TCONS_00024352 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024352
Unique NameTCONS_00024352
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length618

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024352 ID=TCONS_00024352|Name=TCONS_00024352|organism=Clytia hemisphaerica|type=transcript|length=618bp
CAGGTTGCATCTAACGCTGTCGATGTCTTCAGTTGCGGTATAAATTCACA
AAAATAGATACACAGGTCAAAATTTGTATACCGCAATCACAGGATAGTTT
CGAATAGTAGTTGGTTATGTACTGTACATATGTCTTTGATAAAGgaaaaa
caTAAACTCTGATCCAAAATGAAGCTGGTCATTGTTTGTTGTATGGTTGC
TTTATGTAGCATCAATTCAATTCAAGGAAGCCAAGTTGGAAATATTTGTG
AAGATATCCAAACTGCTGATGTATGCAAAAGCTGGCAACACCTTTGCGCA
GGCAACCCGCATGTAGCAGAAGTATGTAAGAAGTCGTGCAATTTGTGCCC
TACTGTACCTCCAACACAAAACCCCACTCAACAAACAACAGCTCCATCAA
CGCAAAAACCATGCTTTAACATCAAAAGTTCATACCAATGTTGGTTGTGG
AGACCATTATGCAAAGTCAATAAAACTGTCCAAAGACTCTGTCAACATCG
ATGCAAATTATGCCCAAGAGGTACAGCTGCACCATCCACGGTTGCCCCGT
CAGCCTCGGCTGCTCCGTCGGCCACTTCAGCTTGATGATTTTTGGTGACG
CTTTTTGATTTGTACATa
Run BLAST on NCBI

protein sequence of TCONS_00024352-protein

>TCONS_00024352-protein ID=TCONS_00024352-protein|Name=TCONS_00024352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MKLVIVCCMVALCSINSIQGSQVGNICEDIQTADVCKSWQHLCAGNPHVA
EVCKKSCNLCPTVPPTQNPTQQTTAPSTQKPCFNIKSSYQCWLWRPLCKV
NKTVQRLCQHRCKLCPRGTAAPSTVAPSASAAPSATSA
Run BLAST on NCBI

