TCONS_00024357 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024357
Unique NameTCONS_00024357
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length732

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024357 ID=TCONS_00024357|Name=TCONS_00024357|organism=Clytia hemisphaerica|type=transcript|length=732bp
AACAAGGTCGATCTCACATATTCCTCGTCAATAAAGACATCAACCCCAAT
CAACAACAATAAATCAACCATCAAAAAACAACCAGAGAAAGCATCAACAC
CAGTTCAAAGATCAATCAGAAGATatggtaaaatcaagaaaagtgTCAAC
CCGTTCTCTCCTGTACACAAACAGTTAAGCACATCAGTCCAAGGAAAGAG
AAGACAGTTGAATTATGATGTCGCTGATGAAAGTTTCCTCGCAAATCAGA
CTGCACCACCAAGTTCAAATATCAGAACGAATAGAGGATGTCTTGCCAAG
AAACGTAAATTGGAAAATGTTTTCAACTTCGACAGTTTTGAAGgtGATGA
AGATTTAAAACAACTATCCAAAGTTTTTCAAAGGAGAAAATCCAATGGAT
CAATCAAAACCTATTAAGCTATAAAGCTAATTATCTCACTCACAAACAGA
ATAAGTTATGCTCTTAAGATGCAAATAGTGCTCAAATTCCATCTAACTTT
ATGAATGTTGCCAAGGTGTGATTGCAATTGAAACCGAGAAGAAAAGGCAC
CTTGCAAAAGGATGTGTGAGCTAGAAACGTGTGTATTTATTTTTTGGGAA
GTGGAGGGGTAGGACAGGATTATTGGAAGTTGAAATTCCTATAGTGGTAT
TGTGGTATATGTTGGAACCTTTGGTTTGCTGTAATTCTAGAgggtaaaat
ttgtaaaattaagCTTTTCCTGTGTGAAGGAA
Run BLAST on NCBI

protein sequence of TCONS_00024357-protein

>TCONS_00024357-protein ID=TCONS_00024357-protein|Name=TCONS_00024357-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
NKVDLTYSSSIKTSTPINNNKSTIKKQPEKASTPVQRSIRRYGKIKKSVN
PFSPVHKQLSTSVQGKRRQLNYDVADESFLANQTAPPSSNIRTNRGCLAK
KRKLENVFNFDSFEGDEDLKQLSKVFQRRKSNGSIKTY
Run BLAST on NCBI

