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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024182 ID=TCONS_00024182|Name=TCONS_00024182|organism=Clytia hemisphaerica|type=transcript|length=1960bp
AACAAAATCCTTTCGTTAAATTACTAGATAAATTAACAAATATGAAACAT
ATACAATGGCTGGCGCCAGTACAAGTATCCATTTAcatcaaaaacaactt
tttcgTGTCATTTCGACAGGACAATACACTCTACACCAACTAGTAAATTA
TTTCGCTTTAACTGTTGAACCAAATCCGGCTAATGATGGAGGCATAGCTT
TGAGCAAAATTTTTACTAAGAGAAAAGACAAGgtgaaaaatttctcaaac
atTTCCAATGGGGCTATCAAAGTGATATATATCGGTGACCGCGCAAACGG
TATTTTCCAgccaaaaatcaacattttagTGTTGGACACCAATCTCCTAG
TTCAGATTCTCAGAGGTATCGAAGATTTTCCAACATCCAACACTTATTTT
CGTGCTGGTATTTCTTGTAAAAACACTTCCAGCCATTTGAACAAATGTTG
TCAAGGATGTAACCATGAGTGTATTTATTGTGGTAAAGACGAATGCAAGA
AACAATGCCGCTGTAGTCAAGAGAAAAGAAATTGTGGAAATCACCCatgc
aaaatttgtaaatcAACGAGATTCGACTGCAAGAGCAACAAATTCATCTG
CTGTCAAAAATGTAAAACTTGCCTACACTGTCTTTTGGCACGTTATAGAT
TGACTCATTGGCACCAACTTTTCAAACATTTAGTCGATGGGAGAATTACT
GGTATTTGCGAATTTCGAGAATTGAGGTTTTCCATGTCTATTGTGGCTAC
CTTTCGGAACATAACCATGCACCTTACGTCGGCTGAATGCGATCAAATGG
ACACTGGAACCTTTCAAGATCCAAATGTGCCATGGAAATCGTGGCTAGAC
ATTCGAGATATTATTTGGTATGCAGTGAAATTCATGATAAACTTTTTAGC
AAAACCTCTTCCAAACCCAACGGCAAGTGCTCCACCGTACCCATCGTTGA
GCATTCCTCCGAACCCAGTTATTACAAATTATGAAAAGGAAGATCTTTTG
CAACTTTTACGCTCTGTCTACATGGCAAGCAAACATGACGATCTCCCCAT
GTACAACAACTTGCAACTAGAGCAATTTTCTTCCAACGAAAAACATCTAG
TCAGTTTGCGCAAGGCAGTAGATGATTGCAGGGTTGCAGTATCTGACAAa
cccttaaaaattgaaatccatTTTCGGTTTTCGAAAAAGATGaaagattt
tgatttgaaatgcaaaGAAGCTGCAAATATTAACcaaatctttaaagaaa
catTACAAATTCATTTTGCTAAAGAATTCCCACACCAACCCAATGCATTT
AGATCTGCACTTGTTCACGTCGACAATGTAACAAAACCAAGTAAAGAATC
AAAAACAATCCCGTTAAAATTTGAGATTACATCATCAGAAATACCGTTGG
ATCAATACCGATATCAAGATGATCCATTGTCTGAGGCTCTTTGGAAAGAT
ATTGAGAAAGAGCTCTTGGACACCAAGCTACCGATCAAAAAAGTATCGCT
CAAAGGCTGGGAAAAAGGCTCTATTATCATTCATCTTTGCTTAGTCAGAG
AGGGTGACTGTTACTGGTCCGAGGAAGAAATATCGAATGTTGATAAACTG
TTGGTATCGTTTTCGCAAATGGTTGAAAAGATAATGCCGCGTACACGATG
TAAATGTCAGCGACTGCAAGAGCATCATTGGATGACTGACGAAGCATCTA
TCGGTGTGGCTACATTTTGGGTCAATACCGACGAAGAGCATAAAGAGTTA
TTAAAAAAGGATGAAGATAAAGTTGTCGAAAAACTATCACTCATTTTAGA
TGGACAGGAAAATAATGGTGTGTATATTGTACCCATCAAACCGAAATCAA
TTGTGGAGGATATTTCACTTGTTTCGGTAGATCAGGAACCAATCTGTCAA
CATCCCATTGATAAAAACGTTCGAGAAAATAACACGGGTGAAAAGACAGA
