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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024330 ID=TCONS_00024330|Name=TCONS_00024330|organism=Clytia hemisphaerica|type=transcript|length=989bp
ttttaaatcatgggAAATCCATCAATTAAGACACAAGTCTATACATTTAT
GAGCTGACATTGTTGCAAAGTGTGTTTTTATTATGgcagaaaaatatgaa
attgaagagaattcttcatTGACATTTCAAGACTCTCCACGTCACAAGAA
AGGATTTTTTATTAGCAAAGGCCAACTTATAGTCTGCCTTTTAGCTGTGA
TATGCTTGATAATAATTATAGCTGTACTGTCTGCTACATTCAGTTGGTAT
GCAGCCAAGAATGATAATACTAATGGGAAGTCAGatatgAAGAAAGGTGG
TTCAAATAAAACTACCATGGCTCCAACAACTGTCCCAACAACACCAGGAA
CAGAAGTTTATCATAATATTCGTTTACCTAAATACATTAGACCCATTCAT
TATGTAGTGGCTTTGGAAATTGATATGGTGCTAGAGTTTGTAGATGGTAC
AACAAACATCAAGACTGAAGTCTCAAAACGCTCAAAATATATCATGGTGC
ACGCTATGAAATTTAATAACGTTAAAGTCgttgtaaaaaaatttgatact
cAAGAAAAATACCCCCTTGAGAAAGAGCATGGTGATAATGGCGGCTTTTT
ATAcaaacaaaatctttattttgttattgaaGCTCATGATTATTTTGAAG
TTGGAAATTATTCTTTGGAATTCAAATTCGATTATAAATTGCGAAAAGAT
TTGGCTGGATTTTATTTGTCTACTTACAATAATACAAAGGGTCAAATTGT
GAAAGTCGCTGCTACGCAATTTGAGCCCGTGGACGCCCGTTCAgcattcc
catgttttgacgaACCAGCAATGAAAGCGACTTTCGATATCTCAATGAAA
CGAGATAAAAGTTATCTTGCATTGAGTAACATGCCGGTCATCAGAACTAA
AGCTGATGGAGACGAAGTGACCAATTATTTTAAAACAACTCCCATCGTGT
CCACTTACTTGATCGTGTTTGTAATTTGTGATTTCGAAA Run BLAST on NCBI transcript from alignment at sc0000487:83261..85854- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024330 ID=TCONS_00024330|Name=TCONS_00024330|organism=Clytia hemisphaerica|type=transcript|length=2594bp|location=Sequence derived from alignment at sc0000487:83261..85854- (Clytia hemisphaerica)
TTTTAAATCATGGGAAATCCATCAATTAAGACACAAGTCTATACATTTAT
GAGCTGACATTGTTGCAAAGTGTGTTTTTATTATGGCAGAAAAATATGAA
ATTGAAGAGAATTCTTCATTGACATTTCAAGACTCTCCACGTCACAAGAA
AGGATTTTTTATTAGCAAAGGCCAACTTATAGTCTGCCTTTTAGCTGTGA
TATGCTTGATAATAATTATAGCTGTACTGTCTGCTACATTCAGTTGGTAT
GCAGCCAAGAATGATAATACTAATGGGAAGTCAGGTACTGTATAACTAGT
TTCATAAGACCTGTATTTTTTTTATTTTTTTGGTCTATGAACATTTGCAG
ATGATCTTTCATTTCAAATTTAATCATCATTTGCTTATAATGATTAAATT
TTTAAAACAATTGCGTGNATAGTTTCATAAGACCTGTGTTTTTTATTTTT
TGGTATATTAACATTTGCAGATGATCTTTATTAAGACCAGAATATAGAAA
TATTATTAAAAATTTTTCACAGAAGATAAAGGCCCCCCCTAGCGGTTTGC
GTGAATGCGTGAATTGGAAAGCTTTGCGTGAACAAAAATTGTGTGAATTG
CGAAAAAAAACGTTGCGTGAATTTGGGAAAAAAATTTGCCTGGTTGGTGA
ATTTAAGGTACGCTGGGGGGGGGCCTCATAGAGGAAGCATGTTAAAAAGC
ATTATGTTCATACCATAAAATCGATAATCAATAATCAATCATTTCTGTAG
GGTAATGTGTTGAAGTTACTGCGGTGAAAGGAATTAAATTAAAGGGAAAA
