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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024087 ID=TCONS_00024087|Name=TCONS_00024087|organism=Clytia hemisphaerica|type=transcript|length=1277bp
CGGAGAACAGTTTTTCTCATTTCGTGTCTTTTGATCAAGCTCGTTACCGG
TGATTTCGCAGAACGTCTACTGGAACAACACAATGAGCTGCGAGCCACAC
ATAATATCGGTCCCTTGAAACTGGACGATGACTTAACGAAAAAAGCAAAT
GACTTTGTCCGAAAAGCAGCCAAAAATGGAGAGTTTTTTGACGGACAGGA
CCCTCCTCCTGGGGTCAACACTATGATGGTGTGCGCTTCATATAAGCGTA
AAGAAGACTCGGCAAAGGACGTCGCATCTTCGTGGTATGACGAGGTATGC
AGCGATGACTTCTCATTCTCCGACTCAGGAACATTACAAAAAGCCACAGC
TTTCACTCAGATGATCTGGAAGGATACTAAGTTGTTGGGTGTTGCTAAGG
CGACGAGCAAAGACGGCGCAGAGTCATGCTCTTTCATAGCTGCTGTTTAC
CGACCAGCTGGGAATATTGACGTTGGTTTCAAAGACAACGTGAAAGAGGG
AGAATTCAAAAGGTCTGAATACTGCAGCAAATTCAATGATAAAAGGTGAA
AAGTGTGGCGAGAAAGAGGACACGAAGATTAAACACGAAGAATCAGACCA
CTTTCATCATGGGAATTCAACAGCTGGTCTACCATCTTATATTCGATGCT
TCGATTGGTTGCGCAACCCCTTTTCGTCTTCAACTTTCGCTTATGTTAGA
GAGGTCGAGAAAATATGGTTGGTTTAGAATGCCGTTAttaggtacacgtt
tttttataagaacatccaaaagcttTGAAGccgttggatgttcttaactt
tttgaattttaggtctaaaaatgttcttaacatgttcttactttcgccat
tttttaaccatttttacccatttttctaagaaataggGTATTTTTGAGTC
TTGCTCTAAACATTTTGGccgtcgaagccttatgctcttatagtTTGAAG
GATGCGATACTTTATCAAggataaagaaaagaaaatactgTTTCTGTCGT
CATTTTGGACGGGTTTTGGACTAAACAGACACACGCCCCTAATCCTAACT
GGAGTAAGGAATTAGGGTTATCTTAAGATTTTGTTGATAAACGTAACCGT
TAAGAATGTAAATaaacaattataaaaaaattaacatgTAAATAATCAAA
TCGCCtttgtatatttttcaaataactATTTATCCATAAAGTATATAATT
TCAATAATTGACAATagataatcaaatcaaattaattAGAAAGTATCAAA
TTGGTAAATAGTGAGACGTAAGTTTTT Run BLAST on NCBI transcript from alignment at sc0000474:101664..104506- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024087 ID=TCONS_00024087|Name=TCONS_00024087|organism=Clytia hemisphaerica|type=transcript|length=2843bp|location=Sequence derived from alignment at sc0000474:101664..104506- (Clytia hemisphaerica)
CGGAGAACAGTTTTTCTCATTTCGTGTCTTTTGATCAAGCTCGTTACCGG
TGATTTCGCAGAACGTCTACTGGAACAACACAATGAGCTGCGAGCCACAC
ATAATATCGGTCCCTTGAAACTGGACGATGACTTAACGAAAAAAGCAAAT
GACTTTGTCCGAAAAGCAGCCAAAAATGGAGAGTTTTTTGACGGACAGGA
CCCTCCTCCTGGGGTCAACACTATGATGGTGTGCGCTTCATATAAGCGTA
AAGAAGACTCGGCAAAGGACGTCGCATCTTCGTGGTAAGAGTTCCTCCTA
ACAAATCCTATGCTTGATTTGTTGCATAGTTCTCTGAAAACACTGTTTAT
