TCONS_00024255 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024255
Unique NameTCONS_00024255
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2849

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024255 ID=TCONS_00024255|Name=TCONS_00024255|organism=Clytia hemisphaerica|type=transcript|length=2849bp
ATTAGCAgctacaaaagaaaaacaatggtTCAATGTACAGACATTTACAC
AATTTAAAACCGAAATCAGCATACTTTTATCTTTGTGAAATTGATTACAA
AAATTGTGTTCTACTTTTCCTATcccaaaaacaaaagtttgttGAAATAA
ATTATAATATCAATCAATACCTGGATATGATAACTGGACAAAAAGGTGTA
CAACGCTGTAAACAATACCTGACATAAAtggttctttttcttttttggga
tAGTTAAAAGTGCAAGGGTTCAGTGATTCAATCTTATGGTAGATTAAACA
taatatgattttttattataatagaATCGAGTGACGTGCAAGAGTGACAA
TTGATGTAAGTTATAAAAATATAGCAaatcgaaaattaaaaaatattttt
aatgccTGGTATAATATACAAAGTCGCCAgttatattattttataaaagt
aaataaacatgTATGTGTGATTTCACCTTCTAAGCGAGAATCattcttaa
ttttcttaaattttcagtaAGCTGGATACAGAAACAAACCAGTGAATtat
taggcgtacaaactttcgcgagcagaaactttcgcgaggacgaaaaatcg
cgaaattcacgaatttaacggaaaaataattttcgcgagcataaactttc
gcgaatcaagacgtaaaattgagaattttcacataaaacaatggcttaga
gggacaaatacttcttaaattggcttgaaacatttgtcctttgacttatt
agtcttttagcaggcaaAAAAGtaccataaaagttacattttattcaaag
tttgaagttttacagattttctattttttcaagaatttttcgcgagcata
aactttcacgaATGGCCCtacctagaatttttaaatacatttactttcgc
gaaaagggccaaaattcacgaaaatcgcgaaagtttctgctcgcgaaagt
ttgtacgcccaAAGTAGATGAATCTTTAATGGGCAAAGGCAGTTGACAGG
ACTGTAACGCCCTAAAACGAACTTCATACATTATGTGTTTATGTCCAGAT
ACCCCCGTCTACCTTACTGGAAGGTTGAGTACGATGTGCACTCAAAACCA
CCCCAATGGCGTTTTAAAGCtagaaataatatttttatatcCCCATAAAT
ATTTCGATAAAAAATATTCACTAGAGTTCATCCCCACTAAAGGAGAAACA
CCCCTGTCTACCGGGAcactgacacaggggtgtgtctAGGTTTGAATTGT
ACAAGTAAACCCTCCTTATTGGCTGGAATATGAAAAATACCAGAAGTGGC
TTTAATTTCCTCTTCTTTCTGCAAAGAAACCACttcgaaattcaacaaaa
tgtGATATAACGTGATCTTCATTTCCATCATGGCAAATTTTTGACCAATA
CAATTCCTCGGTCCGGCTGAAAATGGTATATAAGTGAAAGGGTTCCGgtc
cttgttttcattttcctcaGTCAGAAATCTCTCTGGCTTAAATTTGAGTG
GTTCATCCCAATATCGAGGATCTTGCTGCAGTGCCAAGATACACATACAA
AATGTTGTACCTTTTGGATATCTGGTTGAGTTAACAACCATATCTTCTTG
CAAGACTCGGCTAAATGCTGGTGCTGATGGATGTAATCGCATTACCTCTT
TAACAACACATTCAAGGTACTTGAGTTCTTTGACAGTCTCATGCACTGAT
AACCCAAGCTTATTCACATGTGCACATTCCTCAAATGCTTTGGCTTGCTT
ATCCTGGTTTAGGCCAAGCATAAATAAGCACCATACCAGCTCAGTAGCCA
CAGTATCATAACCAGCAATTAAGAAAGTGTGAGTCTCATTCATAATGTCT
TCAACAACGAATTCATCATTGTTCATATTGACCAGTAAAGTATCCAGGAA
AATTGCTTGTTTTTTACTGGAATCTGTTTGTTCAGTTCGAAGCTGTTCCA
CTCTTTTCTCTACCATGCTTTTAGAAAATTGTTTAAAAGAATTCAAACGT
GAGTAGAATTCTTTGCCATCTTCAAACCATTGGAATAGCCATTTTGGTCG
ATACCATGGCACCTTGTCACGCCagatcataagcttaaaaattcGATCAA