transcript from alignment at sc0000489:75349..77391-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024357 ID=TCONS_00024357|Name=TCONS_00024357|organism=Clytia hemisphaerica|type=transcript|length=2043bp|location=Sequence derived from alignment at sc0000489:75349..77391- (Clytia hemisphaerica)
AACAAGGTCGATCTCACATATTCCTCGTCAATAAAGACATCAACCCCAAT
CAACAACAATAAATCAACCATCAAAAAACAACCAGAGAAAGCATCAACAC
CAGTTCAAAGATCAATCAGAAGATATGGTAAAATCAAGAAAAGTGTCAAC
CCGTTCTCTCCTGTACACAAACAGGTCAGTATAGACTGGAGACGTTTATA
ATATGTGTTGCACATTTTTTGTAAGAATAAACTATATAGGAACATAAGGC
TTTGATGGTCAAAATGTTAAGAACAAGTTAAGAACGTTTTAAGGCTTTAC
AGACTCGAAAACACCCGATTTTTTAGGAATCTTAGGCTGAAAATGGTCAC
AAAGTGGAAAAAATAAGAACATTTTAAGAACATTTTTAGGCACATAACCC
AAAGATTTTGGATGTTCTTATAAAAAACGTGTATACAGTAATATAGGTGT
TATGTGTTAATGCAATACTGTGTGTGATTATTTTGTATTTCTTCTACCAA
GCATTACTTTACTTAAATCTAATTGTCTAGCGTGCAGATATGTATTTTAT
TGAATATAAATTCGTCATTCAAGTTTTTACAAAAAGGTCTAGAACAGTCA
GACAACGTCGATGCAATTTCTACAACAAGTTTCCAAACATTCTTCTCAGT
CCAAACTGTCCCTAAAGATATCGTATTCATTTGGTTTCAAGCTTCTGTCT
CAAAAATCCAATACTGCAATTATATTTGGAATGGAATAATGGCTTGAGCT
TATTTAAAAAATTTTTTTCGATTCTTCTGTAGTTAAGCACATCAGTCCAA
GGAAAGAGAAGACAGTTGAATTATGATGTCGCTGATGAAAGTTTCCTCGC
AAATCAGGTAAATAACAGTTTATGTTATGTGTTTTTCTGTCATGGAGATT
TGACTAAATTTTGAATGAATAAGGACAATGGTAAACAAGCACTTTTACCG
TCCTCGATTTGGTGGGCCAAAAATGTGGGTTATTCTAAATCACTCCACCG
TCACATAAACTCGCTAATATGTTATTAAACAATGGGTTTTTTACTTTAAA
AAGTAGTTTTTTTTTTGAAATATAGACATTACCAGCCTTCTATTTCGATG
TGTTTTTATGTTAAAACTGATAACACGTAGCATTCCAGCTTGAGTTCCTT
GATTAAGGAAAGAGAAAAGCTAACGTATTATTGCACTCCCATGTATGATT
TAATTTTCCGCAGTCCCATTCGCCTCATTTCAAATATAACTTTCGGTTTA
ACATCACAGTTGAAATTTTAACAATGAGTTTTGTTGTTTAGACTGCACCA
CCAAGTTCAAATATCAGAACGAATAGAGGATGTCTTGCCAAGAAACGTAA
ATTGGAAAATGTTTTCAACTTCGACAGTTTTGAAGGTACATTGTTCATCA
CAGCTTAACTTTTTAGGTGGTATCTGATGCGATGGATATACTTTCTATCC
AAGACCACAGTATAAGTATTCTTGTAGCTGCAATTTAAGATAATATACTG
GGATGCTCCAAATTTTACTGGATCTCAAGAAATGAGTTTTGAATACACTG
GTGATATCTTCATTTGAAGGTTTCGAGAAAATAACTCTACTTCTGGATAA
ATTTGACTTTTCCTTCGAATTTCATCTTCTTTTTATAATTCTTTATTTTT
TTAGGTGATGAAGATTTAAAACAACTATCCAAAGTTTTTCAAAGGAGAAA
ATCCAATGGATCAATCAAAACCTATTAAGCTATAAAGCTAATTATCTCAC
TCACAAACAGAATAAGTTATGCTCTTAAGATGCAAATAGTGCTCAAATTC
CATCTAACTTTATGAATGTTGCCAAGGTGTGATTGCAATTGAAACCGAGA
AGAAAAGGCACCTTGCAAAAGGATGTGTGAGCTAGAAACGTGTGTATTTA
TTTTTTGGGAAGTGGAGGGGTAGGACAGGATTATTGGAAGTTGAAATTCC
TATAGTGGTATTGTGGTATATGTTGGAACCTTTGGTTTGCTGTAATTCTA
GAGGGTAAAATTTGTAAAATTAAGCTTTTCCTGTGTGAAGGAA

