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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024389 ID=TCONS_00024389|Name=TCONS_00024389|organism=Clytia hemisphaerica|type=transcript|length=1263bp
TGCGGTTCTATTATTTAAAAGGGACACAGACAGACAAAGAAAAGCTAAAT
CTAAAAGCACCATAATTTAATAAATTAGACAAAAGGAATATCCTCATTCA
TAAAACCTATAAATAGTTGAAACCAGGGAGGTTAAATTTAATGGAAATCA
ATAATCCACAATAAGATGCGATTGAAGGTTCTTTTTATACTCCTTTTAAC
TGTGTGCCTTGTGAAATCTTGGCGACGCAGACGCCGAAGATGTAGTCCGG
TCAACTGTGTTCGTCAATGGAATGCTTGGACACCTTGTACGTGCCTTGGT
GATTCTTCGCGTACCAGTCGTGTAACAAGAGGGGCCAGTTGTGGGGGTTC
TTGTGCTAATTGGCCACAACAAAAGAGAAAGTGTCGCACGAATGAAAATt
gGAGATGCATGTTTCCATATGGTTATTGCAACCCTCACTCTACATCCAAA
TGTACTTGTCTTCCTGGTCGCATGgGGAAAACCTGCGGACAAAAATGTCC
ACACAATAAGTTTGGAAACGGGTGCAGACAAACCTGTAATTGCGGAGGAG
CTCAATGCGACCCGCAAACTGGTAAATGTAGATGTAACCCTGGTAAGTTC
GGTAAACACTGCCATCATGCATACGCAATACTCCGTGGAATCCAATACAT
TCGATTGAAAGGTACAACGCCCTGTCATGCTCAAATCAAAGTCACCTCTA
CTGCTCAAAAAGCCCGAAATGTTTGTCCAAGACCGTCACATTATGCTTAC
AGATGTCAATGTGGATTCGGGTCAAGTGCGTATAATTTGTTTTATGGGCA
GACGTGTCAATGTGCACAACGGGTACCGAATTCTGGCCGGTATAGATCGT
CCTGGAGAAACAGATATGTCACCATCAGTTACTGCTGTCCTCGATAGAGA
GGTCAAATGAACAGAAGACACCATTTTGACCATGTGTAGAGTTAAACATT
CCCTAACATTCCTCTGCCAAAAAAAAGTCGTCAACAAGTATTTTGTTGTA
CCAATAAGGTATTAAACTAACACAACCTTCTAAAAAAGAGAATCTATCCG
AAACGTGACTAGTTTAAGGACGTTctaccatggaggtataaagaaagaca
ggagaagtatgctattgtaaccaagctcgccctacgattaaaaaagttac
gatgtatgcatgctcataatctcatatatcgtgcatttttaatgagctct
tttatccataggttaaatcttattggctcatttaagctttagaaattaga
tgagacgagattc Run BLAST on NCBI protein sequence of TCONS_00024389-protein >TCONS_00024389-protein ID=TCONS_00024389-protein|Name=TCONS_00024389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
MRLKVLFILLLTVCLVKSWRRRRRRCSPVNCVRQWNAWTPCTCLGDSSRT
SRVTRGASCGGSCANWPQQKRKCRTNENWRCMFPYGYCNPHSTSKCTCLP
GRMGKTCGQKCPHNKFGNGCRQTCNCGGAQCDPQTGKCRCNPGKFGKHCH
HAYAILRGIQYIRLKGTTPCHAQIKVTSTAQKARNVCPRPSHYAYRCQCG
FGSSAYNLFYGQTCQCAQRVPNSGRYRSSWRNRYVTISYCCPR Run BLAST on NCBI transcript from alignment at sc0000491:186814..191201+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024389 ID=TCONS_00024389|Name=TCONS_00024389|organism=Clytia hemisphaerica|type=transcript|length=4388bp|location=Sequence derived from alignment at sc0000491:186814..191201+ (Clytia hemisphaerica)
TGCGGTTCTATTATTTAAAAGGGACACAGACAGACAAAGAAAAGCTAAAT
CTAAAAGCACCATAATTTAATAAATTAGACAAAAGGAATATCCTCATTCA
TAAAACCTATAAATAGTTGAAACCAGGGAGGTTAAATTTAATGGAAATCA
ATAATCCACAATAAGATGCGATTGAAGGTTCTTTTTATACTCCTTTTAAC
TGTGTGCCTTGTGAAATCTTGGCGACGCAGACGCCGAAGATGTAGTCCGG
TCAACTGTGTTCGTCAATGGAATGCTTGGACACCTTGTACGTGCCTTGGT
