TCONS_00024096 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024096
Unique NameTCONS_00024096
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024096 ID=TCONS_00024096|Name=TCONS_00024096|organism=Clytia hemisphaerica|type=transcript|length=3551bp
TGTCCAAACGCAAGAAATAGTATAGACTTTCCACatatttgcattttttg
accaattgaaaaaataaggaTGTCAGACTTTAGGCTACATAAGAAAATTT
ACCTAAAAAGCTGAAATAAATGGTATTTCTATCATAAATTCCGCTATTAT
GGCTTTGCTAACGTAATCAGCCTTGAATTTTTGGAATCATTGACCtaatt
ttaggcaaaattgggtagaAAGTAAATTTAACACATTTAAAAGgactttt
gaagattttctgtgCCTTTAGTTGCAGTTAAAACACTTTGTTTGGGCGAA
AGGTTGGCATGATCAAAATTTAGAAGCACACAACGTTTTACGAAAACTTC
ATGGGAGTGCTGCAATGACTGTTGATGCTACGATGAGTGCCTCAGCACAA
GCCTGGGCTGAACGAATGGCTTCTATGGGAAAACTGGAACACGCAAAGGC
AGGATCACCTGACAATCCAGAGAAGGATGGAGAAAATATTGCATACATGT
GTTTGATGCCTGGAGAGAAGTATCCTGGACAACGCCCTGTTAAAATGTGG
TACAATGAGGTTTGTGATCCAGGCTACACGTTCAACCCAGCACCTCCTTT
TGGTGGAATGGCCGGCCATTTTACGCAAGTTGTGTGGAAAATATCTGTCA
AGCTGGGTATTGGGATGGCTGAGGGACAAGTCAATGGAGATAAATGTATA
TTCTCTGTAGGAAGATATCGAGAAGCTGGAAATTATGGCGGCAAATTTGA
AGAGAATGTAAAGCAAGGTAGCTTTAACAAAGCAACACATTGTGCTaaag
gaaaaattgatgaaCTACTTGGATTAAATGAGAAAGGAGCAAGTATTGCT
GGGGGTGGTGGAGCAGCAAATACCGCTTCTGCCGCAGCTGGAGGAGGAGG
AGGCAACACCCCTGCTCCAGGTGTAATCCCAACTGGTGCTTCAACCGACC
CTGCAGCTTCTGGTGCTGCAACCGGAGGTGGAGGTAGTGAACCAGGTGAA
CAGAAGCCAGCTGAAGGAGCAAACATTGATGCAGCTGCTAGTGGAGGCCC
TACTACTGGCGCTGGTTCCGCTGCTGAGGCTGCTGGTGCGGCTGGTGCAG
CAGGTGCCACTGCTGCTGGTGGTGGGAACGTGCCAAATTCAGATGGTAAT
GTAGCAAGTGGGGGTGAAAACCCAGCAGCTGGAACACCACCTGGGAATGG
TCCTGGTGAAGCTGTACCCTCAAAGTTGAAAGATGAGGCATTAGAAGCCC
ACAATACATTGCGCAGAATCCATGGCAGTTCTTCAATGACGTATGATGAC
GTCATGGCCAAAGCAGCAGAATCAGTTGCTGTCTCCAATGCAAAGATTGG
CAAATTGGAACATTCAAAAGATTTGTCGAAGTTCGGTGAAAATCTGGCAT
ACAGTTGTGATCCGAATGGCAAATATTGCTCCGTTAGACAATCTATTAAA
CAATGGTATATGGAAGCATGTCCATCTGAAGGACAACAAGCTTATGACTT
CGCAAACCAACCTGGAGCTGGTATTGTTTCACATTTCACTCAGGTTGTAT
GGGCGGAGTCCACCAAACTCGGTTGTGGTAGCGCCATTGGAAAGATGGGC
GGCATGACCTGTATATTCTACGCCTGCCGATACGAAGTGAAGGGCAACAA
GGATGGAAAATATGCCACTaatgtcaagaaaggtgaattCGATGCCGGCA
AAACCTGCCCTTCAATAAACCAAATCCTTCATATTGAAGCAGGTCCTGGA
AGCCCGTCGTCCGTACCCTCGACAAGTGATAATGCAGTGGCTGCAGCTGA
TGGTGGGAACACTGGAGCAGGGTCACCGCCCAAAAATGATGGTGGAAATA
ATGGTGCTGGCGGGGGTGGCGCTGCCAGCCAGATGGATAAAGATCAAGAA
GTGTACCAAACAGATTGTCTGAAAGTCATCAATCGGTTCCGTAAGATTCA
CATGTCACCTTACCTGATCGCAGATGTTAGCCTTCACACCAGCGCCAAGA
AGATGGCAGATACTCTAGTCTCAGGTGGAGCATCGAAGGAGGAATTGAAG
AAGAAATTAGGAAAGCCAGGAGCAGGGTTGTATCAAATCACATGCAGTCC
TGATGATCAAGTCCTTCCACCAGATGACGCTATGGTTAATTGGTATCGCG
AGCTTTGTTTCAAAGTTCCTGACTTTGATTTCAAGTCAGAAGAAGCGCTC
AAGAAAGCTCCTCACTTCACACAGATGGTGTGGAGATCGTCAACAAAGAT
CGGTATCGCCTACGCTACCAAATTGAAACCAAAATCAAAGACTTTGTGTT
CTGTGATAGTAGCAAAGTTCGATCCTGCTGGCAACACTGAAGGTGAATTG
GCGAAAAATGTGGATCAAGGATCCTTTGATCGCTCCTTTTGTGGGAGTCT
TCATTCCATCGCATCTGCAGCGATGGAAAGAGACGCACCCTCCACTTCTA
