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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024371 ID=TCONS_00024371|Name=TCONS_00024371|organism=Clytia hemisphaerica|type=transcript|length=3377bpRun BLAST on NCBI protein sequence of TCONS_00024371-protein >TCONS_00024371-protein ID=TCONS_00024371-protein|Name=TCONS_00024371-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1125bp DRLWCECYQRGRKSCKTNNMPWADGTTCGKNKWCIQGHCRHREKLKPVHGRun BLAST on NCBI transcript from alignment at sc0000489:186484..199599- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024371 ID=TCONS_00024371|Name=TCONS_00024371|organism=Clytia hemisphaerica|type=transcript|length=13116bp|location=Sequence derived from alignment at sc0000489:186484..199599- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000489:186484..199599- >TCONS_00024371 ID=TCONS_00024371|Name=TCONS_00024371|organism=Clytia hemisphaerica|type=CDS|length=57375bp|location=Sequence derived from alignment at sc0000489:186484..199599- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024371 vs. Swiss-Prot (Human)
Match: ATS9 (A disintegrin and metalloproteinase with thrombospondin motifs 9 OS=Homo sapiens GN=ADAMTS9 PE=1 SV=4) HSP 1 Score: 662.914 bits (1709), Expect = 0.000e+0 Identity = 404/1165 (34.68%), Postives = 577/1165 (49.53%), Query Frame = 1
Query: 4 RLWCECYQRGRKSCKTNNMPWADGTTCGKNKWCIQGHCRHREKLKPV-HGNWGAWGAYNQCSRPCGGGIKYATRECDNPKPSYNGDYCIGQRRKYKSCNTQTCKNQTVDFREEQCAAFNGKDLYIHDFPKNPEWIPKHSGLNIEDSCKLFCEIKGSGIFYQLKSKVIDGTKCRKGSNDKCVDGKCRPAGCDNVLDSNAKVDKCGVCKGDNSACRIFTGTKEETIMGYNSVVRVPRGASRLKVVQVSSNSGDYDTNFLALLDHKERYIFNGDWRISLGRRRYWTYGTGIYYSGPNSENETIWMPGPLNSPVAVKILSIAATNNVKIRYSYTFXXXXXXXXXXXXXXXRWSECFPACNGHQIRDFVCKRSLDGQIVASSKCSR-PKPVARHRTCNFDCELMWRT-QKGQCIPLKTCGNGIQKQTSMCTKVYVPTSNKKDEALSSIECRKAKIGQRPPTEIPCFVKCTSMRWVYTPWSRCDVMCGGGHQMRIAKCVDQTTNTTTADFNCNSTDKASLTRMCNTHHCPKWHAGAWSESCSVTCGKGVIQRQVFCMIDDRTVLDNKCNQVRRPSKTKPCKARPCASWATKKWSTCSRSCGTGTQTRKVFCQT-TTGQIVDEERCEAVERPSDRRRCFEKACKLKVKLTQESVGESAKFLNVKWLSGAWGKCSRTCGHGYRERITACVSNNAIVTD-SYCDPSKKPVSRELCNTFPCPFWRHGAWSKCTLPCGNGTQTRLVLC-GFNGAIVSNMQCDPSQKPSDRRRCNQHRCPE-----AMAHDP-------PPVARATASH------WRVTMWSECSTTCGVGHQTRSVECSNH-----EECEQSRKPISIMECNKGACPGWNYGQWTPCRTERGCGKGLQLRLVVCQLEDGRVLPNKGCDAQHKPLTNRTCELLPCQQQYKWHTTGWEECNVQCSHGFQYRHVTCHDEDGHDSSETNCLKYDPKPDLQKACERPACPLWKTEDWGECDVTC---IQQRNVYC-ARDHELVDPSTCRLQTKPIEQQECHHENCVRIPVYSWKVGKWGNCGASCGYSLKARGVDCIDEAGRPVNDTLCK-GRMPKMVEQCFMGTCPPEWVAEPWTECSKKCGKGVQEREVFCQGMVSSRLPDTACDVQKKL-------PTIQECNLGNCDQEARWMAGDW 3375