CCCCTTGAGCCATTTCCCAGATTTTAGCTTGGTCGTGACCGCTTTCTGCA
GTACCACATTGTATACCCATTGATGTTTCCAGTAAAATACCAAATGAATG
ACTTTTCATCTCTTGAATTGCATTAAATGTCTTTTCACCCTCCAAATTTC
CATCTTTTAAGTGCGAGACAAGTTGTTTGGTGTGTTTCTCCATGACAACA
AGAAAATCTGACAATATATTAAAATGAAATGAAGGTGTCAACATCTTTCT
TCGTTTTCGCCATGAATCACCTGTCCCAGTAAACAAGCTGTTATGACCAA
TAACATCATGGAAAATCCAATAATTATCTGATTTAGTAATCTCTTGATTA
CtaatcaaaagtttttcaatagCATTCCTATCTTTGGTGAAAACAATACC
ACGATTGAAAACCCATAAAATcacactttcatttttattcaaccATTTGA
GGTGTGCTTCGTGAAAATCTACCTCATCAAAATTGATCAATCCAAGGATA
TGCCCAAAAAAAGGAATATAGCACATAGGTACTTTTGGAAAATGTTCCCA
AGGATGAACAACCCAATACCATAAAATCTTAACTCCAACGTATAAGCATA
ACAAtgcacaaaatatttctaaaatcatttttgttttcactataaaaaaa
aagaatttcataaaatttttaaaagtataAAAGATAGTACATGTTATCTG
TAATCATTGGGGTTAAAAATGAGTTAAACTGAGAAGTACATTTGAAAGC
Run BLAST on NCBI

protein sequence of TCONS_00024255-protein

>TCONS_00024255-protein ID=TCONS_00024255-protein|Name=TCONS_00024255-protein|organism=Clytia hemisphaerica|type=polypeptide|length=517bp
MKFFFFIVKTKMILEIFCALLCLYVGVKILWYWVVHPWEHFPKVPMCYIP
FFGHILGLINFDEVDFHEAHLKWLNKNESVILWVFNRGIVFTKDRNAIEK
LLISNQEITKSDNYWIFHDVIGHNSLFTGTGDSWRKRRKMLTPSFHFNIL
SDFLVVMEKHTKQLVSHLKDGNLEGEKTFNAIQEMKSHSFGILLETSMGI
QCGTAESGHDQAKIWEMAQGVDRIFKLMIWRDKVPWYRPKWLFQWFEDGK
EFYSRLNSFKQFSKSMVEKRVEQLRTEQTDSSKKQAIFLDTLLVNMNNDE
FVVEDIMNETHTFLIAGYDTVATELVWCLFMLGLNQDKQAKAFEECAHVN
KLGLSVHETVKELKYLECVVKEVMRLHPSAPAFSRVLQEDMVVNSTRYPK
GTTFCMCILALQQDPRYWDEPLKFKPERFLTEENENKDRNPFTYIPFSAG
PRNCIGQKFAMMEMKITLYHILLNFEVVSLQKEEEIKATSGIFHIPANKE
GLLVQFKPRHTPVSVSR
Run BLAST on NCBI

transcript from alignment at sc0000482:19285..22133

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024255 ID=TCONS_00024255|Name=TCONS_00024255|organism=Clytia hemisphaerica|type=transcript|length=2849bp|location=Sequence derived from alignment at sc0000482:19285..22133 (Clytia hemisphaerica)
GCTTTCAAATGTACTTCTCAGTTTAACTCATTTTTAACCCCAATGATTAC
AGATAACATGTACTATCTTTtatacttttaaaaattttatgaaattcttt
ttttttatagtgaaaacaaaaatgattttagaaatattttgtgcaTTGTT
ATGCTTATACGTTGGAGTTAAGATTTTATGGTATTGGGTTGTTCATCCTT
GGGAACATTTTCCAAAAGTACCTATGTGCTATATTCCTTTTTTTGGGCAT
ATCCTTGGATTGATCAATTTTGATGAGGTAGATTTTCACGAAGCACACCT
CAAATggttgaataaaaatgaaagtgtgATTTTATGGGTTTTCAATCGTG
GTATTGTTTTCACCAAAGATAGGAATGctattgaaaaacttttgattaGT
AATCAAGAGATTACTAAATCAGATAATTATTGGATTTTCCATGATGTTAT
TGGTCATAACAGCTTGTTTACTGGGACAGGTGATTCATGGCGAAAACGAA
GAAAGATGTTGACACCTTCATTTCATTTTAATATATTGTCAGATTTTCTT
GTTGTCATGGAGAAACACACCAAACAACTTGTCTCGCACTTAAAAGATGG
AAATTTGGAGGGTGAAAAGACATTTAATGCAATTCAAGAGATGAAAAGTC