CCACTACCACCGAACCACAGGCCGTCATTAACCCTGGTCCCGTTGTTACC
CCGTCAGTAGACGGCACCACCCCTGATGGTAGCCCCATCAAGAAGCCATG
TTCCGAACCAAAGATTAACGCAGATGGGACGGTAACACAATCAGATGGCT
CCATCAAGAAACCTGATGGTACGGTTGTCAAGACTGATGGCTCGGTTACT
AAGCCCGACGGATCTGTTGTTAATCCTGATGGATCAGTATCTCCTCCTGG
TTCTGCACCTTCGACTCCCGATGGAGCTACCGTCAGTCCGGATGGGTCCG
TGACCAACCAACCTGGTGCCGGGGTGACTTCCGGTGAGGAGCCAGTCGTC
AAGCCAGACGGTAGTGTCAGCAATCCGGACGGTTCTACGGTGAATCCGGA
TGGTTCGGTGGTGAAAGCGGACGGAGGGAAAGTGAAAGCAAATGAAGCAG
CGAAGAAACCGAACGGTCAAATGACGACTACTGAAGAAGCGAAAAATAGT
GGTGGTGGATTGGCCCTCAGTTCATTCGACGCCGAAGGTTTAGCAGCTCA
CAACAAATTCCGATCAATACATGGTGCCAACGCTTTGAGGATTGACACGC
AGCTCTCACGAGATTGTCAAGAATATGCCAAAGTGTTGGCTGGTCTGGGA
ACCTTGAAACACGCGTCTGGTGATTTTGGCGAGAACCTGGCGTTCAAGTG
TGGAAGCGATCTCAAGGATTACCCTGGTGAAATGCCAGTTATCGCTTGGT
ATGAAGAAGTCTGCAATCCTGGTTACACCTTCGGTTCATCTGAACCTGCC
AGTGGAACCCTCCACTTTACGCAACTTGTTTGGCGAGCCACCACCGATTT
GGGGATGGGTGTGGCACAAACTGAAAAAGATGGCATGACTTGTTTCTACG
CTGTTGCTAGGTATCGTATTCGAGGCAATATGGGAGGCGAATACGTGGAT
AATGTTAAGAAAGGAACCTTTGCAAAGAGTATGTGTGACGATCTCAAGGG
AGTGTTAAGGAAGACCAAAGATCCAAACCCTGCCTCAGTTGATCAGACTG
AAGGAGCAACAACATTAGCATCTACTGGCGGTGATGCCAACGAAAAAGCG
C
Run BLAST on NCBI

transcript from alignment at sc0000474:124654..138667-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024096 ID=TCONS_00024096|Name=TCONS_00024096|organism=Clytia hemisphaerica|type=transcript|length=14014bp|location=Sequence derived from alignment at sc0000474:124654..138667- (Clytia hemisphaerica)
TGTCCAAACGCAAGAAATAGTATAGACTTTCCACATATTTGCATTTTTTG
ACCAATTGAAAAAATAAGGATGTCAGACTTTAGGCTACATAAGAAAATTT
ACCTAAAAAGCTGAAATAAATGGTATTTCTATCATAAATTCCGCTATTAT
GGCTTTGCTAACGTAATCAGCCTTGAATTTTTGGAATCATTGACCTAATT
TTAGGCAAAATTGGGTAGAAAGTAAATTTAACACATTTAAAAGGACTTTT
GAAGATTTTCTGTGCCTTTAGTTGCAGTTAAAACACTTTGTTTGGGCGAA
AGGTAATCAGTTCGATGTCACCATTCAATAGAAATTTAATAGATCGATTT
TAAAAGGTTTTGACTTGAGCATTTTCAAAAAATGATTTAATCCATCTTAG
CATAACTTTTGATCTTGTTGACTAAATTCAATAAACGACCCATTAAAATC
TAAGTTTATCCTTTCTCTTTCTAATAAAAAGGTTAAAGGTTTATGAAGTT
ATACAAATTGAGAAAGTTAGCTTGTTTCTGGCACACCCGGTATAAAACTA
ACTTTAATTAGAGTGCTCAATGGTGTAAATTACAAAACAGTATCATACTT
TGAAAATCAAGGAAAAAAATTTGCTGATTCTTAAAGTTTCTTCCTTTAGT
TTGATACCCTGCCTATAAAGCATGATTTTGAAATTCCTAATTTTTGACAG
GTTGGCATGATCAAAATTTAGAAGCACACAACGTTTTACGAAAACTTCAT
GGGAGTGCTGCAATGACTGTTGATGCTACGATGAGTGCCTCAGCACAAGC
CTGGGCTGAACGAATGGCTTCTATGGGAAAACTGGAACACGCAAAGGCAG
GATCACCTGACAATCCAGAGAAGGATGGAGAAAATATTGCATACATGTGT
TTGATGCCTGGAGAGAAGTATCCTGGACAACGCCCTGTTAAAATGTGGTA
TGTGCTCAGCATACTTTTTTAAGAAACATTTATCAAACATTCAATAATAC
TTGTTTTAATAGCTGCTCTAAAAAGTAACTATTGATGTCCCAAAAATTTA
TGACAACGATGAGATTCCCACTGTAAGAGCTTCTTGCACCTTATTCTATA
AGATATCCATATATACTCAGGTACAATGAGGTTTGTGATCCAGGCTACAC
GTTCAACCCAGCACCTCCTTTTGGTGGAATGGCCGGCCATTTTACGCAAG
TTGTGTGGAAAATATCTGTCAAGCTGGGTATTGGGATGGCTGAGGGACAA
GTCAATGGAGATAAATGTATATTCTCTGTAGGAAGATATCGAGAAGCTGG
