TCONS_00024339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024339
Unique NameTCONS_00024339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1608

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024339 ID=TCONS_00024339|Name=TCONS_00024339|organism=Clytia hemisphaerica|type=transcript|length=1608bp
CTTTTATTCAGATTCAAAATGGCATCACAATTGAATTTACAACAGAAAAT
TACTACATTGAAATCGAAGAATATCGATCCATCAAAATGCACCCCACGAA
CGTCATTGTATAATCAAATATTGACAAATGCAAAATCCACCATCGACAAC
CAAAACAGAAAGTTCAACCTTGGGAATGGCCAGTTAATTAACGACCCAAT
CCTTGCCGCTGATCAGCTTCTCTTTAGAGAatatgctgattcagcattat
TCAACACCAACCGCCATGATCCTGTATTTATTCCCCCAGTTTTTCAATCA
CACCAATACGCGAAGAAAGATTCAACCTCACATCTCCTTGACTACGATGT
TGACATAAACACTCTTAAGAAATGTTTGGATAATTTGAAGAAGGATTCGC
CAGCCCATTGGTTCACACGTGAGCTTCAATATTTCCATTATCTCCATTGG
TTAACAAAGGGACTTCAAGATTTCTCTGAATTGCAAGAAAACAACACTGA
CAGGGAAATCAATGGAAAAGAATTCAGTAATTGGATTCTCAATGTAAAGA
TAAAGTATCTAATGGTCAAAGAGTTGGCAACAGTCAATATGACTTTACCA
TCAACAACTGAGGACAAAAACACATTCATCCAAGCATGTATTCAGGAATT
GGCTTTGAAATCCCCGGGATCAAAATTGgaacaaactctcaaaaagATGT
TAAAAGgtgttaaaaaagaaattgaaagctTGGTCAAACAAAACCCACCA
TCCCATCCCACAATAAAATGGCTTTTCGGATTAGTTTTATCGGAGCTTGG
TGAAAAAGGAGAACACTCATTCTTCCGTAAACTCTATTCCCTCAAAGATG
ACCCTGTTCTTGAAGATACTGTGATTCTCAGTTCCATCAACTTTCTCACC
AATGTCCAAAAGAAAATGCATCAGGAGATTGACGTCCTTATATTCTCATG
GACCAAGAAATTAATCATAGGCGTAGAAATCAAACGGACACTGACTATAA
AAGCTTTTGACCAGTTGGATAAATACCATAAATTGATAGAGGAGAGATTG
AGTGATCAATTGGGACAAGGCTGGACGTACCATCCAGCCATTTTGGTTGA
AAAGGACGACCTTTCTTTTAACAATCAACATTACATTGACCAAGAAACAG
ATTTGAAATGTTGGTTATCCAACTTGTTGGCAAAATACCCGACCGTTCCT
TCTGGAATACCTCTTATCCCAGCAGTAAATCAAGTTAAAGACCTCCTAAG
AATCGTTGTGTTTGCCATTCATGCTTCAAAAACAGCACCCATTACGACAT
CGAACTGGGTGGAGTATATCTCGCAAGCCATCGATACCGTCTGCACTACT
GACAACATACTCTTTTACAGTCAGTGTCAACTTCCCATCATGAAGACAGA
CACTTCTGAATTCAATAGGATCCTCTTTCATGCCCCTTACGGATGCGGCA
AGTCTTTCATCCTTCAGGAGAAAGCAAAACAATTGAGTGGAATGAAGAAG
TACAAAGGACGTGTCATGTATGTCATTGAGAGGAGTGATGATCTAGAAAC
CCTTCTTCAGTGGAGATTGAAAGACGAATTGGGAAACGAACATGGAGTTG
AGGTTTAT
Run BLAST on NCBI

protein sequence of TCONS_00024339-protein

>TCONS_00024339-protein ID=TCONS_00024339-protein|Name=TCONS_00024339-protein|organism=Clytia hemisphaerica|type=polypeptide|length=536bp
LLFRFKMASQLNLQQKITTLKSKNIDPSKCTPRTSLYNQILTNAKSTIDN
QNRKFNLGNGQLINDPILAADQLLFREYADSALFNTNRHDPVFIPPVFQS
HQYAKKDSTSHLLDYDVDINTLKKCLDNLKKDSPAHWFTRELQYFHYLHW
LTKGLQDFSELQENNTDREINGKEFSNWILNVKIKYLMVKELATVNMTLP
STTEDKNTFIQACIQELALKSPGSKLEQTLKKMLKGVKKEIESLVKQNPP
SHPTIKWLFGLVLSELGEKGEHSFFRKLYSLKDDPVLEDTVILSSINFLT
