TCONS_00024164 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024164
Unique NameTCONS_00024164
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024164 ID=TCONS_00024164|Name=TCONS_00024164|organism=Clytia hemisphaerica|type=transcript|length=312bp
AACAACTTCttttaaagatgtttttttattgTGTACAGAGTCTGTTTTAA
AAACCTTGCTATGCATCTTTGATATGATTGCTTTATTACAATGCTTATGC
AAAAAAACTCAATTATGGATGTTGGAAGGGTTTTAAGAAGCTCAGAATTA
TATCATTTCAGGATATGCGAGGGCCTGTTTGTTTGGTCttgatttttagg
aaatacacaatattttcatttttatacaatttttatttcattttgtgGAA
ATAAGTGGCACTTTTTTATGTCTCTTTGATGAAATGTATTATAGCTTTGT
GTATATTGAAAc
Run BLAST on NCBI

transcript from alignment at sc0000476:195644..195955

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024164 ID=TCONS_00024164|Name=TCONS_00024164|organism=Clytia hemisphaerica|type=transcript|length=312bp|location=Sequence derived from alignment at sc0000476:195644..195955 (Clytia hemisphaerica)
gTTTCAATATACACAAAGCTATAATACATTTCATCAAAGAGACATAAAAA
AGTGCCACTTATTTCcacaaaatgaaataaaaattgtataaaaatgaaaa
tattgtgtatttcctaaaaatcaaGACCAAACAAACAGGCCCTCGCATAT
CCTGAAATGATATAATTCTGAGCTTCTTAAAACCCTTCCAACATCCATAA
TTGAGTTTTTTTGCATAAGCATTGTAATAAAGCAATCATATCAAAGATGC
ATAGCAAGGTTTTTAAAACAGACTCTGTACAcaataaaaaaacatcttta
aaaGAAGTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013563XLOC_013563Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024164-exon-sc0000476-1491911889:195644..195955TCONS_00024164-exon-sc0000476-1491911889:195644..195955Clytia hemisphaericaexon
TCONS_00024164-exon-sc0000476-1510915933:195644..195955TCONS_00024164-exon-sc0000476-1510915933:195644..195955Clytia hemisphaericaexon
TCONS_00024164-exon-sc0000476-1575043694:195644..195955TCONS_00024164-exon-sc0000476-1575043694:195644..195955Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000476supercontigsc0000476:195644..195955 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.389865	0	1.39303	1.46773	0.885374	1.24332	2.03111	0.718815	0.34885	0.45864	1.14501	0.23782	0.586561	0	1.03394	0.529878	0.732055	0.383022	0.66583	1.94861	1.1844	0.35893	1.10907	0.659877	3.30499	0.503882	0.764353	1.55751
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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