AAATTATGGCGGCAAATTTGAAGAGAATGTAAAGCAAGGTATATATGTAA
ATTAAAGGTATTCCTAAATTTTTAGTAAAACGATATCATCTGTATCGCTT
TACTCAAGTTCATTCGTAGGTTGATAATGGCTTCTTTGTTGTATTTACTT
ATAGGTAGCTTTAACAAAGCAACACATTGTGCTAAAGGAAAAATTGATGA
ACTACTTGGATTAAATGAGAAAGGAGCAAGTATTGCTGGGGGTGGTGGAG
CAGCAAATACCGCTTCTGCCGCAGCTGGAGGAGGAGGAGGCAACACCCCT
GCTCCAGGTGTAATCCCAACTGGTGCTTCAACCGACCCTGCAGCTTCTGG
TGCTGCAACCGGAGGTGGAGGTAGTGAACCAGGTGAACAGAAGCCAGCTG
AAGGAGCAAACATTGATGCAGCTGCTAGTGGAGGCCCTACTACTGGCGCT
GGTTCCGCTGCTGAGGCTGCTGGTGCGGCTGGTGCAGCAGGTGCCACTGC
TGCTGGTGGTGGGAACGTGCCAAATTCAGATGGTAATGTAGCAAGTGGGG
GTGAAAACCCAGCAGCTGGAACACCACCTGGGAATGGTCCTGGTGAAGCT
GGTAAGTATTCTCTATTGATTTCCTTGTTTATGTTCTGTGGTTCTTCAAT
TCTTACCAGGATTGCTTTTCCAATCACCCTGACCTGAAGAGAACACATTT
ATCAAAATATAAGGGTGCTATGCCTTGAAGAAAAGTTTTTTCTTTAGTTT
GAGAAAGGTTCTTCTTTAGTGAATTTGTTAAATTATGTGTAGAGATCATA
AACGTCTTCATGTTAACTTAATTAAAAATTTGATTAAAGGTAAACGACTT
AACAAACTAAACAACTTAATTAAACTTTTTTACATTAGGCAAATTTTCAT
TTTTAGTTACAATATGTTCAATACAATATTTTATCTTTTCTGTGTAGTCC
CTGTGTGTTTTTTCCAAATTTTTGAATCACTTCAGATTTTTCTGGTTGGT
CTTTTTGGAGCCATTTCTAAATATACATCCAGTGACTTAATATTTTGTAG
ATTTCTTTTTGACAAAGATTTTTGAAAAAGATTTTAATTGTATATTTGAA
TAAACGTAACGTTAACGTGAACGTTTTTTAGCTATTATTTTTAAATGCTT
TTATATGTGGTGATGAAAGAACATTCATGTTTAATTGAATATGTAATTAC
AGGTCTTTCAAATTTAGGTTAACCTTTTAGTTAATCTGAGAAACAAAGAT
ATCTTTGTGATTTTCAGTACCCTCAAAGTTGAAAGATGAGGCATTAGAAG
CCCACAATACATTGCGCAGAATCCATGGCAGTTCTTCAATGACGTATGAT
GACGTCATGGCCAAAGCAGCAGAATCAGTTGCTGTCTCCAATGCAAAGAT
TGGCAAATTGGAACATTCAAAAGATTTGTCGAAGTTCGGTGAAAATCTGG
CATACAGTTGTGATCCGAATGGCAAATATTGCTCCGTTAGACAATCTATT
AAACAATGGTATGCCTGTCAATAATTTTTCCTATCAGCCTTGAAGTGTTA
GCCTCACATTTCATGTAATTATAGGTCGGCAATAAGATGAAAATTTTTGT
TTGTCAAACTGAGTAAATGTAGCTCTATCTTTTTAAAAATTAGTCATTTT
ATTACATACCGTATTACTTCGAATAAACGCCCCTGGCGTTTTTTAGTTTT
TTGGATTTTAGGAGGGGCGTTTAAAACTTTCTTTATTCGGGCGTTTATTC
GAAGTAATACGGTATTTGGAACTGAAAAGTTGAACGTAATTATCTTTAGC
TTCAATAAAATTTGTAAGTACCTTACCTATACCTTGCTTAATAAACTTTG
ACCTCGGCTTTTCTGAACTTTCATCGTGACTTGATTTTGCCAGGTATATG
GAAGCATGTCCATCTGAAGGACAACAAGCTTATGATTTCGCAAACCAACC
TGGAGCTGGTATTGTTTCACATTTTACTCAGGTAAGTCTCTACAGTCAAC
GTTTCTACACTAAAGCATAATGTAACCTCAGAAATATGGATAATTCGATG
CACAAACGTTTTTAAGATTTAATTTATAATTTACGAGCACAAAACTTGGT
CATAAAAATAGTCTTTGTTTGTTGTTTATTCTGCTTTTCCTCACATACTG
TATTAGTCTAGCAAGCTAGACGACTAATTCAGATATAGTAGAAATAAAAC
AAAAAGTAATGGAGGGAACAAATTTTAGTCGTCTAGGAACCTTTGTGCAA
GCCAAAAGCTTCATATTAATATTGGTTTGCTATTGTTAATGAAACAAAAA
TCTAGGGGGCTTGTTCGAAAAAAAACGGTTTGTTTTGATTTCGTAAATCG
ATTTTTGATTGGTTTAGAAAAAACAATCGAGACGCACACCATTGGTCGAA
ACACATAAAAGGAGAAATCAGAACACACAACAATTTTCTCTCTCGAAAAA
TTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTCTCTCTCGAAAAATTTTTCTCGT
TTGTTTTAAACTAACTCCAAACAAAAGAAAAGTGTCATGTCAATATTGCA
ATTATAATTTTTTTCCCGCTCAAAAAAAACTTTTATTGAAAAAAAAATGT
GTGTTGATTTGTTGTGTGTTAATTTTTTTTTTTTTTTGTCTTTCATTTTG
TTTTGAGAGTTTGTTGTTGCTTGATCAAAAATTAATTTCTCCTTACCTTT
