TCONS_00024299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024299
Unique NameTCONS_00024299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024299 ID=TCONS_00024299|Name=TCONS_00024299|organism=Clytia hemisphaerica|type=transcript|length=686bp
aagaatacaattttTGTATCACATTTCACCTTTTTTTCTCAGTACGCTTT
CATTCAAGCAttcaaaagacaaaagacatCAACTTTCTCCTCCGTTTGGC
AAATTTTGCTTTATTTGGAGTGTATTTACAAACTTACACAAATCTCTTTC
TTTGATACTCAACAcgatgtaaaataaaaagatacaGCTGCTACCTCGTG
TTAAAAGGTGTGAAAGTACGTTTCTTTGTGAAAACATTTTACATAAAGAT
GAGATTTTCCTTTCTAAATAGGATTATTTACAACTTGTAAGCATATCTTG
TATCATACTGCACGTGGAGCTCTACAATCGTGTATATTACAATAGTCAAG
AAAGTTACATAACACTAAGGGTAGACTTCTTCTTTTGACCTACCCTATTA
TTTTTTCTGCATTCTTTTCCCCGTGAATCATGATTTTCTCACGGGGGTCG
Cgaacaccaaaataccgacgcatttttcttgaatcatcatcgctttttta
tataagaaccagtaaattttcgTGATTTCACGACGTGATTTTCAGGCTCG
AATGTCATTAATTTCCTTAGTTTATTCActtattttcttaaaagttaaaa
gagccgtttttgaaatctgacatttttaattaaaaaaacattttttaact
cggattGAAGGAAAGGGCAAATACTGGCATTTTTTG
Run BLAST on NCBI

transcript from alignment at sc0000486:246189..246874

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024299 ID=TCONS_00024299|Name=TCONS_00024299|organism=Clytia hemisphaerica|type=transcript|length=686bp|location=Sequence derived from alignment at sc0000486:246189..246874 (Clytia hemisphaerica)
CAAAAAATGCCAGTATTTGCCCTTTCCTTCaatccgagttaaaaaatgtt
tttttaattaaaaatgtcagatttcaaaaacggctcttttaacttttaag
aaaataagTGAATAAACTAAGGAAATTAATGACATTCGAGCCTGAAAATC
ACGTCGTGAAATCAcgaaaatttactggttcttatataaaaaagcgatga
tgattcaagaaaaatgcgtcggtattttggtgttcGCGACCCCCGTGAGA
AAATCATGATTCACGGGGAAAAGAATGCAGAAAAAATAATAGGGTAGGTC
AAAAGAAGAAGTCTACCCTTAGTGTTATGTAACTTTCTTGACTATTGTAA
TATACACGATTGTAGAGCTCCACGTGCAGTATGATACAAGATATGCTTAC
AAGTTGTAAATAATCCTATTTAGAAAGGAAAATCTCATCTTTATGTAAAA
TGTTTTCACAAAGAAACGTACTTTCACACCTTTTAACACGAGGTAGCAGC
tgtatctttttattttacatcgTGTTGAGTATCAAAGAAAGAGATTTGTG
TAAGTTTGTAAATACACTCCAAATAAAGCAAAATTTGCCAAACGGAGGAG
AAAGTTGatgtcttttgtcttttgaaTGCTTGAATGAAAGCGTACTGAGA
AAAAAAGGTGAAATGTGATACAaaaattgtattctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013638XLOC_013638Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024299-exon-sc0000486-1491911889:246189..246874TCONS_00024299-exon-sc0000486-1491911889:246189..246874Clytia hemisphaericaexon
TCONS_00024299-exon-sc0000486-1510915933:246189..246874TCONS_00024299-exon-sc0000486-1510915933:246189..246874Clytia hemisphaericaexon
TCONS_00024299-exon-sc0000486-1575043694:246189..246874TCONS_00024299-exon-sc0000486-1575043694:246189..246874Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000486supercontigsc0000486:246189..246874 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.80281	0.290116	0.505279	0.618894	1.00301	0.158519	0.191246	0.578345	0.376055	0.698708	0.0753537	0.198138	0.148397	0.256853	0.168934	0.181293	0.167503	0.210805	0.158128	0.082735	0.43147	0.105228	0	0.310124	1.08471	1.26161	0	0	0	0.252324
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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