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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024191 ID=TCONS_00024191|Name=TCONS_00024191|organism=Clytia hemisphaerica|type=transcript|length=1448bp
TGAAACCAATCACTGATATCCTGACCCTTCTGTTTATTAAAGGGTCTCGG
AAGTACTTCCCTAAACTTCAGTTTGTAAGCTACAGTGAGGAAATTAGTTT
GTTTGTCTTCTTTATAACTTTAGATTGAGTTGGTGTGGAATATGAGGAAC
TGATCAACCTCTTGAAGGAGGTCATATCGAATTACAAGCATGAAATGATG
TTAAATTTCGATATTTCCATTTTAGTGTAATGAACTAACCAGGAAAAAAT
ACACCAAGACAAGATGTTCAAGTTTAGTTTGAGAAGTTCATCATCTTCAA
ACAATACCAACAAAAACACAGACGAAGGACTTAGTAAACAACAAGTTTCT
ACTCTTATGCGTCACCTCAGTACAGCCACATCTATTTGCATGGTCCAACC
ACCCGGTGATGCTGACTTCaacaaaggaaaaaaagaatttcgtAGAAGTA
TGAGAAAAAGAGAAGATGTTGATTTATACAAACTTCGAAAACAACGCATG
TTAAAACAAAAagaggaagaagaaaaagaagatgaagaacGATTATCGGA
CAGTAGTTCCAAACATTCGGACAGAGGCGCTGGTGATTGTTGTGATAATC
TGAGACGAATTTCAAGAATTATCGACGCCCCTCAATCTATCATGGAATAT
AAAGACTTGCTCAAATCTATCTCTttacaattattttcaaaatcaagaac
aagtttagaTTCTGCACGTTCAAACACTAAATATTCAACCCTTGGTAAAG
AGGAGGAAGCGTTTAATAATATTGATCGAACGGACAGTATTGATGATCGT
ACCACGACCTTTGTATTGACCCAAAAGTTCATCGGATGGAAAGTGTGAAA
AATGTAGTAGAGAATTAAAAGAGAatggtttttgaaattttgagaatcGG
TTGCACAGTGAAGTGACTGTGAAATTGTTTGGAGAGTTAAAGGAAGACTA
GCAAATATTTTATTACTCTTATCAAAGTGGTGTAATAGAAAACAATTTGA
CCATTTTATTAAGTCTTAAAACTTAGGAGTGGACCATATAAATCGGTTAC
TTACATCTCAAATTAAAACTCCACCCCTCTAATTAAACTTATGGCTTTTG
GGGACAGAGGAATCAGATAGTTTTCATTCTAGTCCACTCTCACCTATGAT
CAACAATCAGCTCAGCAAAGTCTCCAAAATATTAGCTAGGAGATACGCAT
TAAAGAtctgaaaaagaattttaaaatgttttcaatacTCATCATGATTC
ATTGTTGACATCGACGCCAATAGCTttgtttaaaaagttattttttcaaa
attttatcattttacattatcttaaaatttttattggtatataataattt
tgttttataaaaagtttgtttatattGTTTATATGTAGAATAAATTTAGT
CCAATCATTATTGATTTGCCTTTTGTTTGGTAAATTCATTTcaaccaa Run BLAST on NCBI protein sequence of Putative cnidarian restricted protein >TCONS_00024191-protein ID=TCONS_00024191-protein|Name=Putative cnidarian restricted protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MFKFSLRSSSSSNNTNKNTDEGLSKQQVSTLMRHLSTATSICMVQPPGDA
DFNKGKKEFRRSMRKREDVDLYKLRKQRMLKQKEEEEKEDEERLSDSSSK
HSDRGAGDCCDNLRRISRIIDAPQSIMEYKDLLKSISLQLFSKSRTSLDS