CGCGCGCCAAATTCTTACGGAAGCACCCCCGTCCGAGAAAAGCTTTCTTT
TGTTTTCAGAAAAAACCCTTTGTTTTCTCGCTACGCAAGTTTCTGCGTAG
CCAGCCGGGGATTCTATAAGGCCGGAACACCGGATTCTTCCAGTCGTTTA
AAGAAACTAATATTATCCGTAACAATTATCGTATTATCATTTAACGCCTA
TACTACTGTATTACACGCATGATAAACGACTCCAGTCTANTTTTCTAAAC
TTTCACCGTGACTTGATTTTGCCAGGTATATGGAAGCATGTCCATCTGAA
GGACAACAAGCTTATGACTTCGCAAACCAACCTGGAGCTGGTATTGTTTC
ACATTTCACTCAGGTAAGTCTCTACAGTCTACGTTTCTACACTAAAGCAT
AATTCAACTCGACTGAATTGGAAACTTTCTCTCTGGTAGCAGGATGGTAT
TTTCAACTTTCAGAACAAAGTAACTGCAGTTTTGCCTGTAACCTCAGAAA
TATGGATAATTCGATGCACAAACGTTTTTAAGATTTAATTTATAATTTAC
GAGCACAAAACTTGGTCATAAAAATAGTCAACATTCTTTGTTTGTTGTTT
ATTTTGCTTTTCCTCACATACTGTATATGAAAGTAATTTTTCCCGGACGA
TTTTCTCTATTCTTCTTTCAGGTTGTATGGGCGGAGTCCACCAAACTCGG
TTGTGGTAGCGCCATTGGAAAGATGGGCGGCATGACCTGTATATTCTACG
CCTGCCGATACGAAGTGAAGGGCAACAAGGATGGAAAATATGCCACTAAT
GTCAAGAAAGGTGAATTCGATGCCGGCAAAACCTGCCCTTCAATAAACCA
AATCCTTCATATTGAAGCAGGTCCTGGAAGCCCGTCGTCCGTACCCTCGA
CAAGTGATAATGCAGTGGCTGCAGGTATGTTTGACTTTGATTGGGCTATT
TTTTTAGTATGAATAGAATTATGCTTAAATCCAAAGTGTTTTTTTTCTCC
ATTGCTATGATTAATATTTTTTTTAATGAACTGTTTAATCATGCACCCAG
AATGATTATTCTTCCTTTACTTTTCAAAGCACGTTACGTGGTTAAGGGTA
TTAAGTTTTCTTGTGAAAAATAAGGCTTTAATAAGTCTAACGAACCAATT
GACATTCTGCGTTTCTCTTGACTTTAAACTCATCTATTTAGCTGATGGTG
GGAACACTGGAGCAGGGTCACCGCCCAAAAATGATGGTGGAAATAATGGT
GCTGGCGGGGGTGGCGCTGCCAGCCAGATGGATAAAGGTAGGGCTCACAA
TTTTCATATTCTCCATTTTGTTTTGTAATGGTAATAAACCAAAAATATCA
TTGATTCTTACATTGTATAAAAGTGACTTCTCAAAAAGATTGAAAGATCA
TTATTTAAGGTCTATTTTAATCTGTTTGATGCTTCTTCGGAGCACATGAT
TTTAAGAAAAGGTTACGCTCTCATATAAAATGAAAACACTTGTGGCGTCG
GTGGTTATCAAGATAGTATAGAGCTTGTATGAAGTGTGGTTATTAAATAG
CTTTTCAGTATCTTTGTTTTCCCATTTCTACAACAGATCAAGAAGTGTAC
CAAACAGATTGTCTGAAAGTCATCAATCGGTTCCGTAAGATTCACATGTC
ACCTTACCTGATCGCAGATGTTAGCCTTCACACCAGCGCCAAGAAGATGG
CAGATACTCTAGTCTCAGGTGGAGCATCGAAGGAGGAATTGAAGAAGAAA
TTAGGAAAGCCAGGAGCAGGGTTGTATCAAATCACATGCAGTCCTGATGA
TCAAGTCCTTCCACCAGATGACGCTATGGTTAATTGGTGAGAACTAATTT
CTAAGTTATAATCATTCTCCAATACGTAATACGTATTACATTGAAATAAC
TATCTTTTTTCATCATCATGATGTATTCTTGACGCTTTTGTTAAATTCTC
ATCGCACTATGACATTTATATATCGGCAAAATATTAAATCAATACACTCC
CGAGCAGATTTTCAACTTTCATCCAGGACTTGAAGTACCAGTCTCCCTCT
TTCTTGACTAAAGGAACCCTCAATGATATAGAGATTTTAAGCTGCCGATT
GAGATCTGTCATCATCATCATCATCTTTCGACCGCGATCTTTCACTATAA
TNGCCCAAGTTTATGTTCAAGTAGAAAACCACATTGTGAGATTTTATCAA
CAGAAACACGCATGATGTAATCTACAACTAAAATAAAAAGAAACTGGGCG
AGGGTATCACCTTGCAAGATACCTGCTAAGATGGGAAAAGTATCAGGTAT
TCGCCATTGCGATTAGTGTGCTTATTAAAGGAGAAAGAGACATCGGGACA
TGCAAGCTTCGCATTAAAGTCACCCGCAATGCTTATGAAATTATGTCTTG
GTATATCGTCGAGTACATTTTTAAGTTCCAAATGGAATTCCTCAACTTCT
TCTTTGGGGGTGCTATTGTGTGGACTATAGACACAAATAACTGATAAAAC
TGGATTGCTTGAGAACTCAGCAATCAAAATTCTAGGCGTGATAGATTCTA
CCTTAATCAAGTTATTTTTAGCTTTGGAANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNTGATCCCGGACCCTGGTGCTGTTTGGTGTAGAATCCATTATCTTTTCA
ATTGCTAAAATAGTATGTGCTGCGCAACGGCTACATACCCATTTTCCCAT
