TCONS_00024089 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024089
Unique NameTCONS_00024089
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1196

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024089 ID=TCONS_00024089|Name=TCONS_00024089|organism=Clytia hemisphaerica|type=transcript|length=1196bp
CTGCCGCACCCGGTGGAGGTGGAAGTGCAGGAGGTGCTGGTAATTTTGGA
GGAAGTTTCAATGATCAGAATTTGGAAGCACATAACGTTTTACGGGCGAT
TCATGGAAGCGCCCCCATGGCGTTTGACGCCTCAATGACCGCCTCAGCTC
AAGCGTGGGCGCAAAAGATGGCGGCATTAGGAAAACTCAAACATACAGAG
TTTGGATCACCTGATAATCCAGAGAAGGATGGAGAAAATATTGCATACAT
GTGTTTGATGCCTGGGGAGGAGTATCCTGGACAACGCCCTGTTAAAGCTT
GGTATGCGGAAGTTTGTGATCCAGGTTACACTTTTGACCCTCCGCCTCAA
AACTTTGGTGGTGGCACCGGCCATTTCACACAGgttgtatgGAAAACCTC
TATCAAGTTGGGCGTGGGAATGGCGGAAGGTCAGGTTGATGGGAACAAGT
GTATTTTCACTGTAGGGCGGTACCGTGAACCTGGAAACTGGGGCGGAAAG
TTtggtgaaaatgttaaaaaagGAAGCTTTAGTAAGGCCGTCCACTGTGC
AAATGGGAAACTAGAGGAGATCCTTGGCCTACCTCCCCCgaagaaaagac
actttgtACCATACCAACATGCTCAAAGAAACAGCAGTAATCCTTACGCT
AAGAAACGTGGTCAGCTTTTCAAATATATGTCGCCAAGAAAGTTCTACGA
TATTTCATCTAAGTATATGAACTATTCGATATCCCACAATTCACCGGGTG
CCTTTGCCGATCGAACAGCAAGAACTTTGATGCTCTAAACCATCAACAAA
CATTGTGAGAAAGTTCTTTCGGACTAAAGAGGCTCCATTTGTCAGCCCTA
TTTGTTATTAATTCTTTACTGAGTTCAATTATCGCGGAGACCTGTGTCAG
ATAAGGGATAATTATTGAGTTTTTACTCCCTTTATCATTGAGACCCGCTT
CGATGCACCGGCACTAAATGGACTTTCCGATAGACGGTATAACCCTTTAC
TTGACACTATTGTGTAATTGACGGACCAGACGGGTCCTGGTTTCGTCCAT
ATTTATATCTTCATATAAATAAAGTTTGTATATTTATTTATTAGATACAT
TAAATTATGtttattttacaaattaaaaatattttttaatcaattcaTTT
ATCGATTTATATTATTATATGCAAATACACAAAAGCAATATTTCAT
Run BLAST on NCBI

transcript from alignment at sc0000474:104834..109923-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024089 ID=TCONS_00024089|Name=TCONS_00024089|organism=Clytia hemisphaerica|type=transcript|length=5090bp|location=Sequence derived from alignment at sc0000474:104834..109923- (Clytia hemisphaerica)
CTGCCGCACCCGGTGGAGGTGGAAGTGCAGGAGGTGCTGGTAATTTTGGA
GGAAGTGAGTTTAGAAATTTATTCTTTAAGAACATATTTTCACCACTAAC
GTCGAAATAAGTCGAAACAAGTTTTTGTATGCATTTAGTTTTTGACGGAT
TCCATGGAGAATTTAATCTGTTTTCTCTGCGATTCGTTTATGGAAAAGAG
CATTCCGGGAATTCTGATTCAGCCTTCCATGTGTGAAGCTTTTTCAAGAA
TACCAATGTGCTTGGGAGCTTGATGAGGGAAGTGTGTTAATGCAACATTC
TTTCTTACAGGTTTCAATGATCAGAATTTGGAAGCACATAACGTTTTACG
GGCGATTCATGGAAGCGCCCCCATGGCGTTTGACGCCTCAATGACCGCCT
