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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024285 ID=TCONS_00024285|Name=TCONS_00024285|organism=Clytia hemisphaerica|type=transcript|length=855bp
TCATCTTCAAAGTTCATTTGCTTAAGAAGAACACACAATCACTcacaaaa
atgaagatttggAAGGCTTTGTTACTCGTCTCCTTCTTGGTGTACACAGT
TCACTGTGAAACAGAAGAAGAGACAAAGGAAGCAGATATTGCTGAAGATG
AAGAAGCAGGAGAGATTGAGATGAAAGATGAAGAGATGAACACAATGGAA
GATGATCGAGAAGACGAACAAACGAATGACGAAGATGACGAGGATCAACC
ACAACAAGAAGACGAAGAACAACAAAACGACATCGAAGAAgatgaaaatg
ACGAAGACGCCTCTCGCCACAAATACCGTCCAGTAGTGGTTTCCAAAAAG
ACGCTCACCGTCTTCAAGAACAGAAAAGACCAATGCAGAATTGCAAAGAA
AAAAGTCCGATGCTACAACACACGAAAATTGTGTGTCAAACGTGACTATA
AGAAACGATGTATCCGTGCCGTCGTCAAGAGAATCTGCTTGTACCAATTC
ACCAAATCTTGCCGATTCTGCACACGTACTTTCATCCGAACATGTTATCG
ATACAGATACGGACACAAGAAATACAGAATCCGATGCAGAAATTGTTGTT
ACAAAACACGATGTAATCGAAAGAACGTTCGATCCAACACAAGAAGAGTG
GTTGTCAAACGAACCTTCTTCAACATCAAGCCAACCtacagaccaaaata
ttaaatTCATGGATTTTCTGAACATTGAACGAAACAGACCTGAAATCGAA
CACCGcctaaaactaatttttttttaaaataaggaATATTTTTCCTTTGT
AAGCGCttacattttcttctttaaactgtaaaatatgaaataacTTGAAA
CAAAC Run BLAST on NCBI protein sequence of TCONS_00024285-protein >TCONS_00024285-protein ID=TCONS_00024285-protein|Name=TCONS_00024285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
IFKVHLLKKNTQSLTKMKIWKALLLVSFLVYTVHCETEEETKEADIAEDE
EAGEIEMKDEEMNTMEDDREDEQTNDEDDEDQPQQEDEEQQNDIEEDEND
EDASRHKYRPVVVSKKTLTVFKNRKDQCRIAKKKVRCYNTRKLCVKRDYK
KRCIRAVVKRICLYQFTKSCRFCTRTFIRTCYRYRYGHKKYRIRCRNCCY
KTRCNRKNVRSNTRRVVVKRTFFNIKPTYRPKY Run BLAST on NCBI transcript from alignment at sc0000486:146170..147275+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024285 ID=TCONS_00024285|Name=TCONS_00024285|organism=Clytia hemisphaerica|type=transcript|length=1106bp|location=Sequence derived from alignment at sc0000486:146170..147275+ (Clytia hemisphaerica)
TCATCTTCAAAGTTCATTTGCTTAAGAAGAACACACAATCACTcacaaaa
atgaagatttggAAGGCTTTGTTACTCGTCTCCTTCTTGGTGTACACAGT
TCACTGTGAAACAGAAGAAGAGACAAAGGAAGCAGATATTGCTGAAGATG
AAGAAGCAGGAGAGATTGAGATGAAAGATGAAGAGATGAACACAATGGAA
GATGATCGAGAAGACGAACAAACGAATGACGAAGATGACGAGGATCAACC
ACAACAAGAAGACGAAGAACAACAAAACGACATCGAAGAAgatgaaaatg
gtaaaacaTATGATTATTTGAAGTTCTTTTCCATATAAGTATTTTTTCTT
TGCAATGCATATGATCTATATAATCTTCATCAGTTTCTTTTATATTCTTC
TCAAAAGAAAGAATTTGTGAGTTTCCTCGTTTTATTGAGAGTCTGGTTTG
TTCGACTTCTTCTTTCTATTGCTTACTGCAACGTTGATAAAATGACATAT
CGTTTCTTCGACTAAAACTCATTGTTGATTGAGATACTTTTTTCTCCGCA
GACGAAGACGCCTCTCGCCACAAATACCGTCCAGTAGTGGTTTCCAAAAA
GACGCTCACCGTCTTCAAGAACAGAAAAGACCAATGCAGAATTGCAAAGA
AAAAAGTCCGATGCTACAACACACGAAAATTGTGTGTCAAACGTGACTAT
AAGAAACGATGTATCCGTGCCGTCGTCAAGAGAATCTGCTTGTACCAATT
CACCAAATCTTGCCGATTCTGCACACGTACTTTCATCCGAACATGTTATC
GATACAGATACGGACACAAGAAATACAGAATCCGATGCAGAAATTGTTGT
TACAAAACACGATGTAATCGAAAGAACGTTCGATCCAACACAAGAAGAGT
GGTTGTCAAACGAACCTTCTTCAACATCAAGCCAACCtacagaccaaaat
attaaatTCATGGATTTTCTGAACATTGAACGAAACAGACCTGAAATCGA