NVQKKMHQEIDVLIFSWTKKLIIGVEIKRTLTIKAFDQLDKYHKLIEERL
SDQLGQGWTYHPAILVEKDDLSFNNQHYIDQETDLKCWLSNLLAKYPTVP
SGIPLIPAVNQVKDLLRIVVFAIHASKTAPITTSNWVEYISQAIDTVCTT
DNILFYSQCQLPIMKTDTSEFNRILFHAPYGCGKSFILQEKAKQLSGMKK
YKGRVMYVIERSDDLETLLQWRLKDELGNEHGVEVY
Run BLAST on NCBI

transcript from alignment at sc0000487:234741..236454-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024339 ID=TCONS_00024339|Name=TCONS_00024339|organism=Clytia hemisphaerica|type=transcript|length=1714bp|location=Sequence derived from alignment at sc0000487:234741..236454- (Clytia hemisphaerica)
CTTTTATTCAGATTCAAAATGGCATCACAATTGAATTTACAACAGAAAAT
TACTACATTGAAATCGAAGAATATCGATCCATCAAAATGCACCCCACGAA
CGTCATTGTATAATCAAATATTGACAAATGCAAAATCCACCATCGACAAC
CAAAACAGAAAGTTCAACCTTGGGAATGGCCAGTTAATTAACGACCCAAT
CCTTGCCGCTGATCAGCTTCTCTTTAGAGAATATGCTGATTCAGCATTAT
TCAACACCAACCGCCATGATCCTGTATTTATTCCCCCAGTTTTTCAATCA
CACCAATACGCGAAGAAAGATTCAACCTCACATCTCCTTGACTACGATGT
TGACATAAACACTCTTAAGAAATGTTTGGATAATTTGAAGAAGGATTCGC
CAGCCCATTGGTTCACACGTGAGCTTCAATATTTCCATTATCTCCATTGG
TTAACAAAGGGACTTCAAGATTTCTCTGAATTGCAAGAAAACAACACTGA
CAGGGAAATCAATGGAAAAGAATTCAGTAATTGGATTCTCAATGTAAAGA
TAAAGTATCTAATGGTCAAAGAGTTGGCAACAGTCAATATGACTTTACCA
TCAACAACTGAGGACAAAAACACATTCATCCAAGCATGTATTCAGGAATT
GGCTTTGAAATCCCCGGGATCAAAATTGGAACAAACTCTCAAAAAGGTAA
CTATCAATTTTGTCCACAGAAATCCTTTAATAGAGGCACAGAGAGACCTG
TAATTAATTGTGCAAATTAAATTGTGTTAAAAATCTCTAATTTCATTTCC
AGATGTTAAAAGGTGTTAAAAAAGAAATTGAAAGCTTGGTCAAACAAAAC
CCACCATCCCATCCCACAATAAAATGGCTTTTCGGATTAGTTTTATCGGA
GCTTGGTGAAAAAGGAGAACACTCATTCTTCCGTAAACTCTATTCCCTCA
AAGATGACCCTGTTCTTGAAGATACTGTGATTCTCAGTTCCATCAACTTT
CTCACCAATGTCCAAAAGAAAATGCATCAGGAGATTGACGTCCTTATATT
CTCATGGACCAAGAAATTAATCATAGGCGTAGAAATCAAACGGACACTGA
CTATAAAAGCTTTTGACCAGTTGGATAAATACCATAAATTGATAGAGGAG
AGATTGAGTGATCAATTGGGACAAGGCTGGACGTACCATCCAGCCATTTT
GGTTGAAAAGGACGACCTTTCTTTTAACAATCAACATTACATTGACCAAG
AAACAGATTTGAAATGTTGGTTATCCAACTTGTTGGCAAAATACCCGACC
GTTCCTTCTGGAATACCTCTTATCCCAGCAGTAAATCAAGTTAAAGACCT
CCTAAGAATCGTTGTGTTTGCCATTCATGCTTCAAAAACAGCACCCATTA
CGACATCGAACTGGGTGGAGTATATCTCGCAAGCCATCGATACCGTCTGC
ACTACTGACAACATACTCTTTTACAGTCAGTGTCAACTTCCCATCATGAA
GACAGACACTTCTGAATTCAATAGGATCCTCTTTCATGCCCCTTACGGAT
GCGGCAAGTCTTTCATCCTTCAGGAGAAAGCAAAACAATTGAGTGGAATG
AAGAAGTACAAAGGACGTGTCATGTATGTCATTGAGAGGAGTGATGATCT
AGAAACCCTTCTTCAGTGGAGATTGAAAGACGAATTGGGAAACGAACATG
GAGTTGAGGTTTAT

Coding sequence (CDS) from alignment at sc0000487:234741..236454-