GATTCTTCGCGTACCAGTCGTGTAACAAGAGGGGCCAGTTGTGGGGGTTC
TTGTGCTAATTGGCCACAACAAAAGAGAAAGTGTCGCACGAATGAAAATt
ggtaaatatatttatttattaagaTATTTAGAACGATTTTATGTGAGCAT
GAGACTAAGTTATGGCTAAAGTCCATTCTATTGTGCACTTAAGTTCTTTT
GTNGTGAGCATGAGACTAAATTATGGCTGAAGTCAATTCGTTTGCGCATT
AACGTTCTTTTGCTTGTTAtctagactatgttatagtttaagtcaaatca
ctatctaagaaaatttgcaaacgggcttttttgccgaaaagagtttacag
ccggtTGAGTAAATGCCAGTTAAGTGAATTTTCGCCATGTTAAGTTGTGa
atgtaaaatatatttgaaaaattgaataaaaagcttttcggcttacgcca
tcatcagttatcatgccagttgttttttcgaaattctcccgccgattttt
tttcccgtaaaccgccataacgccatactgccatattttcccgcctttaa
tATCACTGTAATGGACAATAACATCATCTACTTGTTATCGTGCAACCTAT
TCTTCAAATATATTAAATgatataccgttgaaaagatagtTCAGAGCACC
GACACCGATAttgtttcatgtttttttttcttcaaaattctaATATGAAA
TAAGAAGATAAGAGGAATTTCTGAGAAATAGCCCTTGATTTATCACCGTT
TCTTCGACGTTTTGCATCAAAATTACCGTATCACCGATTGAAAATTCAAC
ATTTTCCGTCATCGAAATATCGAAACGCCGACACACTGGCGTACCAGTAT
TGTTTACTCTTATTTGAAGAGTTGGTTGGAAACAAAACAAgtttagtgca
cacttaaagcgaatggactttaaATCCTGAATTCGTATTAAGTACAAAGT
gtgagttttttgtttttctaatcGAGGAGAATGAACATTATTAAAAAGTA
TTTAATCTTAACGTGCCACTTTTTGGTTCTACTGATAAACTTGAGAGCTA
TCATGATCATAAAAACActctcttctcacagacccggtaagatTTCTTtg
gccagtgggggtaaaaataacggactgaaaatCGATTGGGATTgttattc
ccatattttttatggctggggatttcaattcttttgtcagaaaattcaat
ggggTTGAAAAAAAGTAGGATATTATTTGGTAGCGAAGGTTTGGTctatt
tgatcattttcagtgggaacaaaaattagagatattttatggggatgata
ttttggtcaaaatctTTCGAGTGGTTTGGGGTCCTAGTCGTTCTGTGAGT
TCGTTTGAATGAAGCCATTGGCTCCGTTCTCTCTTTTTGCTATTGTTAGA
TTCATTCTTGTGTGACCATCTTTACTTTTCACGATATTACAGGAGATGCA
TGTTTCCATATGGTTATTGCAACCCTCACTCTACATCCAAATGTACTTGT
CTTCCTGGTCGCATGGTAAGTCAATAATgattctacaatcatggtcgaaa
actattgagaattaagcttatttcctcgtttttcgaaatttggagttcgg
gcgagaaagtcgattttgggccatctctccAATTTAATCGGATCTTTcag
tttatagacttccaggctatattatgagccttattggaccatttttgaac
atttggatcctcagattctaaggtTCTTAATTATAAGTCTCGTGTTAaag
catagaggtataaagaaaaacaggagttgaatgtgtcggtaattggtcgt
taaagtcttttgatttcttttataaaatgtatcaaaagaaattctaagct
cgcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCAAtctgtagacata
aagtcgctggagaattttggaggaaagtatcaagcaatagagttcacctt
aaggaaaacattgatcgaaaaatcttatcatttgatggaggattgccaag
tttacaggcctttttttagtccaaatattttcttacactgatgtcagaaa
cgatgaatctcgtctcatctaatttctaaagcttaaatgagccaatagga
tttcacctatggataaaagagctcattaaaaatgcacgatatatgaNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNgatatatgagattatgagcatgcatacatcgtaacttttttaatcgta
gggcgagcttggttacaatagcatacttctcctgtttctttatacctcca
tggttaaagctcagagttaaaactctacccttccaacctactttagagca
cttacaaatcgattgtggtttcaaatcttcccggtggatttccctttttt
ctcaaatattacgaccatgattatAGTCTGAAGACCTCTATCCCCATCCT
CTAGTCCTTATCCTATTAACCTATTTAGTATGGTTCgtgccattgagttt