RLWC K C+T + PWADGT C K C G C +E PV G+WG+W + CSR CGGGIK A REC+ P+P G YC+G+R K+KSCNT+ C Q DFR+EQCA F+GK I+ N W+PK+SG+ ++D CKLFC + G+ +YQL+ +VIDGT C + +ND CV G CR AGCD+VL+S A+ DKCGVC GDNS+C+ GT GYN+VVR+P GA+ + V Q S + D N+LAL K ++ NG++ +++ +R + YSG + E I + + +++LS+ N +RYS+ PI + Q + W W C C G + R VC R D V+ +C R P+P C DC+L W + +C CG G + C K ++ D ++ +P C +C + W Y+ W+ C C GG Q R A CV+ T N D C +K ++ R C+ CP+W +G WSE C VTCGKG RQV+C + + D C+ +P+ + C+ CASW W CS +CG G Q R V C T +VD+ C A RP+D + C +C E+ + +W G+W CS TCG G R R +C N V D S C +PV++E C+ PC W+ WS C++ CG G TR V+C ++ ++ +CD P + C+ CP+ +A P P A + +H WR W CS+TC G Q R V C + +C + KP C G CP W YG W C + CG G++ RLVVCQ +G P+ C+ KP C C W T W C+V C G + R+V C +DG E++ K+ KP + C CP WK W +C V+C +QQR+V C H++ + C T+P +++C C P+Y+W+ +W C +CG + R V C+D+ V+ C + P E C + C W+ W+ECS CGKG ++R V C + + + + Q + P++ C L +C A W G+W
Sbjct: 540 RLWCNNVNGVHKGCRTQHTPWADGTECEPGKHCKYGFCVPKEMDVPVTDGSWGSWSPFGTCSRTCGGGIKTAIRECNRPEPKNGGKYCVGRRMKFKSCNTEPCLKQKRDFRDEQCAHFDGKHFNINGLLPNVRWVPKYSGILMKDRCKLFCRVAGNTAYYQLRDRVIDGTPCGQDTNDICVQGLCRQAGCDHVLNSKARRDKCGVCGGDNSSCKTVAGTFNTVHYGYNTVVRIPAGATNIDVRQHSFSGETDDDNYLALSSSKGEFLLNGNFVVTMAKREIRIGNAVVEYSGSETAVERINSTDRIEQELLLQVLSVGKLYNPDVRYSFNIPIEDKPQQFYWNSHGPWQACSKPCQGERKRKLVCTRESDQLTVSDQRCDRLPQPGHITEPCGTDCDLRWHVASRSECS--AQCGLGYRTLDIYCAKY-----SRLDGKTEKVDDGFCSSHPKPSNREKCSGECNTGGWRYSAWTECSKSCDGGTQRRRAICVN-TRNDVLDDSKCTHQEKVTIQR-CSEFPCPQWKSGDWSE-CLVTCGKGHKHRQVWCQFGEDRLNDRMCDPETKPTSMQTCQQPECASWQAGPWGQCSVTCGQGYQLRAVKCIIGTYMSVVDDNDCNAATRPTDTQDCELPSCH-PPPAAPETRRSTYSAPRTQWRFGSWTPCSATCGKGTRMRYVSCRDENGSVADESACATLPRPVAKEECSVTPCGQWKALDWSSCSVTCGQGRATRQVMCVNYSDHVIDRSECDQDYIPETDQDCSMSPCPQRTPDSGLAQHPFQNEDYRPRSASPSRTHVLGGNQWRTGPWGACSSTCAGGSQRRVVVCQDENGYTANDCVERIKPDEQRACESGPCPQWAYGNWGEC--TKLCGGGIRTRLVVCQRSNGERFPDLSCEILDKPPDREQCNTHACPHDAAWSTGPWSSCSVSCGRGHKQRNVYCMAKDG-SHLESDYCKHLAKPHGHRKCRGGRCPKWKAGAWSQCSVSCGRGVQQRHVGCQIGTHKIARETECNPYTRPESERDCQGPRC---PLYTWRAEEWQECTKTCGEGSRYRKVVCVDDNKNEVHGARCDVSKRPVDRESCSLQPCEYVWITGEWSECSVTCGKGYKQRLVSCSEIYTGK-ENYEYSYQTTINCPGTQPPSVHPCYLRDCPVSATWRVGNW 1686 HSP 2 Score: 290.041 bits (741), Expect = 3.215e-80 Identity = 217/742 (29.25%), Postives = 321/742 (43.26%), Query Frame = 1