TGTTTTTAGCTATAATAACTATTTTCCTTCTTTAATGAAATAAAGTTTTG
CAAAACAATTACTCATTTAAAGTCATGATTCAAAGTATTTCTATTTATAA
TACTATCTAAAAATATATAAATAATTTGTTTTATTTTGATAATATTTGTT
TTAACGCATATTACAATGTCTAAAAGTATTAGAAACAGACAACATGTGAT
TTATGCTAATCTAGTCTTAAAAATCTAAATAAGATTTATGCATCCATTTT
AATTTACAATTTCAATTTCTGTATCCAATATTTTTTTTTTTTTCAGATAT
GAAGAAAGGTGGTTCAAATAAAACTACCATGGCTCCAACAACTGTCCCAA
CAACACCAGGAACAGAAGTTTATCATAATATTCGTTTACCTAAATACATT
AGACCCATTCATTATGTAGTGGGTAGGTTATTTCATTTAAAAGTGTCAAA
ATGTGCTCCAATGAAAAATTTGCTGGAATACTCTCTTTTACAGATTCTAT
TATTAGTTTAAGAATTTAAAATTTCAAGCTTCTTGCCATCAATTACATTC
ATACATTAAGACTTTTCCGTAACTTACGTTTTATTCCCTCTTAGCTTTGG
AAATTGATATGGTGCTAGAGTTTGTAGATGGTACAACAAACATCAAGACT
GAAGTCTCAAAACGCTCAAAATATATCATGGTGCACGCTATGAAATTTAA
TAACGTTAAAGTCGTTGTAAAAAAATTTGATACTCAAGAAAAATACCCCC
TTGAGAAAGAGCATGGTGATAATGGCGGCTTTTTATACAAACAAAATCTT
TATTTTGTTATTGAAGCTCATGATTATTTTGAAGTTGGAAATTATTCTTT
GGAATTCAAATTCGATTATAAATTGCGAAAAGATTTGGCTGGATTTTATT
TGTCTACTTACAATAATACAAAGGGTCAAATTGTGTAAGAAATCATTTTA
TTTGAAAATGTTGTTATAAAAAAGAATCTTATTTCCAATCAAGCTATTAT
TATAATAACAATTACAACTTAAAATAATTTTCAGATAAGATTGATAGAGA
GTAAGGCACTATAAAAGGTAGCTAAAGTAATTTACCAGGAAATTTTTGTT
CACCTTGACCAATTAAGTATGGCACTCCGCAACCTCAAATTTTTGCTCCT
ACTGGTGGTACAGGACTGAAAAAAATTCAGCAATTTCATATGATACCAGT
GGGACTTTATGAAAATTTCTCTGTGAAAACTATAAGTTGAAGGTTAAGTG
TTGCTACGATAGTGCTCTTACCAATAAAAGAAGTATGATAAAATTTCAAA
AAAAAAACACATATTTTGCTATACACAAAGATTTTTTCAAGCACTTTGTG
CTGGGGGGAGGGGGCCGTTTTTGTAAACTTAGATTGAATTTCTAATATGC
CTGAAAGGGAACTTCCTCAGCAAAACTGTACATTTAGGAAGCTGGGGAAC
TTGTGGGTGTTCAGAGGGCAAAGCTCCCAAAAATTCTTGAATATATAGAT
AATTAGTTATTGCTGCTCATAAAAAACTCACTGAGGAATTTCCTTTTTTT
CACAGGAAAGTCGCTGCTACGCAATTTGAGCCCGTGGACGCCCGTTCAGC
ATTCCCATGTTTTGACGAACCAGCAATGAAAGCGACTTTCGATATCTCAA
TGAAACGAGATAAAAGTTATCTTGCATTGAGTAACATGCCGGTCATCAGA
ACTAAAGCTGATGGAGACGAAGTGACCAATTATTTTAAAACAACTCCCAT
CGTGTCCACTTACTTGATCGTGTTTGTAATTTGTGATTTCGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024330-exon-sc0000487-1575043694:85571..85854 | TCONS_00024330-exon-sc0000487-1575043694:85571..85854 | Clytia hemisphaerica | exon |
| TCONS_00024330-exon-sc0000487-1575043694:84633..84758 | TCONS_00024330-exon-sc0000487-1575043694:84633..84758 | Clytia hemisphaerica | exon |
| TCONS_00024330-exon-sc0000487-1575043694:84121..84460 | TCONS_00024330-exon-sc0000487-1575043694:84121..84460 | Clytia hemisphaerica | exon |