caagcctataAGGCTAGAGGCGAAACGTTAATCCCTCTCAGGCAAAAGAA
ATTGCCAGccaattttctttggaaaaaatGTATGCATGAGAAAATAGTGT
AAAATAGTTTtaagttttaacatttaaatgctttctttttaatGTATCCA
GTTATTTTCTGGCTCTTGAATCAAACAttgctttttatttttcttgtagg
GGAAAACCTGCGGACAAAAATGTCCACACAATAAGTTTGGAAACGGGTGC
AGACAAACCTGTAATTGCGGAGGAGCTCAATGCGACCCGCAAACTGGTAA
ATGTAGATGTAACCCTGGTAAGTTCGGTAAACACTGCCATCATGCATACG
CAATACTCCGTGGAATCCAATACATTCGATTGAAAGGTACAACGCCCTGT
CATGCTCAAATCAAAGTCACCTCTACTGCTCAAAAAGCCCGAAATGTTTG
TCCAAGACCGTCACATTATGCTTACAGATGTCAATGTGGATTCGGGTCAA
GTGCGTATAATTTGTTTTATGGGCAGACGTGTCAATGTGCACAACGGGTA
CCGAATTCTGGCCGGTATAGATCGTCCTGGAGAAACAGATATGTCACCAT
CAGTTACTGCTGTCCTCGATAGAGAGGTCAAATGAACAGAAGACACCATT
TTGACCATGTGTAGAGTTAAACATTCCCTAACATTCCTCTGCCAAAAAAA
AGTCGTCAACAAGTATTTTGTTGTACCAATAAGGTATTAAACTAACACAA
CCTTCTAAAAAAGAGAATCTATCCGAAACGTGACTAGTTTAAGGACGTTc
taccatggaggtataaagaaagacaggagaagtatgctattgtaaccaag
ctcgccctacgattaaaaaagttacgatgtatgcatgctcataatctcat
atatcgtgcatttttaatgagctcttttatccataggttaaatcttattg
gctcatttaagctttagaaattagatgagacgagattc Coding sequence (CDS) from alignment at sc0000491:186814..191201+ >TCONS_00024389 ID=TCONS_00024389|Name=TCONS_00024389|organism=Clytia hemisphaerica|type=CDS|length=2196bp|location=Sequence derived from alignment at sc0000491:186814..191201+ (Clytia hemisphaerica)
ATGCGATTGAAGGTTCTTTTTATACTCCTTTTAACTGTGTGCCTTGTGAA
ATCTTGGCGACGCAGACGCCGAAGATGTAGTCCGGTCAACTGTGTTCGTC
AATGGAATGCTTGGACACCTTGTACGTGCCTTGGTGATTCTTCGCGTACC
AGTCGTGTAACAAGAGGGGCCAGTTGTGGGGGTTCTTGTGCTAATTGGCC
ACAACAAAAGAGAAAGTGTCGCACGAATGAAAATtgGAGATGCATGTTTC
CATATGGTTATTGCAACCCTCACTCTACATCCAAATGTACTTGTCTTCCT
GGTCGCATGgGGAAAACCTGCGGACAAAAATGTCCACACAATAAGTTTGG
AAACGGGTGCAGACAAACCTGTAATTGCGGAGGAGCTCAATGCGACCCGC
AAACTGGTAAATGTAGATGTAACCCTGGTAAGTTCGGTAAACACTGCCAT
CATGCATACGCAATACTCCGTGGAATCCAATACATTCGATTGAAAGGTAC
AACGCCCTGTCATGCTCAAATCAAAGTCACCTCTACTGCTCAAAAAGCCC
GAAATGTTTGTCCAAGACCGTCACATTATGCTTACAGATGTCAATGTGGA
TTCGGGTCAAGTGCGTATAATTTGTTTTATGGGCAGACGTGTCAATGTGC
ACAACGGGTACCGAATTCTGGCCGGTATAGATCGTCCTGGAGAAACAGAT
ATGTCACCATCAGTTACTGCTGTCCTCGATAGATGCGATTGAAGGTTCTT
TTTATACTCCTTTTAACTGTGTGCCTTGTGAAATCTTGGCGACGCAGACG
CCGAAGATGTAGTCCGGTCAACTGTGTTCGTCAATGGAATGCTTGGACAC
CTTGTACGTGCCTTGGTGATTCTTCGCGTACCAGTCGTGTAACAAGAGGG
GCCAGTTGTGGGGGTTCTTGTGCTAATTGGCCACAACAAAAGAGAAAGTG
TCGCACGAATGAAAATtgGAGATGCATGTTTCCATATGGTTATTGCAACC
CTCACTCTACATCCAAATGTACTTGTCTTCCTGGTCGCATGgGGAAAACC
TGCGGACAAAAATGTCCACACAATAAGTTTGGAAACGGGTGCAGACAAAC
CTGTAATTGCGGAGGAGCTCAATGCGACCCGCAAACTGGTAAATGTAGAT
GTAACCCTGGTAAGTTCGGTAAACACTGCCATCATGCATACGCAATACTC
CGTGGAATCCAATACATTCGATTGAAAGGTACAACGCCCTGTCATGCTCA
AATCAAAGTCACCTCTACTGCTCAAAAAGCCCGAAATGTTTGTCCAAGAC