>TCONS_00024339 ID=TCONS_00024339|Name=TCONS_00024339|organism=Clytia hemisphaerica|type=CDS|length=3216bp|location=Sequence derived from alignment at sc0000487:234741..236454- (Clytia hemisphaerica)
ATGTTAAAAGGTGTTAAAAAAGAAATTGAAAGCTTGGTCAAACAAAACCC
ACCATCCCATCCCACAATAAAATGGCTTTTCGGATTAGTTTTATCGGAGC
TTGGTGAAAAAGGAGAACACTCATTCTTCCGTAAACTCTATTCCCTCAAA
GATGACCCTGTTCTTGAAGATACTGTGATTCTCAGTTCCATCAACTTTCT
CACCAATGTCCAAAAGAAAATGCATCAGGAGATTGACGTCCTTATATTCT
CATGGACCAAGAAATTAATCATAGGCGTAGAAATCAAACGGACACTGACT
ATAAAAGCTTTTGACCAGTTGGATAAATACCATAAATTGATAGAGGAGAG
ATTGAGTGATCAATTGGGACAAGGCTGGACGTACCATCCAGCCATTTTGG
TTGAAAAGGACGACCTTTCTTTTAACAATCAACATTACATTGACCAAGAA
ACAGATTTGAAATGTTGGTTATCCAACTTGTTGGCAAAATACCCGACCGT
TCCTTCTGGAATACCTCTTATCCCAGCAGTAAATCAAGTTAAAGACCTCC
TAAGAATCGTTGTGTTTGCCATTCATGCTTCAAAAACAGCACCCATTACG
ACATCGAACTGGGTGGAGTATATCTCGCAAGCCATCGATACCGTCTGCAC
TACTGACAACATACTCTTTTACAGTCAGTGTCAACTTCCCATCATGAAGA
CAGACACTTCTGAATTCAATAGGATCCTCTTTCATGCCCCTTACGGATGC
GGCAAGTCTTTCATCCTTCAGGAGAAAGCAAAACAATTGAGTGGAATGAA
GAAGTACAAAGGACGTGTCATGTATGTCATTGAGAGGAGTGATGATCTAG
AAACCCTTCTTCAGTGGAGATTGAAAGACGAATTGGGAAACGAACATGGA
GTTGAGGTTTATCTTTTATTCAGATTCAAAATGGCATCACAATTGAATTT
ACAACAGAAAATTACTACATTGAAATCGAAGAATATCGATCCATCAAAAT
GCACCCCACGAACGTCATTGTATAATCAAATATTGACAAATGCAAAATCC
ACCATCGACAACCAAAACAGAAAGTTCAACCTTGGGAATGGCCAGTTAAT
TAACGACCCAATCCTTGCCGCTGATCAGCTTCTCTTTAGAGAATATGCTG
ATTCAGCATTATTCAACACCAACCGCCATGATCCTGTATTTATTCCCCCA
GTTTTTCAATCACACCAATACGCGAAGAAAGATTCAACCTCACATCTCCT
TGACTACGATGTTGACATAAACACTCTTAAGAAATGTTTGGATAATTTGA
AGAAGGATTCGCCAGCCCATTGGTTCACACGTGAGCTTCAATATTTCCAT
TATCTCCATTGGTTAACAAAGGGACTTCAAGATTTCTCTGAATTGCAAGA
AAACAACACTGACAGGGAAATCAATGGAAAAGAATTCAGTAATTGGATTC
TCAATGTAAAGATAAAGTATCTAATGGTCAAAGAGTTGGCAACAGTCAAT
ATGACTTTACCATCAACAACTGAGGACAAAAACACATTCATCCAAGCATG
TATTCAGGAATTGGCTTTGAAATCCCCGGGATCAAAATTGGAACAAACTC
TCAAAAAGATGTTAAAAGGTGTTAAAAAAGAAATTGAAAGCTTGGTCAAA
CAAAACCCACCATCCCATCCCACAATAAAATGGCTTTTCGGATTAGTTTT
ATCGGAGCTTGGTGAAAAAGGAGAACACTCATTCTTCCGTAAACTCTATT
CCCTCAAAGATGACCCTGTTCTTGAAGATACTGTGATTCTCAGTTCCATC
AACTTTCTCACCAATGTCCAAAAGAAAATGCATCAGGAGATTGACGTCCT
TATATTCTCATGGACCAAGAAATTAATCATAGGCGTAGAAATCAAACGGA
CACTGACTATAAAAGCTTTTGACCAGTTGGATAAATACCATAAATTGATA
GAGGAGAGATTGAGTGATCAATTGGGACAAGGCTGGACGTACCATCCAGC
CATTTTGGTTGAAAAGGACGACCTTTCTTTTAACAATCAACATTACATTG
ACCAAGAAACAGATTTGAAATGTTGGTTATCCAACTTGTTGGCAAAATAC
CCGACCGTTCCTTCTGGAATACCTCTTATCCCAGCAGTAAATCAAGTTAA
AGACCTCCTAAGAATCGTTGTGTTTGCCATTCATGCTTCAAAAACAGCAC
CCATTACGACATCGAACTGGGTGGAGTATATCTCGCAAGCCATCGATACC
