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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024276 ID=TCONS_00024276|Name=TCONS_00024276|organism=Clytia hemisphaerica|type=transcript|length=2310bpRun BLAST on NCBI transcript from alignment at sc0000486:103575..128320+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024276 ID=TCONS_00024276|Name=TCONS_00024276|organism=Clytia hemisphaerica|type=transcript|length=24746bp|location=Sequence derived from alignment at sc0000486:103575..128320+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00024276 vs. Swiss-Prot (Human)
Match: DYH10 (Dynein heavy chain 10, axonemal OS=Homo sapiens GN=DNAH10 PE=1 SV=4) HSP 1 Score: 511.146 bits (1315), Expect = 2.815e-157 Identity = 283/655 (43.21%), Postives = 396/655 (60.46%), Query Frame = 1
Query: 400 KRGSLTGESQDQNTNEPEEVLVKK------TKIITENITE--HCIYMGSSAPVEGKDGAAFFFSHNSPNPIPSPASLDEANSVLPEYFEFGLVDNTSIMNLEESLMQVYNVLLSYNNHK-------------NESFTNQDGTPMTNEAIIQQQKNQDSKNKLFVRDEFLIQLQKFTSQITRTIKQIEGDIKLDIPMYAWNLTTDIAGQARDQHLVSMLEETIHSWEITIASAVERVLKRLPQGNGPLAEVDFWRERNATLSAIFEQMNLPVVERALQILDSVHSDSLASFKYHQHELTKYFVEAKDNVRFLSTLERHFKNLSMGNSFQNVLDTIPSLMNALHMVWIISRHYNKDERMVPLMERIAWEVAERVARVINIKKVLREPPIVIKKKAEDARGSLHSWKSSYFEVRARIEASGRDARWEFDRKRLFERTDYMAKICEDINDIAQVMEEFHNIFGPELKSVTGDPKRIDDVLARVEALVIPFENAAFDPFNIRYANNWNAVMDWFRKQVVNIDNEAKHFIDDSFKTLRSAEGAFDMLLKFKHIRSREAINNQMMRKFNDILLQFGKEVDQVYDMFKEHESDPPICKNYPPVAGAILWERSLFFRIKASILKFQVMEDMLNSETGKLVTRKYVAVARIMKAYEEQKYTVWRE 2301
KR SL ES Q N +E + K+ +K ++I E H + + P E D FF N+ I + EA ++PE E+G+++ + L+ + QV+ LS+N H+ N S D PM EA+ + + +RDEFL+ +QKF S I RT++Q+EG+IKL++P+ + + +++ A D V +LE+ + +W I++AVE LK+ PQG GPLAE++FWRERNATLSA+ EQ LP+V + L ++ S +A+ + EL K+ EA DNVRFLST+ER+FKN++ G+ F VLDTIP++M+AL MVWIISRHYNKDERM+PLMERIAWE+AERV RV+N++ + +E + K +AR +L WK +YF+ RA+IEASGR+ RWEFDRKRLFERTDYMA IC+D++D+ Q++EEF+NIFGPELK+VTGDPKRIDDVL RV+ LV P EN FDPF+I+ + W VMD F+ +V+ ID K F+ + + N ++K H PP VAGAI WERSLFFRIK +IL+FQ ++++L+S+ G+ V +KY+ V R MK YE++KY W E
Sbjct: 40 KRVSLRTESLGQPLNREDEEMDKEISEKLPSKRTAKHIMEKMHLHMLCTPLPEEFLDQNVVFFLRNTKEAISEATDMKEAMEIMPETLEYGIINANVLHFLKNIICQVFLPALSFNQHRTSTTVGVTSGEVSNSSEHESDLPPMPGEAV-------EYHSIQLIRDEFLMNVQKFASNIQRTMQQLEGEIKLEMPIIS--VEGEVSDLAADPETVDILEQCVINWLNQISTAVEAQLKKTPQGKGPLAEIEFWRERNATLSALHEQTKLPIVRKVLDVIKESDSMLVANLQPVFTELFKFHTEASDNVRFLSTVERYFKNITHGSGFHVVLDTIPAMMSALRMVWIISRHYNKDERMIPLMERIAWEIAERVCRVVNLRTLFKENRASAQSKTLEARNTLRLWKKAYFDTRAKIEASGREDRWEFDRKRLFERTDYMATICQDLSDVLQILEEFYNIFGPELKAVTGDPKRIDDVLCRVDGLVTPMENLTFDPFSIKSSQFWKYVMDEFKIEVL-IDIINKIFVQN--------------------------LENP--------------------PLYKNH---PP-------VAGAIYWERSLFFRIKHTILRFQEVQEILDSDRGQEVKQKYLEVGRTMKEYEDRKYEQWME 628 The following BLAST results are available for this feature:
BLAST of TCONS_00024276 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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