ACACCGcctaaaactaatttttttttaaaataaggaATATTTTTCCTTTG
TAAGCGCttacattttcttctttaaactgtaaaatatgaaataacTTGAA
ACAAAC Coding sequence (CDS) from alignment at sc0000486:146170..147275+ >TCONS_00024285 ID=TCONS_00024285|Name=TCONS_00024285|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at sc0000486:146170..147275+ (Clytia hemisphaerica)
ATCTTCAAAGTTCATTTGCTTAAGAAGAACACACAATCACTcacaaaaat
gaagatttggAAGGCTTTGTTACTCGTCTCCTTCTTGGTGTACACAGTTC
ACTGTGAAACAGAAGAAGAGACAAAGGAAGCAGATATTGCTGAAGATGAA
GAAGCAGGAGAGATTGAGATGAAAGATGAAGAGATGAACACAATGGAAGA
TGATCGAGAAGACGAACAAACGAATGACGAAGATGACGAGGATCAACCAC
AACAAGAAGACGAAGAACAACAAAACGACATCGAAGAAgatgaaaatgAC
GAAGACGCCTCTCGCCACAAATACCGTCCAGTAGTGGTTTCCAAAAAGAC
GCTCACCGTCTTCAAGAACAGAAAAGACCAATGCAGAATTGCAAAGAAAA
AAGTCCGATGCTACAACACACGAAAATTGTGTGTCAAACGTGACTATAAG
AAACGATGTATCCGTGCCGTCGTCAAGAGAATCTGCTTGTACCAATTCAC
CAAATCTTGCCGATTCTGCACACGTACTTTCATCCGAACATGTTATCGAT
ACAGATACGGACACAAGAAATACAGAATCCGATGCAGAAATTGTTGTTAC
AAAACACGATGTAATCGAAAGAACGTTCGATCCAACACAAGAAGAGTGGT
TGTCAAACGAACCTTCTTCAACATCAAGCCAACCtacagaccaaaatatt
aaATCTTCAAAGTTCATTTGCTTAAGAAGAACACACAATCACTcacaaaa
atgaagatttggAAGGCTTTGTTACTCGTCTCCTTCTTGGTGTACACAGT
TCACTGTGAAACAGAAGAAGAGACAAAGGAAGCAGATATTGCTGAAGATG
AAGAAGCAGGAGAGATTGAGATGAAAGATGAAGAGATGAACACAATGGAA
GATGATCGAGAAGACGAACAAACGAATGACGAAGATGACGAGGATCAACC
ACAACAAGAAGACGAAGAACAACAAAACGACATCGAAGAAgatgaaaatg
ACGAAGACGCCTCTCGCCACAAATACCGTCCAGTAGTGGTTTCCAAAAAG
ACGCTCACCGTCTTCAAGAACAGAAAAGACCAATGCAGAATTGCAAAGAA
AAAAGTCCGATGCTACAACACACGAAAATTGTGTGTCAAACGTGACTATA
AGAAACGATGTATCCGTGCCGTCGTCAAGAGAATCTGCTTGTACCAATTC
ACCAAATCTTGCCGATTCTGCACACGTACTTTCATCCGAACATGTTATCG
ATACAGATACGGACACAAGAAATACAGAATCCGATGCAGAAATTGTTGTT
ACAAAACACGATGTAATCGAAAGAACGTTCGATCCAACACAAGAAGAGTG
GTTGTCAAACGAACCTTCTTCAACATCAAGCCAACCtacagaccaaaata
ttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024285-exon-sc0000486-1491911889:146170..146469 | TCONS_00024285-exon-sc0000486-1491911889:146170..146469 | Clytia hemisphaerica | exon |
| TCONS_00024285-exon-sc0000486-1510915933:146170..146469 | TCONS_00024285-exon-sc0000486-1510915933:146170..146469 | Clytia hemisphaerica | exon |
| TCONS_00024285-exon-sc0000486-1575043694:146170..146469 | TCONS_00024285-exon-sc0000486-1575043694:146170..146469 | Clytia hemisphaerica | exon |
| TCONS_00024285-exon-sc0000486-1491911889:146721..147275 | TCONS_00024285-exon-sc0000486-1491911889:146721..147275 | Clytia hemisphaerica | exon |
| TCONS_00024285-exon-sc0000486-1510915933:146721..147275 | TCONS_00024285-exon-sc0000486-1510915933:146721..147275 | Clytia hemisphaerica | exon |
| TCONS_00024285-exon-sc0000486-1575043694:146721..147275 | TCONS_00024285-exon-sc0000486-1575043694:146721..147275 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000486 | supercontig | sc0000486:146170..147275 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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