CAGCTCAAGCGTGGGCGCAAAAGATGGCGGCATTAGGAAAACTCAAACAT
ACAGAGTTTGGATCACCTGATAATCCAGAGAAGGATGGAGAAAATATTGC
ATACATGTGTTTGATGCCTGGGGAGGAGTATCCTGGACAACGCCCTGTTA
AAGCTTGGTAAGTAATTGGTGCTAGTTATTCGGCCATGTTTTGGTTAGCT
GTTCCAAAATTTGAAGTGGAATTTCGATTTTCTGTCCGAAATCAAGGAAC
TATATCAAAGAGATTTATTAAAGTTCCTTGCTGAAATGAAAATTCATTAT
TTAAATCAATTTTACGGGAAACTCTTCAATTTTTNTATGAGGATTTGACT
AGGAAACGGCCGGGGAAAATGAAATTGTCCGCTAATCAGAGGTGTCCGCC
TTTTAGAGTGTCCGTTAATTAGAGGTTTTACTGTATATGGTTGATTACCA
AGAACTATAATAGTCGCAGGACAGTGGCTTTCCAACGAGGCTAAAAGTCA
CCATTAGTTTTGGCCCACATTTTGTTAATCCAGAGGGTTGCAAAGATGAA
CCTCCTGCTCCATTGACATACCTTTAATGCACGAATTTGAACTTTAGACC
TTGAAAAGAAATCAATAGATTCTTCGTTTTGTATCTGCTATCAAAAGTGC
ATAATGGATGGCACTCTTTCCACCTCACAGCTTCTCTCGAGTCAACTTCC
ACCTTTTAGCTCTACTTGACAAACGGAATTTTATTTAGGATTGAAAAGAT
TTTATGCCTCAATTTTCGGACCTGTATGTTTATGATAGACTCCAAGAATA
TTAGTTCGCTAACCAAGAACCTATTTGTTGTCTTTTCTCACAGGAGGTTT
CAACAAAGCAACACATTGCGCCAAAGGAAAACTTGATGAACTTCTCGGAT
TAAACGAGAAAGGTGCAAGTATTGCTGCTGGTGGTGGTGGTGGTGGTGGA
GGTGGAGCCGCCACTACTGCTGCTGCCGGAGGAGGAGCCGCCACTACTAC
TGCTGGTGGAGGTGGAGCCGCCACTACTGCTGCTGGTGGAGGAGGAGCCG
CTAACACTGCTGCTACTTCTACTGGTGGAGGTAATACCGCTACAACCGGT
GGTGGAGCCCCAGCTGCGGCAGGGGGGGGAAACACTGCCGCACCCGGTGG
AGGTGGAAGTGCAGGAGGTGCTGGTAATTTTGGAGGAAGTGAGTTTAGAA
ATTTATTCTTTAAGAACATATTTTCACCACTAACGTCGAAATAAGTCGAA
ACAAGATTTTGTATGCATTTAGTTTTTGACGGATTCCATGGAGAATTTAA
TCTGTTGAAAAAGTGTCATGCTCATTATATACTACCTGCGGTTTTCTCTG
CGATTCAGTTTATGGAAAAGAGCATTCTGGGAATTCTGATTCAGCCTTCC
ATGTGTGAAGCTTTTCCAAGAATACCAATGTGCTTGGGAGCTTGATGAGG
GAAGTGTGTTAATGCAACATTCTTTCTCACAGGTTTCAATGATCAGAATT
TGGAAGCACATAACGTTTTACGGGCTATTCATGGAAGCGCCCCCATGGCG
TTTGACGCCTCAATGACCGCCTCAGCTCAAGCGTGGGCGCAAAAGATGGC
GGCATTAGGAAAACTCAAACATACAGAGTTTGGATCACCTGATAATCCAG
AGAAGGATGGAGAAAATATTGCATACATGTGTTTGATGCCTGGGGAGGAG
TATCCTGGACAACGCCCTGTTAAAGCTTGGTAAGTAATTGGTGCTAGTTA
TGCGGCCACACTTTGGTTAGTTGTTCCAAAATTTGAAGAGTTACCGTGAC
TTTGAAGTGGAATTTCGATTTTCTGTCCGAAATCAAGGACCTTTATCAAA
GAGATTTGTTAAAGTTCCTTGCTGAAATGAAAATTCATTATTTAAATCAA
TTTTACGGGAAACTCTTCAATTTTTGTTTACTTTCTGTTTATCTTTCTTT
TTGGACCTACCCCGGTGGGGTGGAGGTCCTATAAATTAACCCATGTTCGT
TCGTTCGTTAGTGTGTTAGTTACCAGCTTTTCTCGAGATTGGCTCANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTGTATTT
TGACCAGTTATGTCTTATGTGTTTCACTGTTTCAATGTTCACTGATTAGT
TTGATAACCAGGTAGGTCCATAAAAGTATCGCTTGTAAATTTAACAAAAA
ATCCCTTTCATTTTACATCCACAGGTATGCGGAAGTTTGTGATCCAGGTT