ATTCATTTGGTATTTTACTGGAAACATCAATGGGTATACAATGTGGTACT
GCAGAAAGCGGTCACGACCAAGCTAAAATCTGGGAAATGGCTCAAGGGGT
TGATCgaatttttaagcttatgatctGGCGTGACAAGGTGCCATGGTATC
GACCAAAATGGCTATTCCAATGGTTTGAAGATGGCAAAGAATTCTACTCA
CGTTTGAATTCTTTTAAACAATTTTCTAAAAGCATGGTAGAGAAAAGAGT
GGAACAGCTTCGAACTGAACAAACAGATTCCAGTAAAAAACAAGCAATTT
TCCTGGATACTTTACTGGTCAATATGAACAATGATGAATTCGTTGTTGAA
GACATTATGAATGAGACTCACACTTTCTTAATTGCTGGTTATGATACTGT
GGCTACTGAGCTGGTATGGTGCTTATTTATGCTTGGCCTAAACCAGGATA
AGCAAGCCAAAGCATTTGAGGAATGTGCACATGTGAATAAGCTTGGGTTA
TCAGTGCATGAGACTGTCAAAGAACTCAAGTACCTTGAATGTGTTGTTAA
AGAGGTAATGCGATTACATCCATCAGCACCAGCATTTAGCCGAGTCTTGC
AAGAAGATATGGTTGTTAACTCAACCAGATATCCAAAAGGTACAACATTT
TGTATGTGTATCTTGGCACTGCAGCAAGATCCTCGATATTGGGATGAACC
ACTCAAATTTAAGCCAGAGAGATTTCTGACtgaggaaaatgaaaacaagg
acCGGAACCCTTTCACTTATATACCATTTTCAGCCGGACCGAGGAATTGT
ATTGGTCAAAAATTTGCCATGATGGAAATGAAGATCACGTTATATCacat
tttgttgaatttcgaaGTGGTTTCTTTGCAGAAAGAAGAGGAAATTAAAG
CCACTTCTGGTATTTTTCATATTCCAGCCAATAAGGAGGGTTTACTTGTA
CAATTCAAACCTagacacacccctgtgtcagtgTCCCGGTAGACAGGGGT
GTTTCTCCTTTAGTGGGGATGAACTCTAGTGAATATTTTTTATCGAAATA
TTTATGGGgatataaaaatattatttctaGCTTTAAAACGCCATTGGGGT
GGTTTTGAGTGCACATCGTACTCAACCTTCCAGTAAGGTAGACGGGGGTA
TCTGGACATAAACACATAATGTATGAAGTTCGTTTTAGGGCGTTACAGTC
CTGTCAACTGCCTTTGCCCATTAAAGATTCATCTACTTtgggcgtacaaa
ctttcgcgagcagaaactttcgcgattttcgtgaattttggcccttttcg
cgaaagtaaatgtatttaaaaattctaggtaGGGCCATtcgtgaaagttt
atgctcgcgaaaaattcttgaaaaaatagaaaatctgtaaaacttcaaac
tttgaataaaatgtaacttttatggtaCTTTTttgcctgctaaaagacta
ataagtcaaaggacaaatgtttcaagccaatttaagaagtatttgtccct
ctaagccattgttttatgtgaaaattctcaattttacgtcttgattcgcg
aaagtttatgctcgcgaaaattatttttccgttaaattcgtgaatttcgc
gatttttcgtcctcgcgaaagtttctgctcgcgaaagtttgtacgcctaa
taATTCACTGGTTTGTTTCTGTATCCAGCTtactgaaaatttaagaaaat
taagaatGATTCTCGCTTAGAAGGTGAAATCACACATAcatgtttattta
cttttataaaataatataacTGGCGACTTTGTATATTATACCAggcatta
aaaatattttttaattttcgattTGCTATATTTTTATAACTTACATCAAT
TGTCACTCTTGCACGTCACTCGATtctattataataaaaaatcatattaT
GTTTAATCTACCATAAGATTGAATCACTGAACCCTTGCACTTTTAACTat
cccaaaaaagaaaaagaaccaTTTATGTCAGGTATTGTTTACAGCGTTGT
ACACCTTTTTGTCCAGTTATCATATCCAGGTATTGATTGATATTATAATT
TATTTCaacaaacttttgtttttgggATAGGAAAAGTAGAACACAATTTT
TGTAATCAATTTCACAAAGATAAAAGTATGCTGATTTCGGTTTTAAATTG
TGTAAATGTCTGTACATTGAaccattgtttttcttttgtagcTGCTAAT

Coding sequence (CDS) from alignment at sc0000482:19285..22133

>TCONS_00024255 ID=TCONS_00024255|Name=TCONS_00024255|organism=Clytia hemisphaerica|type=CDS|length=1554bp|location=Sequence derived from alignment at sc0000482:19285..22133 (Clytia hemisphaerica)
