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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024100 ID=TCONS_00024100|Name=TCONS_00024100|organism=Clytia hemisphaerica|type=transcript|length=1615bpRun BLAST on NCBI protein sequence of TCONS_00024100-protein >TCONS_00024100-protein ID=TCONS_00024100-protein|Name=TCONS_00024100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=491bp MKKLEILCLIIFCCFFELVFAKGSKGKQSTLRKTGPKSRGQGDRHDEVEVRun BLAST on NCBI transcript from alignment at sc0000474:199134..206175- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024100 ID=TCONS_00024100|Name=TCONS_00024100|organism=Clytia hemisphaerica|type=transcript|length=7042bp|location=Sequence derived from alignment at sc0000474:199134..206175- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000474:199134..206175- >TCONS_00024100 ID=TCONS_00024100|Name=TCONS_00024100|organism=Clytia hemisphaerica|type=CDS|length=13284bp|location=Sequence derived from alignment at sc0000474:199134..206175- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024100 vs. Swiss-Prot (Human)
Match: GBRB1 (Gamma-aminobutyric acid receptor subunit beta-1 OS=Homo sapiens GN=GABRB1 PE=1 SV=2) HSP 1 Score: 163.31 bits (412), Expect = 8.129e-44 Identity = 109/452 (24.12%), Postives = 226/452 (50.00%), Query Frame = 3
Query: 204 SSNHATGGTHNAEMPEAMMPPLGYD---PTEYGRHGETMNVNMTFWIESVISIDLSAMEYTIHAYLILEWEDERLANVR---NHSVVLRDRSAIFLPDPYCVNCKDPSLSGNSNEFQL-RIHPNGKIYYSQSVTLSPTCRMSLRHFPFDWHRCKLELSSYAHNDSYLKLHW----ARDPNMKETQLQQFTVTDNVQKGTRTGMYLAGNFTIMEVTIEIKRQQGFYVLQVYVPCIILVLLSWIIFFINPDQIGDRLAIGVTLILTMIFLLGYVNGSLPKVSYIKAIDWYMICALLMISMALVETVFVYWHWMKFSQENKEGCGHXXXXXXXXMIESTNIE-----DGLIXXXXXXXXXXXXXFYPPLANTEETIQAGSHTNNTNHFSMTVRR---RLFAVNAFKQNGDIKKRLSA-NIKRPDIS--KKLDQVSRVLFPLMFAFYNVGYFIRYM 1493
S+N + ++ E + ++ GYD ++G G ++V M + S+ + M+YT+ Y W+D+RL+ N ++ R +++PD Y +N K + G + + ++ R+HP+G + Y +T + C M LR +P D C LE+ SY + ++ +W + + +L QF++ D + ++ + G + + ++ +KR G+++LQ Y+P ++ +LSW+ F+IN D R+A+G+T +LTM + ++ +LPK+ Y+KAID Y++ + + +AL+E FV + + + K + E + +E ++ + L+ + + + +++ + T+ + + ++ R R + G I++R S +K PD++ +D+ SR+ FP+ F+ +NV Y++ Y+
Sbjct: 27 STNEPSNMSYVKETVDRLLK--GYDIRLRPDFG--GPPVDVGMRIDVASIDMVSEVNMDYTLTMYFQQSWKDKRLSYSGIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWNGGEGAVTGVNKIELPQFSIVD-YKMVSKKVEFTTGAYPRLSLSFRLKRNIGYFILQTYMPSTLITILSWVSFWINYDASAARVALGITTVLTMTTISTHLRETLPKIPYVKAIDIYLMGCFVFVFLALLEYAFVNYIFFGKGPQKKGASKQDQSANEKNKLEMNKVQVDAHGNILLSTLEIRNETSGSEVLTSVSDPKATMYSYDSASIQYRKPLSSREAYGRALDRHGVPSKGRIRRRASQLKVKIPDLTDVNSIDKWSRMFFPITFSLFNVVYWLYYV 473 The following BLAST results are available for this feature:
BLAST of TCONS_00024100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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