GGATGGGGCAGTACTCAACTAACTCGAGAGATATCTCCTTAATTGAGATC
TGTAACTTTCTTTTTATTTCACTTCTAGGTATCGCGAGCTTTGTTTCAAA
GTTCCTGACTTTGATTTCAAGTCAGAAGAAGCGCTCAAGAAAGCTCCTCA
CTTCACACAGGTAATACCGAAACAATGATAAACCTTTTGTCTTTTGCTAC
TCATTTTCAATGTTTAGAATTTTCAAACTAAGTGTAGTGTAGGGCTTGCA
AAACATGTACTAAGGAATAATTTCACCTAGAATTATCAACAAAAATGATA
ATATGCCAATAAACGAATAACGTACGTGAAAACACTTTGGTACGAAGTAC
CGGGTGACCCACGAAAAAGTTCGGACGTTTCTCGGCGTCTTGAGGCCGAA
CAAATGTCCTAAAGTGATTGGAGTTTTATTATTTAGAAAGTAGATATCCT
AACTTAAAATCCGAGCCATTACTTTTTAAATTTGACGCACAAGTTCCCTA
GTTATGAGCTTTTAAACTCAAAANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTACTTTTTAAATACCAAAATTCCGAG
CACTTTGGGACATTTGTTCGGCCTCAAGACGCCGAGAAAGGTCCGAACTT
TTTCGTGGGTCACCCGGTATTTCATCAGACGACATCTTTGATTCTAAAAT
TTCTATAGAATGAAAGTTACGAGGTGGACAAATAACTCCCTCGATTTCTT
TTCTTCTCTCCAGATGGTGTGGAGATCGTCAACAAAGATCGGTATCGCCT
ACGCTACCAAATTGAAACCAAAATCAAAGACTTTGTGTTCTGTGATAGTA
GCAAAGTTCGATCCTGCTGGCAACACTGAAGGTGAATTGGCGAAAAATGT
GGATCAAGGATCCTTTGATCGCTCCTTTTGTGGTAAGTCTTATGCCCTCA
TGGTTGAGTGTGTTGCAAATACCAAAAAGAGGAACAAGTTATCCGCAGAT
CTCTATAGATATACTTCCTATATAAGAACTTTTTTTCGCTAGAGAATGAT
CAGAAGGCTAGTAATCGTTCGAGTTATAGAAAGTTTGCGTTCTACTTGAA
AGGATGAATCCGTTAGATTATTACATGCTTTCTTAGTATATTTCGAGGCT
AGTCATTTTCAATTATTAATTAAAATTTTATCTATAAGTTTGATACTTCA
ATATCAGCAATTATTTACGAAAAAAAATTGAGATAAAAAATGAGGTTTTC
TTTGACGTCTAGCCAGTTTTTGCCTTTCATTTTAGAGTGCCCGCTACTTT
TAAGCTTGAATGCTTTTTGTAAATTTTACAGTTTTACCACTTCCGTCTCT
TTCTTCCAGGGAGTCTTCATTCCATCGCATCTGCAGCGATGGAAAGAGAC
GCACCCTCCACTTCTACCACTACCACCGAACCACAGGCCGTCATTAACCC
TGGTCCCGTTGTTACCCCGTCAGTAGACGGCACCACCCCTGATGGTAGCC
CCATCAAGAAGCCATGTTCCGAACCAAAGATTAACGCAGATGGGACGGTA
ACACAATCAGATGGCTCCATCAAGAAACCTGATGGTACGGTTGTCAAGAC
TGATGGCTCGGTTACTAAGCCCGACGGATCTGTTGTTAATCCTGATGGAT
CAGTATCTCCTCCTGGTTCTGCACCTTCGACTCCCGATGGAGCTACCGTC
AGTCCGGATGGGTCCGTGACCAACCAACCTGGTGCCGGGGTGACTTCCGG
TGAGGAGCCAGTCGTCAAGCCAGACGGTAGTGTCAGCAATCCGGACGGTT
CTACGGTGAATCCGGATGGTTCGGTGGTGAAAGCGGACGGAGGGAAAGTG
AAAGCAAATGAAGCAGCGAAGAAACCGAACGGTCAAATGACGACTACTGA
AGAAGCGAAAAATAGTGGTGGTGGATTGGCCCTCAGTTGTAAGCAATTTT
ATTCCTTCATTATTCTCTCGATATTGTTCGTGAACTAAACTATATAGAAA
ATTATGTAATTTGAAAGCAGCAAGGCTAGACAATCTCTTGGTCGTTTGAA
GAAACTCTGCACTGTATTTCTTGGGTATAAACAGACTCCTATCGTGAACA
CAAATTGTTCAAAAGTTTCTACGTGACCACGTTCTTTTCAAAAGCGACTA
TTCACATAACCGAGTCTTTTTTATCACACTACCATTTCTAAGACAATGAA
GGTTTGTTTACTTCCGTACCAATTTCTAGCATTCGACGCCGAAGGTTTAG
CAGCTCACAACAAATTCCGATCAATACATGGTGCCAACGCTTTGAGGATT
GACACGCAGCTCTCACGAGATTGTCAAGAATATGCCAAAGTGTTGGCTGG
TCTGGGAACCTTGAAACACGCGTCTGGTGATTTTGGCGAGAACCTGGCGT
TCAAGTGTGGAAGCGATCTCAAGGATTACCCTGGTGAAATGCCAGTTATC
GCTTGGTGAGAACTCAGATAATTTGATCTCCAAGTAGTTCTACTGGTGCT
TTGATTCAATAGGATTTCATTCATTTTCGCCTTTTTTAGCCCCACTACCC
TTACTTTTTAAGCTGAAACCTTCACATTCCTATCCATCTGGCTGTCTCCA
TGCCGTAGCTAGGGGTTGTCAAGGGGAGGTTTTGCCAACAGTAATTATTT
GAGAAATGTTGCTGTCTGGATTCAACCTTTGTTCTGTTTGTTCAAAGATC