transcript from alignment at sc0000489:120442..122650+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024352 ID=TCONS_00024352|Name=TCONS_00024352|organism=Clytia hemisphaerica|type=transcript|length=2209bp|location=Sequence derived from alignment at sc0000489:120442..122650+ (Clytia hemisphaerica)
CAGGTTGCATCTAACGCTGTCGATGTCTTCAGTTGCGGTATAAATTCACA
AAAATAGATACACAGGTCAAAATTTGTATACCGCAATCACAGGATAGTTT
CGAATAGTAGTTGGTTATGTACTGTACATATGTCTTTGATAAAGGTTTTT
AGTTATTAGTTGATTTTCTCCTTCTTCTTTCGAGGCTTAAAAAGTCTAAC
ccttttataataaaaaacaccagtgagaaaattttcaatcccttttttca
ggaaaaacaTAAACTCTGATCCAAAATGAAGCTGGTCATTGTTTGTTGTA
TGGTTGCTTTATGTAGCATCAATTCAATTCAAGGAAGCCAAGTTGGAAAT
AGTAAGTTCTCCTTGTTAGGGTGAAGTTTCGCCTTCtattatcattttga
ttcacaacgttgtttcagcgTCCATCTGACGTCTATATTTGGAGGTGGTG
GCCCGTAGTCTAAACGGtctctaagaccatgttcacataCTACGGTTTCG
TTACACTTTGAAACGAAATGAAatcattctattggttaaattcaatgttt
acgtcacttctaaccaatagaatggcttccttcatttcgtttcggtaATG
CCCCTGAGCGTTATCATGAAAccatgaaaagtaaaaaaaatcttaggaaa
tttttcgaaaattgtctCTGTAAGGGTAACTTTTTTCAATGAGACAAGGG
CGTAGAAGTGATAACCATCAGCTATTTCTGGAAAATTCACCCGATAAAAA
AAAATGCAATGCAAATTCTTCTTTAGTTTGTGAAGATATCCAAACTGCTG
ATGTATGCAAAAGCTGGCAACACCTTTGCGCAGGCAACCCGCATGTAGCA
GAAGTATGTAAGAAGTCGTGCAATTTGTGCCCTACTGTACCTCCAACACA
AAACCCCACTCAACAAACAACAGCTCCATCAAGTAAGATTAATTATTTGT
TTTGGAGCACTCAATGACCTCAATCTcgtattaaaaaaaacttttttgaa
acttttttgcatTTATTATCGTCcttaaagggattatcagatgatttttt
atatttggttTAGAGATACCTTTTATGGTCCTGAGAAACACCTCCGAAGT
TTTTGACctaattatttttcaaagctgagatattcgactttgaattttca
atttttacttaaaaacaagtgatacttttatggacctacctggttatgca
tttaacacatataattgatatctacgtgagcgtgaccattaaacaatcat
tcagaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNacgaacgaacgaacgaacgaacgaacgaacgaacga
acgaacgaacgaacgaacgaacgaacgaacgaacgaacgacggttaattt
atagtacctccaccggggtaggtccaagaATAGAAATACAACGTAAAGAC
TGTGTAAAGACttatttttagagatttcaaagtAAAATATCTTAGGCTTT
GGAAAATCATTAGGTCAATAACTCCGGAGGTGTTTATAAGCACCATAAAA
AgtatctctaagccaaatatTAAATATCATCTGAAAATCCCTTAATAAAC
TTTGTGTCCAAAGCAGTCGAAGAGAAAGAGCCCCCTAGCCACATGTGTTA
TAACCCATGCTGCTAACAAGTCTTCTAGGTATAACTAGGCccaaaactca
tttttttcaaCACAATTGTGTTTGGCATTTAAAAGGATGTAAACTTAGCC
AAGAAAGATTACTTACTTTAATGTATTTCTTTAACATACAGCGCAAAAAC
CATGCTTTAACATCAAAAGTTCATACCAATGTTGGTTGTGGAGACCATTA
TGCAAAGTCAATAAAACTGTCCAAAGACTCTGTCAACATCGATGCAAATT
ATGCCCAAGAGGTACAGCTGCACCATCCACGGTTGCCCCGTCAGCCTCGG
CTGCTCCGTCGGCCACTTCAGCTTGATGATTTTTGGTGACGCTTTTTGAT
TTGTACATa