atgaaattctttttttttatagtgaaaacaaaaatgattttagaaatatt
ttgtgcaTTGTTATGCTTATACGTTGGAGTTAAGATTTTATGGTATTGGG
TTGTTCATCCTTGGGAACATTTTCCAAAAGTACCTATGTGCTATATTCCT
TTTTTTGGGCATATCCTTGGATTGATCAATTTTGATGAGGTAGATTTTCA
CGAAGCACACCTCAAATggttgaataaaaatgaaagtgtgATTTTATGGG
TTTTCAATCGTGGTATTGTTTTCACCAAAGATAGGAATGctattgaaaaa
cttttgattaGTAATCAAGAGATTACTAAATCAGATAATTATTGGATTTT
CCATGATGTTATTGGTCATAACAGCTTGTTTACTGGGACAGGTGATTCAT
GGCGAAAACGAAGAAAGATGTTGACACCTTCATTTCATTTTAATATATTG
TCAGATTTTCTTGTTGTCATGGAGAAACACACCAAACAACTTGTCTCGCA
CTTAAAAGATGGAAATTTGGAGGGTGAAAAGACATTTAATGCAATTCAAG
AGATGAAAAGTCATTCATTTGGTATTTTACTGGAAACATCAATGGGTATA
CAATGTGGTACTGCAGAAAGCGGTCACGACCAAGCTAAAATCTGGGAAAT
GGCTCAAGGGGTTGATCgaatttttaagcttatgatctGGCGTGACAAGG
TGCCATGGTATCGACCAAAATGGCTATTCCAATGGTTTGAAGATGGCAAA
GAATTCTACTCACGTTTGAATTCTTTTAAACAATTTTCTAAAAGCATGGT
AGAGAAAAGAGTGGAACAGCTTCGAACTGAACAAACAGATTCCAGTAAAA
AACAAGCAATTTTCCTGGATACTTTACTGGTCAATATGAACAATGATGAA
TTCGTTGTTGAAGACATTATGAATGAGACTCACACTTTCTTAATTGCTGG
TTATGATACTGTGGCTACTGAGCTGGTATGGTGCTTATTTATGCTTGGCC
TAAACCAGGATAAGCAAGCCAAAGCATTTGAGGAATGTGCACATGTGAAT
AAGCTTGGGTTATCAGTGCATGAGACTGTCAAAGAACTCAAGTACCTTGA
ATGTGTTGTTAAAGAGGTAATGCGATTACATCCATCAGCACCAGCATTTA
GCCGAGTCTTGCAAGAAGATATGGTTGTTAACTCAACCAGATATCCAAAA
GGTACAACATTTTGTATGTGTATCTTGGCACTGCAGCAAGATCCTCGATA
TTGGGATGAACCACTCAAATTTAAGCCAGAGAGATTTCTGACtgaggaaa
atgaaaacaaggacCGGAACCCTTTCACTTATATACCATTTTCAGCCGGA
CCGAGGAATTGTATTGGTCAAAAATTTGCCATGATGGAAATGAAGATCAC
GTTATATCacattttgttgaatttcgaaGTGGTTTCTTTGCAGAAAGAAG
AGGAAATTAAAGCCACTTCTGGTATTTTTCATATTCCAGCCAATAAGGAG
GGTTTACTTGTACAATTCAAACCTagacacacccctgtgtcagtgTCCCG
GTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013615XLOC_013615Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024255-proteinTCONS_00024255-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024255-exon-sc0000482-1491911889:19285..22133TCONS_00024255-exon-sc0000482-1491911889:19285..22133Clytia hemisphaericaexon
TCONS_00024255-exon-sc0000482-1510915933:19285..22133TCONS_00024255-exon-sc0000482-1510915933:19285..22133Clytia hemisphaericaexon
TCONS_00024255-exon-sc0000482-1575043694:19285..22133TCONS_00024255-exon-sc0000482-1575043694:19285..22133Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000482supercontigsc0000482:19285..22133 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.73665	5.76755	3.72189	3.16255	6.98387	6.0572	5.2313	6.25171	4.19835	4.30221	4.5471	3.27044	3.83409	4.06126	4.16806	4.3823	4.31449	4.16491	2.85077	3.49675	4.00153	3.3958	13.0551	11.4951	7.32953	8.49563	4.53463	2.90041	8.55341	9.0207