TTTTGAGTTCTTTTTCACGATCTAAATTCGAAATTGTCTTCATTGTTCTA
ATTGATCCATTCCCGTATCTATTAACTCGCTTATTAAGATATACCAAAGA
CTCCATACTTAGTACAAAAACGGTAGTCGATGCCTCTCTCTTTGATGCTC
GTGTAGATAGCTATCGAAAGAGGAGCCTTCGTGTCGCCTTCAACTGCGTT
CGCAGACTTACTAGTTACTAAAATATCATGACCAATGCATCATAGCCAAA
TCTTTTGTCATTTCATAGGTATGAAGAAGTCTGCAATCCTGGTTACACCT
TCGGTTCATCTGAACCTGCCAGTGGAACCCTCCACTTTACGCAACTTGTT
TGGCGAGCCACCACCGATTTGGGGATGGGTGTGGCACAAACTGAAAAAGA
TGGCATGACTTGTTTCTACGCTGTTGCTAGGTATCGTATTCGAGGCAATA
TGGGAGGCGAATACGTGGATAATGTTAAGAAAGGTAAATTCTAGTTTCAT
GTTTTTTATTCTTAAAGTTTCATTAAAAGAGATCATTCTTGTCTCAAAGT
TTACAGGATTCGGACCATTTTATGTAAACAAATTTCTTTGTTTTTTAATA
TTTTCTAGATAAGTAATATTGAAAATGGGAATAGCTTTAATCAAGCTTTA
ATTAAAAACAAATCTTTATTTAAGAAAGTAGCAGCCGAACCATTACAATT
AGATCTACTTTTATTTGTGTTTTCAGGAACCTTTGCAAAGAGTATGTGTG
ACGATCTCAAGGGAGTGTTAAGGAAGACCAAAGATCCAAACCCTGCCTCA
GTTGATCAGACTGAAGGAGCAACAACATTAGCATCTACTGGCGGTGATGC
CAACGAAAAAGCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013531XLOC_013531Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024096-exon-sc0000474-1575043694:138366..138667TCONS_00024096-exon-sc0000474-1575043694:138366..138667Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1575043694:137721..137967TCONS_00024096-exon-sc0000474-1575043694:137721..137967Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1575043694:137330..137547TCONS_00024096-exon-sc0000474-1575043694:137330..137547Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1575043694:136767..137213TCONS_00024096-exon-sc0000474-1575043694:136767..137213Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1575043694:135860..136100TCONS_00024096-exon-sc0000474-1575043694:135860..136100Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1575043694:134255..134342TCONS_00024096-exon-sc0000474-1575043694:134255..134342Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1575043694:133694..133946TCONS_00024096-exon-sc0000474-1575043694:133694..133946Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1575043694:133331..133426TCONS_00024096-exon-sc0000474-1575043694:133331..133426Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1575043694:132782..133031TCONS_00024096-exon-sc0000474-1575043694:132782..133031Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1575043694:128458..128539TCONS_00024096-exon-sc0000474-1575043694:128458..128539Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1575043694:127286..127454TCONS_00024096-exon-sc0000474-1575043694:127286..127454Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1575043694:126280..126858TCONS_00024096-exon-sc0000474-1575043694:126280..126858Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1575043694:125763..125988TCONS_00024096-exon-sc0000474-1575043694:125763..125988Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1575043694:125035