ACACTTTTGACCCTCCGCCTCAAAACTTTGGTGGTGGCACCGGCCATTTC
ACACAGGTTTGCGGCTCTGCTTTTAATAAGCTATCATTCCTACACTTCAC
TTATTCTAGTTAAATGAATTCTCTCTAGTTCCTATCAATCAATCAATCAA
TCAATTTGAATCAGAAATAACACAATTCACTCGTTTTAATTCTCATACCC
ATTTCTAGCATATTGATTTTAACGTTTTATTTTTTTCAGGTTGTATGGAA
AACCTCTATCAAGTTGGGCGTGGGAATGGCGGAAGGTCAGGTTGATGGGA
ACAAGTGTATTTTCACTGTAGGGCGGTACCGTGAACCTGGAAACTGGGGC
GGAAAGTTTGGTGAAAATGTTAAAAAAGGTGAGGTCTCGTTATTGGTTTG
TCTAATTTCAAGACTATCTTTAGTTTCAATGAGCAAAGAGTTAACAGCCT
TCTATCTGTTTTTGAAGAACACGTTATTGAATTTCCATTTTTTTTACAGG
AAGCTTTAGTAAGGCCGTCCACTGTGCAAATGGGAAACTAGAGGAGATCC
TTGGCCTACCTCCCCCGAAGAAAAGACACTTTGTACCATACCAACATGCT
CAAAGAAACAGCAGTAATCCTTACGCTAAGAAACGTGGTCAGCTTTTCAA
ATATATGTCGCCAAGAAAGTTCTACGATATTTCATCTAAGGTAAGTTTTC
GTTGGATTCTCTTTATTTTAATTTACTCGACTTTCTAACCGTCATGCCCC
GAAGAAAATCGCAATAGTTTTCGCGTGAAATGATGTCAGCTTTTTTGTTT
TCTTTGGAAGTGTGATTTTAACTTGCATATCAAGAATAACAACCAATCAA
TTTCATTTCAATTTCAAGTTGCTCGGACATTTTTTCTCAGCACAGCCCTC
GCTAACCGGTTAGTAGATGGACCCTCTGGATTTTCAGCCCTTTTGATATG
TTCACACCCCCTGGATGCCCGATGTCCTCAACAACCCTATACAATTTTCC
TCTGGAAAAGCCCATTGTATTATAATTATTCATTGAATTTATTCCATTCC
TCTTTAGTATATGAACTATTCGATATCCCACAATTCACCGGGTGCCTTTG
CCGATCGAACAGCAAGAACTTTGATGCTCTAAACCATCAACAAACATTGT
GAGAAAGTTCTTTCGGACTAAAGAGGCTCCATTTGTCAGCCCTATTTGTT
ATTAATTCTTTACTGAGTTCAATTATCGCGGAGACCTGTGTCAGATAAGG
GATAATTATTGAGTTTTTACTCCCTTTATCATTGAGACCCGCTTCGATGC
ACCGGCACTAAATGGACTTTCCGATAGACGGTATAACCCTTTACTTGACA
CTATTGTGTAATTGACGGACCAGACGGGTCCTGGTTTCGTCCATATTTAT
ATCTTCATATAAATAAAGTTTGTATATTTATTTATTAGATACATTAAATT
ATGTTTATTTTACAAATTAAAAATATTTTTTAATCAATTCATTTATCGAT
TTATATTATTATATGCAAATACACAAAAGCAATATTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013531XLOC_013531Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024089-exon-sc0000474-1575043694:109870..109923TCONS_00024089-exon-sc0000474-1575043694:109870..109923Clytia hemisphaericaexon
TCONS_00024089-exon-sc0000474-1575043694:109367..109613TCONS_00024089-exon-sc0000474-1575043694:109367..109613Clytia hemisphaericaexon
TCONS_00024089-exon-sc0000474-1575043694:106318..106399TCONS_00024089-exon-sc0000474-1575043694:106318..106399Clytia hemisphaericaexon
TCONS_00024089-exon-sc0000474-1575043694:105996..106134TCONS_00024089-exon-sc0000474-1575043694:105996..106134Clytia hemisphaericaexon
