TCONS_00024225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024225
Unique NameTCONS_00024225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length982

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024225 ID=TCONS_00024225|Name=TCONS_00024225|organism=Clytia hemisphaerica|type=transcript|length=982bp
ATTCATATCTTAGTAGTGGAGTAAAATCAAGCATGCTTGTTCTCTGAATT
GATTATTCAAAAAGCCTCATTAATTTAtctacaaaattgatttttactcA
AGTGTTTCATTAAATAAATTGTTATCAACTGTTCAATCCGCGAGAATGAA
CGAAGCAAGTGTTATAAAACGTGTCATTCCCATCTCAGTGAAAGTACTTT
ATCAGCATTTAAGCGTATGCGAGGTCGCGGATAAAGTAATTGTCTCACCG
CAGTTCGAATACCCTTCTTGCTGAATTTGTTAGACAAGGTGCTTTTGTTT
CCTTCCCATTCAAGTACTTCGTCGACATCCGTAAAAAGATGTTCTCCGTT
GTACCAAAAAGAAATGAGAGCTCCCAACGACCACATATCTGCGCTGAATG
TGTATTCATTGCCTTCGATCACCTCGGGGGCTGCGTAAGTGTAACTGCGT
GCGTAAAAGATCTGCGTACCTGCGTAATATCCCTGCTGGGTATCTCCGTC
GACAAGCTTTGAGATTCCAAAATCGGAGAGTTTGAAAGTCGGAAGTTCGC
TCCATTCGTTGGAAAAGCACAAAATATTGTCAGGTTTAAGATCTCGATGC
ATAATTCTGTTTTCATGAAGGTATTCCAATGGGGATGCCAACTGCTCCAT
AACCTCCCATATCACATCTTcttttatcagctttttttctgTCTTGCCTG
ACAGTTTGGTGCGAAAGTCAAGCATTGTGCCTTTATTTGCGTATTCCATA
ACAATGGCTAATTCGTCATCATCAATGAAATGTTCGAAGTATTGAACAAT
GTTACCATGTTCCACATCTTgaagaatttcaatttcttgttTTGCACTTT
CAGTGATGTGGCTGATTTCTTTGACTGCGTAATATTCACCATATTGCTTC
ACTTTGTATACAACACCAAAATATCCCTCGCCGagtttttcaatcatttc
aTATTCACTTCGCCATCCTTCATCCATCTTTG
Run BLAST on NCBI

protein sequence of TCONS_00024225-protein

>TCONS_00024225-protein ID=TCONS_00024225-protein|Name=TCONS_00024225-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
KMDEGWRSEYEMIEKLGEGYFGVVYKVKQYGEYYAVKEISHITESAKQEI
EILQDVEHGNIVQYFEHFIDDDELAIVMEYANKGTMLDFRTKLSGKTEKK
LIKEDVIWEVMEQLASPLEYLHENRIMHRDLKPDNILCFSNEWSELPTFK
LSDFGISKLVDGDTQQGYYAGTQIFYARSYTYAAPEVIEGNEYTFSADMW
SLGALISFWYNGEHLFTDVDEVLEWEGNKSTLSNKFSKKGIRTAVRQLLY
PRPRIRLNADKVLSLRWE
Run BLAST on NCBI

transcript from alignment at sc0000478:176884..177865

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024225 ID=TCONS_00024225|Name=TCONS_00024225|organism=Clytia hemisphaerica|type=transcript|length=982bp|location=Sequence derived from alignment at sc0000478:176884..177865 (Clytia hemisphaerica)
CAAAGATGGATGAAGGATGGCGAAGTGAATAtgaaatgattgaaaaactC
GGCGAGGGATATTTTGGTGTTGTATACAAAGTGAAGCAATATGGTGAATA
TTACGCAGTCAAAGAAATCAGCCACATCACTGAAAGTGCAAaacaagaaa
ttgaaattcttcAAGATGTGGAACATGGTAACATTGTTCAATACTTCGAA
CATTTCATTGATGATGACGAATTAGCCATTGTTATGGAATACGCAAATAA
AGGCACAATGCTTGACTTTCGCACCAAACTGTCAGGCAAGAcagaaaaaa
agctgataaaagAAGATGTGATATGGGAGGTTATGGAGCAGTTGGCATCC
CCATTGGAATACCTTCATGAAAACAGAATTATGCATCGAGATCTTAAACC
TGACAATATTTTGTGCTTTTCCAACGAATGGAGCGAACTTCCGACTTTCA
AACTCTCCGATTTTGGAATCTCAAAGCTTGTCGACGGAGATACCCAGCAG
GGATATTACGCAGGTACGCAGATCTTTTACGCACGCAGTTACACTTACGC
AGCCCCCGAGGTGATCGAAGGCAATGAATACACATTCAGCGCAGATATGT
GGTCGTTGGGAGCTCTCATTTCTTTTTGGTACAACGGAGAACATCTTTTT
ACGGATGTCGACGAAGTACTTGAATGGGAAGGAAACAAAAGCACCTTGTC
TAACAAATTCAGCAAGAAGGGTATTCGAACTGCGGTGAGACAATTACTTT
ATCCGCGACCTCGCATACGCTTAAATGCTGATAAAGTACTTTCACTGAGA
TGGGAATGACACGTTTTATAACACTTGCTTCGTTCATTCTCGCGGATTGA
ACAGTTGATAACAATTTATTTAATGAAACACTTgagtaaaaatcaatttt
gtagaTAAATTAATGAGGCTTTTTGAATAATCAATTCAGAGAACAAGCAT
GCTTGATTTTACTCCACTACTAAGATATGAAT