..125249TCONS_00024096-exon-sc0000474-1575043694:125035..125249Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1575043694:124654..124791TCONS_00024096-exon-sc0000474-1575043694:124654..124791Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1510915933:138366..138667TCONS_00024096-exon-sc0000474-1510915933:138366..138667Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1510915933:137721..137967TCONS_00024096-exon-sc0000474-1510915933:137721..137967Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1510915933:137330..137547TCONS_00024096-exon-sc0000474-1510915933:137330..137547Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1510915933:136767..137213TCONS_00024096-exon-sc0000474-1510915933:136767..137213Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1510915933:135860..136100TCONS_00024096-exon-sc0000474-1510915933:135860..136100Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1510915933:134255..134342TCONS_00024096-exon-sc0000474-1510915933:134255..134342Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1510915933:133694..133946TCONS_00024096-exon-sc0000474-1510915933:133694..133946Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1510915933:133331..133426TCONS_00024096-exon-sc0000474-1510915933:133331..133426Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1510915933:132782..133031TCONS_00024096-exon-sc0000474-1510915933:132782..133031Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1510915933:128458..128539TCONS_00024096-exon-sc0000474-1510915933:128458..128539Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1510915933:127286..127454TCONS_00024096-exon-sc0000474-1510915933:127286..127454Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1510915933:126280..126858TCONS_00024096-exon-sc0000474-1510915933:126280..126858Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1510915933:125763..125988TCONS_00024096-exon-sc0000474-1510915933:125763..125988Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1510915933:125035..125249TCONS_00024096-exon-sc0000474-1510915933:125035..125249Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1510915933:124654..124791TCONS_00024096-exon-sc0000474-1510915933:124654..124791Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1491911889:138366..138667TCONS_00024096-exon-sc0000474-1491911889:138366..138667Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1491911889:137721..137967TCONS_00024096-exon-sc0000474-1491911889:137721..137967Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1491911889:137330..137547TCONS_00024096-exon-sc0000474-1491911889:137330..137547Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1491911889:136767..137213TCONS_00024096-exon-sc0000474-1491911889:136767..137213Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