TCONS_00024089-exon-sc0000474-1575043694:105684..105874TCONS_00024089-exon-sc0000474-1575043694:105684..105874Clytia hemisphaericaexon
TCONS_00024089-exon-sc0000474-1575043694:104834..105316TCONS_00024089-exon-sc0000474-1575043694:104834..105316Clytia hemisphaericaexon
TCONS_00024089-exon-sc0000474-1510915933:109870..109923TCONS_00024089-exon-sc0000474-1510915933:109870..109923Clytia hemisphaericaexon
TCONS_00024089-exon-sc0000474-1510915933:109367..109613TCONS_00024089-exon-sc0000474-1510915933:109367..109613Clytia hemisphaericaexon
TCONS_00024089-exon-sc0000474-1510915933:106318..106399TCONS_00024089-exon-sc0000474-1510915933:106318..106399Clytia hemisphaericaexon
TCONS_00024089-exon-sc0000474-1510915933:105996..106134TCONS_00024089-exon-sc0000474-1510915933:105996..106134Clytia hemisphaericaexon
TCONS_00024089-exon-sc0000474-1510915933:105684..105874TCONS_00024089-exon-sc0000474-1510915933:105684..105874Clytia hemisphaericaexon
TCONS_00024089-exon-sc0000474-1510915933:104834..105316TCONS_00024089-exon-sc0000474-1510915933:104834..105316Clytia hemisphaericaexon
TCONS_00024089-exon-sc0000474-1491911889:109870..109923TCONS_00024089-exon-sc0000474-1491911889:109870..109923Clytia hemisphaericaexon
TCONS_00024089-exon-sc0000474-1491911889:109367..109613TCONS_00024089-exon-sc0000474-1491911889:109367..109613Clytia hemisphaericaexon
TCONS_00024089-exon-sc0000474-1491911889:106318..106399TCONS_00024089-exon-sc0000474-1491911889:106318..106399Clytia hemisphaericaexon
TCONS_00024089-exon-sc0000474-1491911889:105996..106134TCONS_00024089-exon-sc0000474-1491911889:105996..106134Clytia hemisphaericaexon
TCONS_00024089-exon-sc0000474-1491911889:105684..105874TCONS_00024089-exon-sc0000474-1491911889:105684..105874Clytia hemisphaericaexon
TCONS_00024089-exon-sc0000474-1491911889:104834..105316TCONS_00024089-exon-sc0000474-1491911889:104834..105316Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000474supercontigsc0000474:104834..109923 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.18107	2.76759	1.24157	0.371225	0.564691	0.00104673	0.631233	0	0	0	0	0.536415	1.31274	0.62675	0	4.4584	1.43795	1.63895	0	0	0	1.25654	1.19894e-07	1.02298	2.21766	1.6608	0	0	7.4378e-10	1.61371
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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