Coding sequence (CDS) from alignment at sc0000478:176884..177865

>TCONS_00024225 ID=TCONS_00024225|Name=TCONS_00024225|organism=Clytia hemisphaerica|type=CDS|length=807bp|location=Sequence derived from alignment at sc0000478:176884..177865 (Clytia hemisphaerica)
AAGATGGATGAAGGATGGCGAAGTGAATAtgaaatgattgaaaaactCGG
CGAGGGATATTTTGGTGTTGTATACAAAGTGAAGCAATATGGTGAATATT
ACGCAGTCAAAGAAATCAGCCACATCACTGAAAGTGCAAaacaagaaatt
gaaattcttcAAGATGTGGAACATGGTAACATTGTTCAATACTTCGAACA
TTTCATTGATGATGACGAATTAGCCATTGTTATGGAATACGCAAATAAAG
GCACAATGCTTGACTTTCGCACCAAACTGTCAGGCAAGAcagaaaaaaag
ctgataaaagAAGATGTGATATGGGAGGTTATGGAGCAGTTGGCATCCCC
ATTGGAATACCTTCATGAAAACAGAATTATGCATCGAGATCTTAAACCTG
ACAATATTTTGTGCTTTTCCAACGAATGGAGCGAACTTCCGACTTTCAAA
CTCTCCGATTTTGGAATCTCAAAGCTTGTCGACGGAGATACCCAGCAGGG
ATATTACGCAGGTACGCAGATCTTTTACGCACGCAGTTACACTTACGCAG
CCCCCGAGGTGATCGAAGGCAATGAATACACATTCAGCGCAGATATGTGG
TCGTTGGGAGCTCTCATTTCTTTTTGGTACAACGGAGAACATCTTTTTAC
GGATGTCGACGAAGTACTTGAATGGGAAGGAAACAAAAGCACCTTGTCTA
ACAAATTCAGCAAGAAGGGTATTCGAACTGCGGTGAGACAATTACTTTAT
CCGCGACCTCGCATACGCTTAAATGCTGATAAAGTACTTTCACTGAGATG
GGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013596XLOC_013596Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024225-proteinTCONS_00024225-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024225-exon-sc0000478-1491911889:176884..177865TCONS_00024225-exon-sc0000478-1491911889:176884..177865Clytia hemisphaericaexon
TCONS_00024225-exon-sc0000478-1510915933:176884..177865TCONS_00024225-exon-sc0000478-1510915933:176884..177865Clytia hemisphaericaexon
TCONS_00024225-exon-sc0000478-1575043694:176884..177865TCONS_00024225-exon-sc0000478-1575043694:176884..177865Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000478supercontigsc0000478:176884..177865 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0458962	0.044756	0.155898	0.101681	0.247574	0.293455	0.118014	0.165724	0.232055	0.335344	0.790483	0.213966	10.4698	8.59059	64.111	73.891	14.3329	16.7743	1.51245	1.42951	0	0.194801	1.42084	1.48312	0.936257	1.93504	0.188798	0.873126	2.54706	2.95836
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR017441Protein_kinase_ATP_BS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
[Close]
BLAST of TCONS_00024225 vs. Swiss-Prot (Human)
Match: NEK6 (Serine/threonine-protein kinase Nek6 OS=Homo sapiens GN=NEK6 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.009e-28
Identity = 74/267 (27.72%), Postives = 130/267 (48.69%), Query Frame = -3 
Query:  213 SEYEMIEKLGEGYFGVVYKVKQY--GEYYAVKEI-------SHITESAKQEIEILQDVEHGNIVQYFEHFIDDDELAIVMEYANKGTMLDFRTKLSGKTEKKLIKEDVIWEVMEQLASPLEYLHENRIMHRDLKPDNILCFSNEWSELPTFKLSDFGISKLVDGDTQQGY-YAGTQIFYARSYTYAAPEVIEGNEYTFSADMWSLGALI--------SFWYNGEHLFTDVDEVLEWEGNKSTLSNKFSKKGIRTAVRQLLYPRPRIR 959
            +++++ +K+G G F  VYK       +  A+K++       +   +   +EI +L+ + H NI++Y + FI+D+EL IV+E A+ G +         K +K+LI E  +W+   QL S +E++H  R+MHRD+KP N+   +         KL D G+ +    +T   +   GT         Y +PE I  N Y F +D+WSLG L+         F+ +  +LF+   ++ + +     L  +   + +R  V   + P P  R
Sbjct:   43 ADFQIEKKIGRGQFSEVYKATCLLDRKTVALKKVQIFEMMDAKARQDCVKEIGLLKQLNHPNIIKYLDSFIEDNELNIVLELADAGDLSQMIKYF--KKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATG-----VVKLGDLGLGRFFSSETTAAHSLVGTPY-------YMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCD--YPPLPGEHYSEKLRELVSMCICPDPHQR 293
The following BLAST results are available for this feature:
BLAST of TCONS_00024225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NEK63.009e-2827.72Serine/threonine-protein kinase Nek6 OS=Homo sapie... [more]
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