1491911889:135860..136100TCONS_00024096-exon-sc0000474-1491911889:135860..136100Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1491911889:134255..134342TCONS_00024096-exon-sc0000474-1491911889:134255..134342Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1491911889:133694..133946TCONS_00024096-exon-sc0000474-1491911889:133694..133946Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1491911889:133331..133426TCONS_00024096-exon-sc0000474-1491911889:133331..133426Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1491911889:132782..133031TCONS_00024096-exon-sc0000474-1491911889:132782..133031Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1491911889:128458..128539TCONS_00024096-exon-sc0000474-1491911889:128458..128539Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1491911889:127286..127454TCONS_00024096-exon-sc0000474-1491911889:127286..127454Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1491911889:126280..126858TCONS_00024096-exon-sc0000474-1491911889:126280..126858Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1491911889:125763..125988TCONS_00024096-exon-sc0000474-1491911889:125763..125988Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1491911889:125035..125249TCONS_00024096-exon-sc0000474-1491911889:125035..125249Clytia hemisphaericaexon
TCONS_00024096-exon-sc0000474-1491911889:124654..124791TCONS_00024096-exon-sc0000474-1491911889:124654..124791Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000474supercontigsc0000474:124654..138667 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.9258e-07	0	0	0.830448	5.02297	5.51273	4.99855	4.03879	4.80865	5.49255	1.80805	3.89321	0.873218	1.9599	0	0	0	0	1.25124	0.699665	0	0	0	0	4.34693	7.40376	0	0	0	0
Blast
[Close]
BLAST of TCONS_00024096 vs. Swiss-Prot (Human)
Match: GAPR1 (Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR2 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.816e-17
Identity = 58/157 (36.94%), Postives = 81/157 (51.59%), Query Frame = 2 
Query: 2954 GGLALSSFDAEGLAAHNKFRSIHGANALRIDTQLSRDCQEYAKVLAGLGTLKH----ASGDFGENLAFKCGSDLKDYPGEMPVIAWYEEVCNPGYTFGSSEPASGTLHFTQLVWRATTDLGMGVAQTEKDGMTCFYAVARYRIRGNMGGE--YVDNV 3406
            G  A   F  E L AHN++R  HG   L++   L+R+ Q+Y++ LA    LKH    + G  GENLA+       D  G+     WY E+ N  Y F      SGT HFT +VW+ T  +G+G A +  DG +  + VARY   GN+  E  + +NV
Sbjct:    2 GKSASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWAS----YDQTGKEVADRWYSEIKN--YNFQQPGFTSGTGHFTAMVWKNTKKMGVGKA-SASDGSS--FVVARYFPAGNVVNEGFFEENV 149
The following BLAST results are available for this feature:
BLAST of TCONS_00024096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GAPR12.816e-1736.94Golgi-associated plant pathogenesis-related protei... [more]
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