ARSNTKYSTLGKEEEAFNNIDRTDSIDDRTTTFVLTQKFIGWKV Run BLAST on NCBI transcript from alignment at sc0000478:82363..84075- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024191 ID=TCONS_00024191|Name=TCONS_00024191|organism=Clytia hemisphaerica|type=transcript|length=1713bp|location=Sequence derived from alignment at sc0000478:82363..84075- (Clytia hemisphaerica)
TGAAACCAATCACTGATATCCTGACCCTTCTGTTTATTAAAGGGTCTCGG
AAGTACTTCCCTAAACTTCAGTTTGTAAGCTACAGTGAGGAAATTAGTTT
GTTTGTCTTCTTTATAACTTTAGATTGAGTTGGTGTGGAATATGAGGAAC
TGATCAACCTCTTGAAGGAGGTCATATCGAATTACAAGCATGAAATGATG
TTAAATTTCGATATTTCCATTTTAGTGTAATGAACTAACCAGGAAAAAAT
ACACCAAGACAAGATGTTCAAGTTTAGTTTGAGAAGTTCATCATCTTCAA
ACAATACCAACAAAAACACAGACGAAGGACTTAGTAAACAACAAGTTTCT
ACTCTTATGGTAAGAAATTTCAACATCTCATTATACGTTTTTTTTTTAAT
TGGGTATAAAGCCTAAAATAGCCTGAACTTTGCCCTAAAATGAGAACAAT
ATAGAAATAATTTGAGACTGACAGTACCAAAAAAATAGCACCTGAGATTC
ATCAGAAATTTACTGGTTCTTTTTAATTCAATTAATTCATTTGGCGTTGA
CAAAAAATCTCATCTCTTGTAAAACTAAAATTAGGATTTAATCTAGAATT
CAAACCTCCGTCATCTCTTTTCAGCGTCACCTCAGTACAGCCACATCTAT
TTGCATGGTCCAACCACCCGGTGATGCTGACTTCAACAAAGGAAAAAAAG
AATTTCGTAGAAGTATGAGAAAAAGAGAAGATGTTGATTTATACAAACTT
CGAAAACAACGCATGTTAAAACAAAAAGAGGAAGAAGAAAAAGAAGATGA
AGAACGATTATCGGACAGTAGTTCCAAACATTCGGACAGAGGCGCTGGTG
ATTGTTGTGATAATCTGAGACGAATTTCAAGAATTATCGACGCCCCTCAA
TCTATCATGGAATATAAAGACTTGCTCAAATCTATCTCTTTACAATTATT
TTCAAAATCAAGAACAAGTTTAGATTCTGCACGTTCAAACACTAAATATT
CAACCCTTGGTAAAGAGGAGGAAGCGTTTAATAATATTGATCGAACGGAC
AGTATTGATGATCGTACCACGACCTTTGTATTGACCCAAAAGTTCATCGG
ATGGAAAGTGTGAAAAATGTAGTAGAGAATTAAAAGAGAATGGTTTTTGA
AATTTTGAGAATCGGTTGCACAGTGAAGTGACTGTGAAATTGTTTGGAGA
GTTAAAGGAAGACTAGCAAATATTTTATTACTCTTATCAAAGTGGTGTAA
TAGAAAACAATTTGACCATTTTATTAAGTCTTAAAACTTAGGAGTGGACC
ATATAAATCGGTTACTTACATCTCAAATTAAAACTCCACCCCTCTAATTA
AACTTATGGCTTTTGGGGACAGAGGAATCAGATAGTTTTCATTCTAGTCC
ACTCTCACCTATGATCAACAATCAGCTCAGCAAAGTCTCCAAAATATTAG
CTAGGAGATACGCATTAAAGATCTGAAAAAGAATTTTAAAATGTTTTCAA
TACTCATCATGATTCATTGTTGACATCGACGCCAATAGCTTTGTTTAAAA
AGTTATTTTTTCAAAATTTTATCATTTTACATTATCTTAAAATTTTTATT
GGTATATAATAATTTTGTTTTATAAAAAGTTTGTTTATATTGTTTATATG
TAGAATAAATTTAGTCCAATCATTATTGATTTGCCTTTTGTTTGGTAAAT
TCATTTCAACCAA Coding sequence (CDS) from alignment at sc0000478:82363..84075- >TCONS_00024191 ID=TCONS_00024191|Name=TCONS_00024191|organism=Clytia hemisphaerica|type=CDS|length=1170bp|location=Sequence derived from alignment at sc0000478:82363..84075- (Clytia hemisphaerica)
CGTCACCTCAGTACAGCCACATCTATTTGCATGGTCCAACCACCCGGTGA
