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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024351 ID=TCONS_00024351|Name=TCONS_00024351|organism=Clytia hemisphaerica|type=transcript|length=484bp
TTTAGTAACTTTGGTTTTGTTGGTGGTTGGTGTCAAAGTAAGCACAAGTG
AAGAAGTTTGTAAAAACGAGCAAACGATAAGATGGTGTATTCGAGCAGTT
ATTTACCCAAACAACAATTGTAACAAAATCAGTGAATTCTCGCAAAAGAC
TTGTCGAAAATATTGTAATTATTGTGGAGAAGGCGAATGTAAAGATTTAT
TGAAAGAAGAAGATTGTGAGAAATTCAAAGATTTGTGTGGAAGAGCTCTT
TACATAAGAACAAATTGTCGAAAAACATGTCAATATTGTCGTTGGGGATG
CAAAGACACACTACCTAAAGAGAAATGCCAACGTTGGAAACCATTATGTG
ATAAAAGCCCCTACGTCAAACAGAATTGCTTGGATACATGTGGGGTCACA
TCTTGTACTTGGCGAAAGAATTAAAGATTGCCTTAATTTTCCATTCAATG
CGCCAATTTCTTTCTAGACTAATATGAAGGTTTT Run BLAST on NCBI protein sequence of TCONS_00024351-protein >TCONS_00024351-protein ID=TCONS_00024351-protein|Name=TCONS_00024351-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
LVTLVLLVVGVKVSTSEEVCKNEQTIRWCIRAVIYPNNNCNKISEFSQKT
CRKYCNYCGEGECKDLLKEEDCEKFKDLCGRALYIRTNCRKTCQYCRWGC
KDTLPKEKCQRWKPLCDKSPYVKQNCLDTCGVTSCTWRKN Run BLAST on NCBI transcript from alignment at sc0000489:97618..99345+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024351 ID=TCONS_00024351|Name=TCONS_00024351|organism=Clytia hemisphaerica|type=transcript|length=1728bp|location=Sequence derived from alignment at sc0000489:97618..99345+ (Clytia hemisphaerica)
TTTAGTAACTTTGGTTTTGTTGGTGGTTGGTGTCAAAGTAAGCACAAGTG
GTAGGTAAAGTTTATTATTGAAGCgttaaattttttaaacaagTTGACTG
GTAAATCATTATTTCTTGAATTGACCAGTACACAATTACCCCTGTAAAAA
ATAGTAACTTTCAATATTTGAATCAATAGAAATGAAGATTGTGAGTAAGT
GCACTTTCCGAAATTCCGATGGAAGGGTCAATAAAGGCAGAATGATTTAT
TATATGATATTATATAAATTATGCATCCGAATGATAGACATTGTGTGACG
TGTcgtggcactcataaggttcAGCCTCGCGTGAGAACGCTCTCCCAGTA
TCGTTCGAGGGTTATGTATACGCCATGACTTGGCATCTCACGTTTGTCAA
GTCATAGCGTCTAtcagcgccgtgattcctactctttcgtgggtaggacc
catcccgaatgcattcagagggctcatatctatctatcCATATATCTATC
TATAGCCCGATTAATGTCATTaaatttattcttttctttGTCGTCACATT
AGAAGAAGTTTGTAAAAACGAGCAAACGATAAGATGGTGTATTCGAGCAG
TTATTTACCCAAACAACAATTGTAACAAAATCAGTGAATTCTCGCAAAAG
ACTTGTCGAAAATATTGTAATTATTGTGGAGAAGGTATGTATTTGCGATA
TTCATgaagtaatttttttatatagaaGCACCCAAAGTAAACCGGGTGTT
TGCCACTAAATTTgagttcaaaaaataaaactagCAGCAAACGAATACCC
GGGATTTTTGGGTGCTTCCATGTAAAACATTACGTTGTGAATATCGTGAA
TAGTTAAATGGAGCGTACTTCAGCCGTATCCAGTCCCTTTGTTTCTACAC
gtgtttttatataagaacataaggcttcgatggccaaaatgttaagaaca
agttaagaacattttaaggctttgcggacttgAAAACAACTATATTtgtt
aggaaaatggacaaaaatacatcaaaaatgGGGAtaaagtaagaacattt
taagaacatttttaggcttgaaactcaaaaagttaatatCATCTGAAGGC
TCAAAGATTttagatgtttttataaaaaaacgtataacttttttcttcaa
tagaCTACAGTTAATTCTATTTAATTCggcgttctactattcgattcACT
CCATTATTTGACATTATCGTCAACAAGAAATTCGCATAAACAACTCTAta
ctattcgatacactccTTTTCGATGGAAATCCGATTCCCCCTTGAAAGTC
GAATTCCTTTTAAACCTCAGATCGTGTTCTATCAAATTNGATGGAAATCC
GACTCCCCTTTTGAAAGTCGAATTCCTTTTGAAACCTCAGATCATGTTCT
ATCaaattttccttctttttcttaAGGCGAATGTAAAGATTTATTGAAAG
AAGAAGATTGTGAGAAATTCAAAGATTTGTGTGGAAGAGCTCTTTACATA
AGAACAAATTGTCGAAAAACATGTCAATATTGTCGTTGGGGATGCAAAGA
CACACTACCTAAAGAGAAATGCCAACGTTGGAAACCATTATGTGATAAAA
GCCCCTACGTCAAACAGAATTGCTTGGATACATGTGGGGTCACATCTTGT
ACTTGGCGAAAGAATTAAAGATTGCCTTAATTTTCCATTCAATGCGCCAA