CGTCACATTATGCTTACAGATGTCAATGTGGATTCGGGTCAAGTGCGTAT
AATTTGTTTTATGGGCAGACGTGTCAATGTGCACAACGGGTACCGAATTC
TGGCCGGTATAGATCGTCCTGGAGAAACAGATATGTCACCATCAGTTACT
GCTGTCCTCGATAGATGCGATTGAAGGTTCTTTTTATACTCCTTTTAACT
GTGTGCCTTGTGAAATCTTGGCGACGCAGACGCCGAAGATGTAGTCCGGT
CAACTGTGTTCGTCAATGGAATGCTTGGACACCTTGTACGTGCCTTGGTG
ATTCTTCGCGTACCAGTCGTGTAACAAGAGGGGCCAGTTGTGGGGGTTCT
TGTGCTAATTGGCCACAACAAAAGAGAAAGTGTCGCACGAATGAAAATtg
GAGATGCATGTTTCCATATGGTTATTGCAACCCTCACTCTACATCCAAAT
GTACTTGTCTTCCTGGTCGCATGgGGAAAACCTGCGGACAAAAATGTCCA
CACAATAAGTTTGGAAACGGGTGCAGACAAACCTGTAATTGCGGAGGAGC
TCAATGCGACCCGCAAACTGGTAAATGTAGATGTAACCCTGGTAAGTTCG
GTAAACACTGCCATCATGCATACGCAATACTCCGTGGAATCCAATACATT
CGATTGAAAGGTACAACGCCCTGTCATGCTCAAATCAAAGTCACCTCTAC
TGCTCAAAAAGCCCGAAATGTTTGTCCAAGACCGTCACATTATGCTTACA
GATGTCAATGTGGATTCGGGTCAAGTGCGTATAATTTGTTTTATGGGCAG
ACGTGTCAATGTGCACAACGGGTACCGAATTCTGGCCGGTATAGATCGTC
CTGGAGAAACAGATATGTCACCATCAGTTACTGCTGTCCTCGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024389-exon-sc0000491-1491911889:186814..187214 | TCONS_00024389-exon-sc0000491-1491911889:186814..187214 | Clytia hemisphaerica | exon |
| TCONS_00024389-exon-sc0000491-1510915933:186814..187214 | TCONS_00024389-exon-sc0000491-1510915933:186814..187214 | Clytia hemisphaerica | exon |
| TCONS_00024389-exon-sc0000491-1575043694:186814..187214 | TCONS_00024389-exon-sc0000491-1575043694:186814..187214 | Clytia hemisphaerica | exon |
| TCONS_00024389-exon-sc0000491-1491911889:188556..188628 | TCONS_00024389-exon-sc0000491-1491911889:188556..188628 | Clytia hemisphaerica | exon |
| TCONS_00024389-exon-sc0000491-1510915933:188556..188628 | TCONS_00024389-exon-sc0000491-1510915933:188556..188628 | Clytia hemisphaerica | exon |
| TCONS_00024389-exon-sc0000491-1575043694:188556..188628 | TCONS_00024389-exon-sc0000491-1575043694:188556..188628 | Clytia hemisphaerica | exon |
| TCONS_00024389-exon-sc0000491-1491911889:190413..191201 | TCONS_00024389-exon-sc0000491-1491911889:190413..191201 | Clytia hemisphaerica | exon |
| TCONS_00024389-exon-sc0000491-1510915933:190413..191201 | TCONS_00024389-exon-sc0000491-1510915933:190413..191201 | Clytia hemisphaerica | exon |
| TCONS_00024389-exon-sc0000491-1575043694:190413..191201 | TCONS_00024389-exon-sc0000491-1575043694:190413..191201 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000491 | supercontig | sc0000491:186814..191201 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013032 | EGF-like_CS |
Blast
The following BLAST results are available for this feature:
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