TGCTGACTTCAACAAAGGAAAAAAAGAATTTCGTAGAAGTATGAGAAAAA
GAGAAGATGTTGATTTATACAAACTTCGAAAACAACGCATGTTAAAACAA
AAAGAGGAAGAAGAAAAAGAAGATGAAGAACGATTATCGGACAGTAGTTC
CAAACATTCGGACAGAGGCGCTGGTGATTGTTGTGATAATCTGAGACGAA
TTTCAAGAATTATCGACGCCCCTCAATCTATCATGGAATATAAAGACTTG
CTCAAATCTATCTCTTTACAATTATTTTCAAAATCAAGAACAAGTTTAGA
TTCTGCACGTTCAAACACTAAATATTCAACCCTTGGTAAAGAGGAGGAAG
CGTTTAATAATATTGATCGAACGGACAGTATTGATGATCGTACCACGACC
TTTGTATTGACCCAAAAGTTCATCGGATGGAAAGTGTGAATGTTCAAGTT
TAGTTTGAGAAGTTCATCATCTTCAAACAATACCAACAAAAACACAGACG
AAGGACTTAGTAAACAACAAGTTTCTACTCTTATGCGTCACCTCAGTACA
GCCACATCTATTTGCATGGTCCAACCACCCGGTGATGCTGACTTCAACAA
AGGAAAAAAAGAATTTCGTAGAAGTATGAGAAAAAGAGAAGATGTTGATT
TATACAAACTTCGAAAACAACGCATGTTAAAACAAAAAGAGGAAGAAGAA
AAAGAAGATGAAGAACGATTATCGGACAGTAGTTCCAAACATTCGGACAG
AGGCGCTGGTGATTGTTGTGATAATCTGAGACGAATTTCAAGAATTATCG
ACGCCCCTCAATCTATCATGGAATATAAAGACTTGCTCAAATCTATCTCT
TTACAATTATTTTCAAAATCAAGAACAAGTTTAGATTCTGCACGTTCAAA
CACTAAATATTCAACCCTTGGTAAAGAGGAGGAAGCGTTTAATAATATTG
ATCGAACGGACAGTATTGATGATCGTACCACGACCTTTGTATTGACCCAA
AAGTTCATCGGATGGAAAGTGTGAATGTTCAAGTTTAGTTTGAGAAGTTC
ATCATCTTCAAACAATACCAACAAAAACACAGACGAAGGACTTAGTAAAC
AACAAGTTTCTACTCTTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024191-exon-sc0000478-1575043694:83717..84075 | TCONS_00024191-exon-sc0000478-1575043694:83717..84075 | Clytia hemisphaerica | exon |
| TCONS_00024191-exon-sc0000478-1575043694:82363..83451 | TCONS_00024191-exon-sc0000478-1575043694:82363..83451 | Clytia hemisphaerica | exon |
| TCONS_00024191-exon-sc0000478-1510915933:83717..84075 | TCONS_00024191-exon-sc0000478-1510915933:83717..84075 | Clytia hemisphaerica | exon |
| TCONS_00024191-exon-sc0000478-1510915933:82363..83451 | TCONS_00024191-exon-sc0000478-1510915933:82363..83451 | Clytia hemisphaerica | exon |
| TCONS_00024191-exon-sc0000478-1491911889:83717..84075 | TCONS_00024191-exon-sc0000478-1491911889:83717..84075 | Clytia hemisphaerica | exon |
| TCONS_00024191-exon-sc0000478-1491911889:82363..83451 | TCONS_00024191-exon-sc0000478-1491911889:82363..83451 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000478 | supercontig | sc0000478:82363..84075 - |
Blast
The following BLAST results are available for this feature:
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