TTTCTTTCTAGACTAATATGAAGGTTTT Coding sequence (CDS) from alignment at sc0000489:97618..99345+ >TCONS_00024351 ID=TCONS_00024351|Name=TCONS_00024351|organism=Clytia hemisphaerica|type=CDS|length=1269bp|location=Sequence derived from alignment at sc0000489:97618..99345+ (Clytia hemisphaerica)
TTAGTAACTTTGGTTTTGTTGGTGGTTGGTGTCAAAGTAAGCACAAGTGA
AGAAGTTTGTAAAAACGAGCAAACGATAAGATGGTGTATTCGAGCAGTTA
TTTACCCAAACAACAATTGTAACAAAATCAGTGAATTCTCGCAAAAGACT
TGTCGAAAATATTGTAATTATTGTGGAGAAGGCGAATGTAAAGATTTATT
GAAAGAAGAAGATTGTGAGAAATTCAAAGATTTGTGTGGAAGAGCTCTTT
ACATAAGAACAAATTGTCGAAAAACATGTCAATATTGTCGTTGGGGATGC
AAAGACACACTACCTAAAGAGAAATGCCAACGTTGGAAACCATTATGTGA
TAAAAGCCCCTACGTCAAACAGAATTGCTTGGATACATGTGGGGTCACAT
CTTGTACTTGGCGAAAGAATTAATTAGTAACTTTGGTTTTGTTGGTGGTT
GGTGTCAAAGTAAGCACAAGTGAAGAAGTTTGTAAAAACGAGCAAACGAT
AAGATGGTGTATTCGAGCAGTTATTTACCCAAACAACAATTGTAACAAAA
TCAGTGAATTCTCGCAAAAGACTTGTCGAAAATATTGTAATTATTGTGGA
GAAGGCGAATGTAAAGATTTATTGAAAGAAGAAGATTGTGAGAAATTCAA
AGATTTGTGTGGAAGAGCTCTTTACATAAGAACAAATTGTCGAAAAACAT
GTCAATATTGTCGTTGGGGATGCAAAGACACACTACCTAAAGAGAAATGC
CAACGTTGGAAACCATTATGTGATAAAAGCCCCTACGTCAAACAGAATTG
CTTGGATACATGTGGGGTCACATCTTGTACTTGGCGAAAGAATTAATTAG
TAACTTTGGTTTTGTTGGTGGTTGGTGTCAAAGTAAGCACAAGTGAAGAA
GTTTGTAAAAACGAGCAAACGATAAGATGGTGTATTCGAGCAGTTATTTA
CCCAAACAACAATTGTAACAAAATCAGTGAATTCTCGCAAAAGACTTGTC
GAAAATATTGTAATTATTGTGGAGAAGGCGAATGTAAAGATTTATTGAAA
GAAGAAGATTGTGAGAAATTCAAAGATTTGTGTGGAAGAGCTCTTTACAT
AAGAACAAATTGTCGAAAAACATGTCAATATTGTCGTTGGGGATGCAAAG
ACACACTACCTAAAGAGAAATGCCAACGTTGGAAACCATTATGTGATAAA
AGCCCCTACGTCAAACAGAATTGCTTGGATACATGTGGGGTCACATCTTG
TACTTGGCGAAAGAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024351-exon-sc0000489-1491911889:97618..97667 | TCONS_00024351-exon-sc0000489-1491911889:97618..97667 | Clytia hemisphaerica | exon |
| TCONS_00024351-exon-sc0000489-1510915933:97618..97667 | TCONS_00024351-exon-sc0000489-1510915933:97618..97667 | Clytia hemisphaerica | exon |
| TCONS_00024351-exon-sc0000489-1575043694:97618..97667 | TCONS_00024351-exon-sc0000489-1575043694:97618..97667 | Clytia hemisphaerica | exon |
| TCONS_00024351-exon-sc0000489-1491911889:98170..98301 | TCONS_00024351-exon-sc0000489-1491911889:98170..98301 | Clytia hemisphaerica | exon |
| TCONS_00024351-exon-sc0000489-1510915933:98170..98301 | TCONS_00024351-exon-sc0000489-1510915933:98170..98301 | Clytia hemisphaerica | exon |
| TCONS_00024351-exon-sc0000489-1575043694:98170..98301 | TCONS_00024351-exon-sc0000489-1575043694:98170..98301 | Clytia hemisphaerica | exon |
| TCONS_00024351-exon-sc0000489-1491911889:99044..99345 | TCONS_00024351-exon-sc0000489-1491911889:99044..99345 | Clytia hemisphaerica | exon |
| TCONS_00024351-exon-sc0000489-1510915933:99044..99345 | TCONS_00024351-exon-sc0000489-1510915933:99044..99345 | Clytia hemisphaerica | exon |
| TCONS_00024351-exon-sc0000489-1575043694:99044..99345 | TCONS_00024351-exon-sc0000489-1575043694:99044..99345 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000489 | supercontig | sc0000489:97618..99345 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003582 | ShKT_dom |
Blast
The following BLAST results are available for this feature:
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