ACCAGCAAAA Run BLAST on NCBI transcript from alignment at sc0000478:187237..190123+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024182 ID=TCONS_00024182|Name=TCONS_00024182|organism=Clytia hemisphaerica|type=transcript|length=2887bp|location=Sequence derived from alignment at sc0000478:187237..190123+ (Clytia hemisphaerica)
AACAAAATCCTTTCGTTAAATTACTAGATAAATTAACAAATATGAAACAT
ATACAATGGCTGGCGCCAGTACAAGTATCCATTTAcatcaaaaacaactt
tttcgTGTCATTTCGACAGGACAATACACTCTACACCAACTAGTAAATTA
TTTCGCTTTAACTGTTGAACCAAATCCGGCTAATGATGGAGGCATAGCTT
TGAGCAAAATTTTTACTAAGAGAAAAGACAAGgtgaaaaatttctcaaac
atTTCCAATGGGGCTATCAAAGTGATATATATCGGTGACCGCGCAAACGG
TATTTTCCAgccaaaaatcaacattttagTGTTGGACACCAATCTCCTAG
TTCAGATTCTCAGAGGTATCGAAGATTTTCCAACATCCAACACTTATTTT
CGTGCTGGTATTTCTTGTAAAAACACTTCCAGCCATTTGAACAAATGTTG
TCAAGGATGTAACCATGAGTGTATTTATTGTGGTAAAGACGAATGCAAGA
AACAATGCCGCTGTAGTCAAGAGAAAAGAAATTGTGGAAATCACCCatgc
aaaatttgtaaatcAACGAGATTCGACTGCAAGAGCAACAAATTCATCTG
CTGTCAAAAATGTAAAACTTGCCTACACTGTCTTTTGGCACGTTATAGAT
TGACTCATTGGCACCAACTTTTCAAACATTTAGTCGATGGGAGAATTACT
GGTATTTGCGAATTTCGAGAATTGAGGTTTTCCATGTCTATTGTGGCTAC
CTTTCGGAACATAACCATGCACCTTACGTCGGCTGAATGCGATCAAATGG
ACACTGGAACCTTTCAAGATCCAAATGTGCCATGGAAATCGTGGCTAGAC
ATTCGAGATATTATTTGGTATGCAGTGAAATTCATGATAAACTTTTTAGC
AAAACCTCTTCCAAACCCAACGGCAAGTGCTCCACCGTACCCATCGTTGA
GCATTCCTCCGAACCCAGTTATTACAAATTATGAAAAGGAAGATCTTTTG
CAACTTTTACGCTCTGTCTACATGGCAAGCAAACATGACGATCTCCCCAT
GTACAACAACTTGCAACTAGAGCAATTTTCTTCCAACGAAAAACATCTAG
TCAGTTTGCGCAAGGCAGTAGATGATTGCAGGGTTGCAGTATCTGACAAa
cccttaaaaattgaaatccatTTTCGGTTTTCGAAAAAGATGaaagattt
tgatttgaaatgcaaaGAAGCTGCAAATATTAACcaaatctttaaagaaa
catTACAAATTCATTTTGCTAAAGAATTCCCACACCAACCCAATGCATTT
AGATCTGCACTTGTTCACGTCGACAATGTAACAAAACCAAGTAAAGAATC
AAAAACAATCCCGTTAAAATTTGAGATTACATCATCAGAAATACCGTTGG
ATCAATACCGATATCAAGATGATCCATTGTCTGAGGCTCTTTGGAAAGAT
ATTGAGAAAGAGCTCTTGGACACCAAGCTACCGATCAAAAAAGTATCGCT
CAAAGGCTGGGAAAAAGGCTCTATTATCATTCATCTTTGCTTAGTCAGAG
AGGGTGACTGTTACTGGTCCGAGGAAGAAATATCGAATGTTGATAAACTG
TTGGTATCGTTTTCGCAAATGGTTGAAAAGATAATGCCGCGTACACGATG
TAAATGTCAGCGACTGCAAGAGCATCATTGGATGACTGACGAAGCATCTA
TCGGTGTGGCTACATTTTGGGTCAATACCGACGAAGAGCATAAAGAGTTA
TTAAAAAAGGATGAAGATAAAGTTGTCGAAAAACTATCACTCATTTTAGA
TGGACAGGAAAATAATGGTGTGTGTAAGTATTGTAATATATTCTCCTAAT
TTAGATTCATAATTTTAATGTCCCCATTGATTGCAGACTTTTAtgtaaag
taagtaagtctgcgacggTAGTAGGAgacgacccgaaggctcctcttttg
atAGATATCTACCCGAAGATAGAAGAGGACACCACTCTTTCTCCccggat
tgctccacttacttTTGATCCTCTCATTAATTGCCGAGAATCgggcagag
aggcatcaagtaccattcaggagaagtctttggtatgatctggccaggga