| TCONS_00024330-exon-sc0000487-1575043694:83261..83499 | TCONS_00024330-exon-sc0000487-1575043694:83261..83499 | Clytia hemisphaerica | exon |
| TCONS_00024330-exon-sc0000487-1510915933:85571..85854 | TCONS_00024330-exon-sc0000487-1510915933:85571..85854 | Clytia hemisphaerica | exon |
| TCONS_00024330-exon-sc0000487-1510915933:84633..84758 | TCONS_00024330-exon-sc0000487-1510915933:84633..84758 | Clytia hemisphaerica | exon |
| TCONS_00024330-exon-sc0000487-1510915933:84121..84460 | TCONS_00024330-exon-sc0000487-1510915933:84121..84460 | Clytia hemisphaerica | exon |
| TCONS_00024330-exon-sc0000487-1510915933:83261..83499 | TCONS_00024330-exon-sc0000487-1510915933:83261..83499 | Clytia hemisphaerica | exon |
| TCONS_00024330-exon-sc0000487-1491911889:85571..85854 | TCONS_00024330-exon-sc0000487-1491911889:85571..85854 | Clytia hemisphaerica | exon |
| TCONS_00024330-exon-sc0000487-1491911889:84633..84758 | TCONS_00024330-exon-sc0000487-1491911889:84633..84758 | Clytia hemisphaerica | exon |
| TCONS_00024330-exon-sc0000487-1491911889:84121..84460 | TCONS_00024330-exon-sc0000487-1491911889:84121..84460 | Clytia hemisphaerica | exon |
| TCONS_00024330-exon-sc0000487-1491911889:83261..83499 | TCONS_00024330-exon-sc0000487-1491911889:83261..83499 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000487 | supercontig | sc0000487:83261..85854 - |
Blast
BLAST of TCONS_00024330 vs. Swiss-Prot (Human)
Match: ERAP1 (Endoplasmic reticulum aminopeptidase 1 OS=Homo sapiens GN=ERAP1 PE=1 SV=3) HSP 1 Score: 122.865 bits (307), Expect = 2.879e-30 Identity = 72/216 (33.33%), Postives = 123/216 (56.94%), Query Frame = 2
Query: 359 YHNIRLPKYIRPIHYVVALEIDMVLEFVDGTTNIKTEVSKRSKYIMVHA--MXXXXXXXXXXXXDTQEKYPLE-KEHGDNGGFLYKQNLYFVIEAHDYFEVG-NYSLEFKFDYKLRKDLAGFYLSTYNNTKGQIVKVAATQFEPVDARSAFPCFDEPAMKATFDISMKRDKSYLALSNMPVIR--TKADGDEVTNYFKTTPIVSTYLIVFVICDFE 988
++ IRLP+Y+ P+HY + + ++ GTT ++ S+ + I++H+ ++ + + + + PL+ EH + + A + VG Y++ + L + GFY STY +G++ +A+TQFEP AR AFPCFDEPA KA+F I ++R+ +LA+SNMP+++ T A+G + ++F T +STYL+ F+I DFE
Sbjct: 49 WNKIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKGAGERLSEEPLQVLEH--------PRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRTKEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEG-LIEDHFDVTVKMSTYLVAFIISDFE 255
The following BLAST results are available for this feature:
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