Coding sequence (CDS) from alignment at sc0000489:120442..122650+

>TCONS_00024352 ID=TCONS_00024352|Name=TCONS_00024352|organism=Clytia hemisphaerica|type=CDS|length=1251bp|location=Sequence derived from alignment at sc0000489:120442..122650+ (Clytia hemisphaerica)
ATGAAGCTGGTCATTGTTTGTTGTATGGTTGCTTTATGTAGCATCAATTC
AATTCAAGGAAGCCAAGTTGGAAATATTTGTGAAGATATCCAAACTGCTG
ATGTATGCAAAAGCTGGCAACACCTTTGCGCAGGCAACCCGCATGTAGCA
GAAGTATGTAAGAAGTCGTGCAATTTGTGCCCTACTGTACCTCCAACACA
AAACCCCACTCAACAAACAACAGCTCCATCAACGCAAAAACCATGCTTTA
ACATCAAAAGTTCATACCAATGTTGGTTGTGGAGACCATTATGCAAAGTC
AATAAAACTGTCCAAAGACTCTGTCAACATCGATGCAAATTATGCCCAAG
AGGTACAGCTGCACCATCCACGGTTGCCCCGTCAGCCTCGGCTGCTCCGT
CGGCCACTTCAGCTTGAATGAAGCTGGTCATTGTTTGTTGTATGGTTGCT
TTATGTAGCATCAATTCAATTCAAGGAAGCCAAGTTGGAAATATTTGTGA
AGATATCCAAACTGCTGATGTATGCAAAAGCTGGCAACACCTTTGCGCAG
GCAACCCGCATGTAGCAGAAGTATGTAAGAAGTCGTGCAATTTGTGCCCT
ACTGTACCTCCAACACAAAACCCCACTCAACAAACAACAGCTCCATCAAC
GCAAAAACCATGCTTTAACATCAAAAGTTCATACCAATGTTGGTTGTGGA
GACCATTATGCAAAGTCAATAAAACTGTCCAAAGACTCTGTCAACATCGA
TGCAAATTATGCCCAAGAGGTACAGCTGCACCATCCACGGTTGCCCCGTC
AGCCTCGGCTGCTCCGTCGGCCACTTCAGCTTGAATGAAGCTGGTCATTG
TTTGTTGTATGGTTGCTTTATGTAGCATCAATTCAATTCAAGGAAGCCAA
GTTGGAAATATTTGTGAAGATATCCAAACTGCTGATGTATGCAAAAGCTG
GCAACACCTTTGCGCAGGCAACCCGCATGTAGCAGAAGTATGTAAGAAGT
CGTGCAATTTGTGCCCTACTGTACCTCCAACACAAAACCCCACTCAACAA
ACAACAGCTCCATCAACGCAAAAACCATGCTTTAACATCAAAAGTTCATA
CCAATGTTGGTTGTGGAGACCATTATGCAAAGTCAATAAAACTGTCCAAA
GACTCTGTCAACATCGATGCAAATTATGCCCAAGAGGTACAGCTGCACCA
TCCACGGTTGCCCCGTCAGCCTCGGCTGCTCCGTCGGCCACTTCAGCTTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013662XLOC_013662Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024352-proteinTCONS_00024352-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024352-exon-sc0000489-1491911889:120442..120585TCONS_00024352-exon-sc0000489-1491911889:120442..120585Clytia hemisphaericaexon
TCONS_00024352-exon-sc0000489-1510915933:120442..120585TCONS_00024352-exon-sc0000489-1510915933:120442..120585Clytia hemisphaericaexon
TCONS_00024352-exon-sc0000489-1575043694:120442..120585TCONS_00024352-exon-sc0000489-1575043694:120442..120585Clytia hemisphaericaexon
TCONS_00024352-exon-sc0000489-1491911889:120693..120792TCONS_00024352-exon-sc0000489-1491911889:120693..120792Clytia hemisphaericaexon
TCONS_00024352-exon-sc0000489-1510915933:120693..120792TCONS_00024352-exon-sc0000489-1510915933:120693..120792Clytia hemisphaericaexon
TCONS_00024352-exon-sc0000489-1575043694:120693..120792TCONS_00024352-exon-sc0000489-1575043694:120693..120792Clytia hemisphaericaexon
TCONS_00024352-exon-sc0000489-1491911889:121218..121373TCONS_00024352-exon-sc0000489-1491911889:121218..121373Clytia hemisphaericaexon
TCONS_00024352-exon-sc0000489-1510915933:121218..121373TCONS_00024352-exon-sc0000489-1510915933:121218..121373Clytia hemisphaericaexon
TCONS_00024352-exon-sc0000489-1575043694:121218..121373TCONS_00024352-exon-sc0000489-1575043694:121218..121373Clytia hemisphaericaexon
TCONS_00024352-exon-sc0000489-1491911889:122433..122650TCONS_00024352-exon-sc0000489-1491911889:122433..122650Clytia hemisphaericaexon
TCONS_00024352-exon-sc0000489-1510915933:122433..122650TCONS_00024352-exon-sc0000489-1510915933:122433..122650Clytia hemisphaericaexon
TCONS_00024352-exon-sc0000489-1575043694:122433..122650TCONS_00024352-exon-sc0000489-1575043694:122433..122650Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000489supercontigsc0000489:120442..122650 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.8216	2.19928	0.392858	1.05696	0.935818	0.462185	0.669128	0.522025	0.950253	1.17704	1.23035	0.635471	80.1311	73.9906	87.0834	114.544	7.94432	5.27271	112.588	104.306	15.4317	16.5676	48.0379	45.5723	126.194	139.389	0.713648	0.634687	0.577665	1.1771
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003582ShKT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024352 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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