ttgaacccacgacctaaagtaaaatcctcataatttatgCCAAGTTTTAC
GACTTGTTTACTTAATACCTCAATCTCAAAAACATATTCGACGATCatgg
gaattgaatatctatttaATGAACAGAGAGTtgtaatcttttttcaatta
ttctaaGCCCAGTTTAAATAACGAGTTTTGAGGATTTCACTTTATACAAA
ATTCTGTCCACTTTTTTAGGGACATACTGTATAAACTGCTAAATCCTAAA
acatttcttcaatttctttaaGATATTGTACCCATCAAACCGAAATCAAT
TGTGGAGGATATTTCACTTGTTTCGGTAGATCAGGAACCAATCTGTCAAC
ATCCCATTGGTAAGTACATATAGTTATGGGCAAACCATTAAATAGCATAA
GCCCCTTGACGCCAGTCCTTAACCCGCCACAGCCAAATAGGTGCCTACGA
CGATAAAAGCAATGGGCTcttgcaaaaaaaatatatacccCCACCCTTAT
TTTGAGGAGTTCTTTTTGGAGAAggtgaccccctggatattttttcaatt
ttcaggacccacttattttgattattaaaatttgaagatttggtACTATA
CTACCCATCAAGATCAGGAAACACTCCCACGAAGCTTATCTTTCAGTAAG
CATAATCAACTTGAATATCCAAAACGATTTccaaaatcttgtttttaaac
AAATGATGGCTAAATATCTCTATGCTTCTTTTTCCAGATAAAAACGTTCG
AGAAAATAACACGGGTGAAAAGACAGAACCAGCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024182-exon-sc0000478-1491911889:187237..189059 | TCONS_00024182-exon-sc0000478-1491911889:187237..189059 | Clytia hemisphaerica | exon |
| TCONS_00024182-exon-sc0000478-1510915933:187237..189059 | TCONS_00024182-exon-sc0000478-1510915933:187237..189059 | Clytia hemisphaerica | exon |
| TCONS_00024182-exon-sc0000478-1575043694:187237..189059 | TCONS_00024182-exon-sc0000478-1575043694:187237..189059 | Clytia hemisphaerica | exon |
| TCONS_00024182-exon-sc0000478-1491911889:189609..189695 | TCONS_00024182-exon-sc0000478-1491911889:189609..189695 | Clytia hemisphaerica | exon |
| TCONS_00024182-exon-sc0000478-1510915933:189609..189695 | TCONS_00024182-exon-sc0000478-1510915933:189609..189695 | Clytia hemisphaerica | exon |
| TCONS_00024182-exon-sc0000478-1575043694:189609..189695 | TCONS_00024182-exon-sc0000478-1575043694:189609..189695 | Clytia hemisphaerica | exon |
| TCONS_00024182-exon-sc0000478-1491911889:190074..190123 | TCONS_00024182-exon-sc0000478-1491911889:190074..190123 | Clytia hemisphaerica | exon |
| TCONS_00024182-exon-sc0000478-1510915933:190074..190123 | TCONS_00024182-exon-sc0000478-1510915933:190074..190123 | Clytia hemisphaerica | exon |
| TCONS_00024182-exon-sc0000478-1575043694:190074..190123 | TCONS_00024182-exon-sc0000478-1575043694:190074..190123 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000478 | supercontig | sc0000478:187237..190123 + |
Blast
The following BLAST results are available for this feature:
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