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002403Cyt_P450_E_grp-IV
IPR001128Cyt_P450
IPR017972Cyt_P450_CS
Vocabulary: Molecular Function
TermDefinition
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037heme binding
GO:0004497monooxygenase activity
GO:0005506iron ion binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
[Close]
BLAST of TCONS_00024255 vs. Swiss-Prot (Human)
Match: CP4V2 (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 4.637e-74
Identity = 177/493 (35.90%), Postives = 257/493 (52.13%), Query Frame = -2 
Query: 1229 FPKVPMCYIPFFGHILGLINFDEVDFHEAHLKWLNKNESVIL---WVFNRGIVFTKDRNAIEKLLISNQEITKSDNYWIFHDVIGHNSLFTGTGDSWRKRRKMLTPSFHFNILSDFLVVMEKHTKQLVSHLKDGNLEGEKTFNAIQEMKSHSFGILLETSMGIQCGTAESGHDQAKIWEMAQGVDRIFKLMIWRDKVPWYRPKWLFQW---FEDGKEFYSRLNSFKQFSKSMVEKRVEQLRTEQ---------TDSSKKQAIFLDTLLVNMNNDE---FVVEDIMNETHTFLIAGYDTVATELVWCLFMLGLNQDKQAKAFEECAHVNKLGLSVH----ETVKELKYLECVVKEVMRLHPSAPAFSRVLQEDMVVNSTRYPKGTTFCMCILALQQDPRYWDEPLKFKPERFLTEENENKDRNPFTYIPFSAGPRNCIGQKFAMMEMKITLYHILLNFEVVSLQKEEEIKATSGIFHIPANKEGLLVQFKPRHT 2641
             P V   Y P  GH L L+  D  +F +  +++  +   + L   WV    +V   +   +E +L S+++I KS  Y      +G   L T TG+ WR RRKMLTP+FHF IL DFL +M +    LV  L+      ++ FN    +   +  I+ ET+MG   G A+S  D     E  + V R+ +++  R K+PW    WL  W   F++G E    L     F+ S++ +R  ++   +           S  K+  FLD LL+++ +DE      EDI  E  TF+  G+DT A  + W L++LG N + Q K   E   V   G S      E +K+L+YLECV+KE +RL PS P F+R + ED  V   R  KGT   +   AL +DPRY+  P +F+PERF  E  +   R+P+ Y+PFSAGPRNCIGQKFA+ME K  L  IL +F + S QK EE+     +   P+N  G+ ++ K R+ 
Sbjct:   50 IPTVARAY-PLVGHAL-LMKPDGREFFQQIIEYTEEYRHMPLLKLWVGPVPMVALYNAENVEVILTSSKQIDKSSMYKFLEPWLGL-GLLTSTGNKWRSRRKMLTPTFHFTILEDFLDIMNEQANILVKKLEKHI--NQEAFNCFFYITLCALDIICETAMGKNIG-AQSNDDS----EYVRAVYRMSEMIFRRIKMPWL---WLDLWYLMFKEGWEHKKSLQILHTFTNSVIAERANEMNANEDCRGDGRGSAPSKNKRRAFLD-LLLSVTDDEGNRLSHEDIREEVDTFMFEGHDTTAAAINWSLYLLGSNPEVQKKVDHELDDV--FGKSDRPATVEDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERFFPENAQG--RHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHFWIESNQKREELGLEGQLILRPSN--GIWIKLKRRNA 522
The following BLAST results are available for this feature:
BLAST of TCONS_00024255 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP4V24.637e-7435.90Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1... [more]
back to top