Coding sequence (CDS) from alignment at sc0000489:75349..77391-

>TCONS_00024357 ID=TCONS_00024357|Name=TCONS_00024357|organism=Clytia hemisphaerica|type=CDS|length=1668bp|location=Sequence derived from alignment at sc0000489:75349..77391- (Clytia hemisphaerica)
GTGATGAAGATTTAAAACAACTATCCAAAGTTTTTCAAAGGAGAAAATCC
AATGGATCAATCAAAACCTATTAAACTGCACCACCAAGTTCAAATATCAG
AACGAATAGAGGATGTCTTGCCAAGAAACGTAAATTGGAAAATGTTTTCA
ACTTCGACAGTTTTGAAGTTAAGCACATCAGTCCAAGGAAAGAGAAGACA
GTTGAATTATGATGTCGCTGATGAAAGTTTCCTCGCAAATCAGAACAAGG
TCGATCTCACATATTCCTCGTCAATAAAGACATCAACCCCAATCAACAAC
AATAAATCAACCATCAAAAAACAACCAGAGAAAGCATCAACACCAGTTCA
AAGATCAATCAGAAGATATGGTAAAATCAAGAAAAGTGTCAACCCGTTCT
CTCCTGTACACAAACAGGTGATGAAGATTTAAAACAACTATCCAAAGTTT
TTCAAAGGAGAAAATCCAATGGATCAATCAAAACCTATTAAACTGCACCA
CCAAGTTCAAATATCAGAACGAATAGAGGATGTCTTGCCAAGAAACGTAA
ATTGGAAAATGTTTTCAACTTCGACAGTTTTGAAGTTAAGCACATCAGTC
CAAGGAAAGAGAAGACAGTTGAATTATGATGTCGCTGATGAAAGTTTCCT
CGCAAATCAGAACAAGGTCGATCTCACATATTCCTCGTCAATAAAGACAT
CAACCCCAATCAACAACAATAAATCAACCATCAAAAAACAACCAGAGAAA
GCATCAACACCAGTTCAAAGATCAATCAGAAGATATGGTAAAATCAAGAA
AAGTGTCAACCCGTTCTCTCCTGTACACAAACAGGTGATGAAGATTTAAA
ACAACTATCCAAAGTTTTTCAAAGGAGAAAATCCAATGGATCAATCAAAA
CCTATTAAACTGCACCACCAAGTTCAAATATCAGAACGAATAGAGGATGT
CTTGCCAAGAAACGTAAATTGGAAAATGTTTTCAACTTCGACAGTTTTGA
AGTTAAGCACATCAGTCCAAGGAAAGAGAAGACAGTTGAATTATGATGTC
GCTGATGAAAGTTTCCTCGCAAATCAGAACAAGGTCGATCTCACATATTC
CTCGTCAATAAAGACATCAACCCCAATCAACAACAATAAATCAACCATCA
AAAAACAACCAGAGAAAGCATCAACACCAGTTCAAAGATCAATCAGAAGA
TATGGTAAAATCAAGAAAAGTGTCAACCCGTTCTCTCCTGTACACAAACA
GGTGATGAAGATTTAAAACAACTATCCAAAGTTTTTCAAAGGAGAAAATC
CAATGGATCAATCAAAACCTATTAAACTGCACCACCAAGTTCAAATATCA
GAACGAATAGAGGATGTCTTGCCAAGAAACGTAAATTGGAAAATGTTTTC
AACTTCGACAGTTTTGAAGTTAAGCACATCAGTCCAAGGAAAGAGAAGAC
AGTTGAATTATGATGTCGCTGATGAAAGTTTCCTCGCAAATCAGAACAAG
GTCGATCTCACATATTCCTCGTCAATAAAGACATCAACCCCAATCAACAA
CAATAAATCAACCATCAAAAAACAACCAGAGAAAGCATCAACACCAGTTC
AAAGATCAATCAGAAGATATGGTAAAATCAAGAAAAGTGTCAACCCGTTC
TCTCCTGTACACAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013667XLOC_013667Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024357-exon-sc0000489-1575043694:77218..77391TCONS_00024357-exon-sc0000489-1575043694:77218..77391Clytia hemisphaericaexon
TCONS_00024357-exon-sc0000489-1575043694:76535..76609TCONS_00024357-exon-sc0000489-1575043694:76535..76609Clytia hemisphaericaexon
TCONS_00024357-exon-sc0000489-1575043694:76007..76100TCONS_00024357-exon-sc0000489-1575043694:76007..76100Clytia hemisphaericaexon
TCONS_00024357-exon-sc0000489-1575043694:75349..75737TCONS_00024357-exon-sc0000489-1575043694:75349..75737Clytia hemisphaericaexon
TCONS_00024357-exon-sc0000489-1510915933:77218..77391TCONS_00024357-exon-sc0000489-1510915933:77218..77391Clytia hemisphaericaexon
TCONS_00024357-exon-sc0000489-1510915933:76535..76609TCONS_00024357-exon-sc0000489-1510915933:76535..76609Clytia hemisphaericaexon
TCONS_00024357-exon-sc0000489-1510915933:76007..76100TCONS_00024357-exon-sc0000489-1510915933:76007..76100Clytia hemisphaericaexon
TCONS_00024357-exon-sc0000489-1510915933:75349..75737TCONS_00024357-exon-sc0000489-1510915933:75349..75737Clytia hemisphaericaexon
TCONS_00024357-exon-sc0000489-1491911889:77218..77391TCONS_00024357-exon-sc0000489-1491911889:77218..77391Clytia hemisphaericaexon
TCONS_00024357-exon-sc0000489-1491911889:76535..76609TCONS_00024357-exon-sc0000489-1491911889:76535..76609Clytia hemisphaericaexon
TCONS_00024357-exon-sc0000489-1491911889:76007..76100TCONS_00024357-exon-sc0000489-1491911889:76007..76100Clytia hemisphaericaexon
TCONS_00024357-exon-sc0000489-1491911889:75349..75737TCONS_00024357-exon-sc0000489-1491911889:75349..75737Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024357-proteinTCONS_00024357-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000489supercontigsc0000489:75349..77391 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.2301	16.339	9.98482	6.83801	16.0089	10.6987	4.27342	3.51084	2.45802	3.25708	1.5807	1.26498	0.586495	0.468523	1.50224	1.86016	2.44433	1.46146	0.432661	0.452749	0.131174	0.287918	5.21115	4.66698	25.5639	24.1151	1.2092	0.694879	3.16225	1.61092
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024357 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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