Query: 1042 WSECFPACNG-HQIRDFVCKRSLDGQIVASSKCSRPKPVARHRTCNFDCELMWRTQKGQCIPLKTCGNGIQKQTSMCTKVYVPTSNKKDEALSSIECRKAKIGQRPPTEIPCFVKCTSMRWVYTPWSRCDVMCGGGHQMRIAKCVDQTTNTTTADFNCNSTDKASLTRMC----------------NTHHCPK--WHAGAWSESCSVTCGKGVIQRQVFCMIDDRTVLD-NKCNQVRRPSKTKPCKARPCASWATKKWSTCSRSCGTGTQTRKVFCQTTTGQIVDEERCEAVERPSDRRRCFEKACKLKVK---LTQE------------SVGESAKFLNVKWLSGAWGKCSRTCGHGYRERITACVSNNAIVTDSYCDPSKKPVSRELCNTFPCPFWRHGAWSKCTLPCGNGTQTRLVLCG-FNGAIVSNMQCDPSQKPSDRRRCNQHRCPEAMAHDPPPVARATASHWRVTMWSECSTTCGVGHQTRSVEC----SNHEE---CEQSRKPISIMECNKGACPGWNYGQWTPCRTERGCGKGLQLRLVVCQLEDGRVLPNKGCDAQHKPLTNRTCELLPCQQQYKWHTTGWEECNVQCSHGFQYRHVTCHDEDGHDSSETNCLKYDPKPDLQKACERPACPLWKTEDWGECDVTC---IQQRNVYCARDHELVDPSTCRLQT-------KPIEQQECHHENCVRIPV-YSWKVGKWGNCGASCGYSLKARGVDCIDEAGRP 3105
W+EC +C+G Q R +C + + ++ SKC+ + V R F C +C L TCG G + + C ++ L+ C + PT + + W PW +C V CG G+Q+R KC+ T + D +CN+ + + T+ C +T+ P+ W G+W+ CS TCGKG R V C ++ +V D + C + RP + C PC W WS+CS +CG G TR+V C + ++D C+ P + C C + L Q S + +W +G WG CS TC G + R+ C N + C KP + C + PCP W +G W +CT CG G +TRLV+C NG ++ C+ KP DR +CN H CP A W WS CS +CG GH+ R+V C +H E C+ KP +C G CP W G W+ C CG+G+Q R V CQ+ ++ C+ +P + R C+ C Y W W+EC C G +YR V C D++ ++ C D + +P +W T +W EC VTC +QR V C+ + + QT +P C+ +C PV +W+VG WG+C SCG + R V C+ +P
Sbjct: 1006 WTECSKSCDGGTQRRRAICVNTRN-DVLDDSKCTHQEKVTIQRCSEFPCPQWKSGDWSEC--LVTCGKGHKHRQVWC--------QFGEDRLNDRMCDP----ETKPTSMQTCQQPECASWQAGPWGQCSVTCGQGYQLRAVKCIIGTYMSVVDDNDCNAATRPTDTQDCELPSCHPPPAAPETRRSTYSAPRTQWRFGSWT-PCSATCGKGTRMRYVSCRDENGSVADESACATLPRPVAKEECSVTPCGQWKALDWSSCSVTCGQGRATRQVMCVNYSDHVIDRSECDQDYIPETDQDCSMSPCPQRTPDSGLAQHPFQNEDYRPRSASPSRTHVLGGNQWRTGPWGACSSTCAGGSQRRVVVCQDENGYTAND-CVERIKPDEQRACESGPCPQWAYGNWGECTKLCGGGIRTRLVVCQRSNGERFPDLSCEILDKPPDREQCNTHACPHDAA-------------WSTGPWSSCSVSCGRGHKQRNVYCMAKDGSHLESDYCKHLAKPHGHRKCRGGRCPKWKAGAWSQCSVS--CGRGVQQRHVGCQIGTHKIARETECNPYTRPESERDCQGPRCPL-YTWRAEEWQECTKTCGEGSRYRKVVCVDDNKNEVHGARCDVSKRPVDRESCSLQPCEYVWITGEWSECSVTCGKGYKQRLVSCSEIYTGKENYEYSYQTTINCPGTQPPSVHPCYLRDC---PVSATWRVGNWGSCSVSCGVGVMQRSVQCLTNEDQP 1711 The following BLAST results are available for this feature:
BLAST of TCONS_00024371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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