGTTATGTCTATCCATAACATCAAAtcttttgatggatt
taagTGGAGAAACTATCAAACAAAAACATACAAGTGTAATGTCGGCTATT
GCTCAATTATGTTATGTTATAAATTCAGCATTATCTCCTATAATATGTTT
AAAGAAACATTTGGATATCAAGAGAGCAAgtaaaaagacactgaaatTCA
GTATATTTCAACAAACTAATAGAGTTCGACCGATTGTTTATTTAGCGAGG
ACTAATGGACATGTTTAATCGAAATTGGGATGAGTGTTATTCACCTAGGG
GGGAGGGATGgtttattaaaaagtgaaaaaggtgACCCgtaatg Coding sequence (CDS) from alignment at sc0000491:197132..198675+ >TCONS_00024390 ID=TCONS_00024390|Name=TCONS_00024390|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at sc0000491:197132..198675+ (Clytia hemisphaerica)
CTGTGCAGTGTCAACAAGTTAGGTACTTACAGCCAAGGACTGTTGATCAT
ATCTGGGACCTGTATAGCTGTTGTGTCCGTAATCTATTATCGACGGTTGA
AACAATTCCACAAATATCATTGGTTGGTGCGAAAGGATGAACCAAGTTAC
ACATATTATATCATTATATGTTGGTTGTCACCTATAATAGTTGTCGGTAC
TATCCTACTATCATCCACACTGACTTTATTGATCACTCTATTACTTATTA
TAATGTACTACATTATATTTGTTATAACGTATAACATGGTTGTTAAAGAA
CTATTATCCCATTACAAGCGTGCAAAAGTGTTAGACATGGCGAAAATAGA
TCGTATTATATAGCTGTGCAGTGTCAACAAGTTAGGTACTTACAGCCAAG
GACTGTTGATCATATCTGGGACCTGTATAGCTGTTGTGTCCGTAATCTAT
TATCGACGGTTGAAACAATTCCACAAATATCATTGGTTGGTGCGAAAGGA
TGAACCAAGTTACACATATTATATCATTATATGTTGGTTGTCACCTATAA
TAGTTGTCGGTACTATCCTACTATCATCCACACTGACTTTATTGATCACT
CTATTACTTATTATAATGTACTACATTATATTTGTTATAACGTATAACAT
GGTTGTTAAAGAACTATTATCCCATTACAAGCGTGCAAAAGTGTTAGACA
TGGCGAAAATAGATCGTATTATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024390-exon-sc0000491-1491911889:197132..197153 | TCONS_00024390-exon-sc0000491-1491911889:197132..197153 | Clytia hemisphaerica | exon |
| TCONS_00024390-exon-sc0000491-1510915933:197132..197153 | TCONS_00024390-exon-sc0000491-1510915933:197132..197153 | Clytia hemisphaerica | exon |
| TCONS_00024390-exon-sc0000491-1575043694:197132..197153 | TCONS_00024390-exon-sc0000491-1575043694:197132..197153 | Clytia hemisphaerica | exon |
| TCONS_00024390-exon-sc0000491-1491911889:197930..198675 | TCONS_00024390-exon-sc0000491-1491911889:197930..198675 | Clytia hemisphaerica | exon |
| TCONS_00024390-exon-sc0000491-1510915933:197930..198675 | TCONS_00024390-exon-sc0000491-1510915933:197930..198675 | Clytia hemisphaerica | exon |
| TCONS_00024390-exon-sc0000491-1575043694:197930..198675 | TCONS_00024390-exon-sc0000491-1575043694:197930..198675 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000491 | supercontig | sc0000491:197132..198675 + |
Blast
The following BLAST results are available for this feature:
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