GTCTGCACTACTGACAACATACTCTTTTACAGTCAGTGTCAACTTCCCAT
CATGAAGACAGACACTTCTGAATTCAATAGGATCCTCTTTCATGCCCCTT
ACGGATGCGGCAAGTCTTTCATCCTTCAGGAGAAAGCAAAACAATTGAGT
GGAATGAAGAAGTACAAAGGACGTGTCATGTATGTCATTGAGAGGAGTGA
TGATCTAGAAACCCTTCTTCAGTGGAGATTGAAAGACGAATTGGGAAACG
AACATGGAGTTGAGGTTTATCTTTTATTCAGATTCAAAATGGCATCACAA
TTGAATTTACAACAGAAAATTACTACATTGAAATCGAAGAATATCGATCC
ATCAAAATGCACCCCACGAACGTCATTGTATAATCAAATATTGACAAATG
CAAAATCCACCATCGACAACCAAAACAGAAAGTTCAACCTTGGGAATGGC
CAGTTAATTAACGACCCAATCCTTGCCGCTGATCAGCTTCTCTTTAGAGA
ATATGCTGATTCAGCATTATTCAACACCAACCGCCATGATCCTGTATTTA
TTCCCCCAGTTTTTCAATCACACCAATACGCGAAGAAAGATTCAACCTCA
CATCTCCTTGACTACGATGTTGACATAAACACTCTTAAGAAATGTTTGGA
TAATTTGAAGAAGGATTCGCCAGCCCATTGGTTCACACGTGAGCTTCAAT
ATTTCCATTATCTCCATTGGTTAACAAAGGGACTTCAAGATTTCTCTGAA
TTGCAAGAAAACAACACTGACAGGGAAATCAATGGAAAAGAATTCAGTAA
TTGGATTCTCAATGTAAAGATAAAGTATCTAATGGTCAAAGAGTTGGCAA
CAGTCAATATGACTTTACCATCAACAACTGAGGACAAAAACACATTCATC
CAAGCATGTATTCAGGAATTGGCTTTGAAATCCCCGGGATCAAAATTGGA
ACAAACTCTCAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013650XLOC_013650Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024339-proteinTCONS_00024339-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024339-exon-sc0000487-1575043694:235759..236454TCONS_00024339-exon-sc0000487-1575043694:235759..236454Clytia hemisphaericaexon
TCONS_00024339-exon-sc0000487-1575043694:234741..235652TCONS_00024339-exon-sc0000487-1575043694:234741..235652Clytia hemisphaericaexon
TCONS_00024339-exon-sc0000487-1510915933:235759..236454TCONS_00024339-exon-sc0000487-1510915933:235759..236454Clytia hemisphaericaexon
TCONS_00024339-exon-sc0000487-1510915933:234741..235652TCONS_00024339-exon-sc0000487-1510915933:234741..235652Clytia hemisphaericaexon
TCONS_00024339-exon-sc0000487-1491911889:235759..236454TCONS_00024339-exon-sc0000487-1491911889:235759..236454Clytia hemisphaericaexon
TCONS_00024339-exon-sc0000487-1491911889:234741..235652TCONS_00024339-exon-sc0000487-1491911889:234741..235652Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000487supercontigsc0000487:234741..236454 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0770942	0.0839051	0.0492482	0.0878521	1.24679	0.826956	1.14946	1.13231	0.559049	0.532322	0.810377	0.563697	1.43094	0.804553	0.74394	0.876387	0.783273	0.659399	1.58407	2.36337	0.845438	0.765278	0.259995	0.963716	0.567505	0.786288	1.26548	1.53229	1.5369	2.17934
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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