CAATTCAATCGATGAATAATTGAGTAATCCAATTGAGTCTGGAACCATCC
TTTCGTTTCTTATTGCAGTTGACAGTTCTTTTGTGAAATTTTTGGCTCAA
GTATTCATTCTTCTGACTTATTCATTCACTAACTTGGACTCACTTACTCA
CTTAATTCATTCATTCATTCATTCGTTCGTTCGTTTCTCTATTAAGTCAT
TCTACTCGCTTTTTTACTAATCTGTTCTCATGTTCAGTCACTCATTCCTT
TGTTTTCATTCATTCATTCATTTCAGGTATGACGAGGTATGCAGCGATGA
CTTCTCATTCTCCGACTCAGGAACATTACAAAAAGCCACAGCTTTCACTC
AGATGATCTGGAAGGATACTAAGTTGTTGGGTGTTGCTAAGGCGACGAGC
AAAGACGGCGCAGAGTCATGCTCTTTCATAGCTGCTGTTTACCGACCAGC
TGGTACACGATTTCTTTTGATGACTTGTTCGATTGTTTTTTCGATTTTCA
ATTGTAACACCTCTGTCTCACTGGGAAGGTGCTCTGAAAATTGAGGAACC
CTTCTCACAGACCCGGTGGGACTTTTCTGCCAATGGGGGTAAAAATAACG
AACCAAAACTCGATGGGATTCATGTTTTTTATGGCTGGGTATTTGAATTC
CATTGTTTTTGAGCCAGAAAGTTCAATAGGGATAAAATATTTTTCAGTGA
GGGTTTGCTTACCTGATTATTTTCAGTGAGGACAAAAAATAGAGCATAAT
TTTTCCACTTTCCCTCTGCCCAAAAAAGAATGCAGAGAGTTTTACTGAAC
CCGTGGTTTCTGTTGGGAATATTGCATGATTTTCAGGACAGACGGTAGTA
AGAAAGTAACTTACTTTAATGAGATTAATTTTCGCGTGGATTAAATTTCT
CGGATGGCTTTATTGGGTGACAATTTTTTCACGATTTTGTGCCTTTTACT
GTCGAAACATGTTGGTTGTTGAAATATGCATTATTAGCGCCTCTTTGATA
CCAGTACTCTTCGTTGACATATTTTGAGTTTTGTTTATAAATATTTCGCG
GATAAGGCCTTTCCAAATTTCCATTGGGACTTAATTTCGCGGAGACAACA
AAATCCGTGAAATCTGCGAAGTTTAATCCCCGCGAAAATTTATCCCATTA
AAGTAAATTGTTTAAAACTTCTTGTTTCTACCAGGGAATATTGACGTTGG
TTTCAAAGACAACGTGAAAGAGGGAGAATTCAAAAGGTCTGAATACTGCA
GCAAATTCAATGATAAAAGGTTCGTTGTTATTATCAATTTGTTTTTTTTT
TCTGGCATACGGGCACTGGTGGATTTAAGACAATAGAGCGAGTACGTCGG
AAACATGCGAAGGAGTGCAACGCTCGTTAAAGACAATGAAATTACAATTA
CTTCCTCTGATAAGTTCGACGTGGTCAAAATTCGAGGTGTTCGTTTCCTC
ATACTTTAGCGTGAATGTTTCATCCCTGTTTCAGTGATAATAACCGGACT
TTATGTCATTTTTGTCATTGACATTATGTCATTTTTATGTCATTTCTCCA
CTAATTGGAGGGGATTGGTCGCAAACACTTCTAAATGAAGCTAATTTCTT
TTTGAAAATATGAAGAAACTCCCCAAAATAGTTCTGAACCGCCCCTAAAA
GCCTAGTATGAGTAGGGTTGCCACCAGGTTCTAGTGCTAGACCCAAAAAA
AGTACACAAACTCATATTTTCTCTCAAAACTGTAATATCAATATTCTCAT
TTTTTCCGCAGGTGAAAAGTGTGGCGAGAAAGAGGACACGAAGATTAAAC
ACGAAGAATCAGACCACTTTCATCATGGGAATTCAACAGCTGGTCTACCA
TCTTATATTCGATGCTTCGATTGGTTGCGCAACCCCTTTTCGTCTTCAAC
TTTCGCTTATGTTAGAGAGGTCGAGAAAATATGGTTGGTTTAGAATGCCG
TTATTAGGTACACGTTTTTTTATAAGAACATCCAAAAGCTTTGAAGCCGT
TGGATGTTCTTAACTTTTTGAATTTTAGGTCTAAAAATGTTCTTAACATG
TTCTTACTTTCGCCATTTTTTAACCATTTTTACCCATTTTTCTAAGAAAT
AGGGTATTTTTGAGTCTTGCTCTAAACATTTTGGCCGTCGAAGCCTTATG
CTCTTATAGTTTGAAGGATGCGATACTTTATCAAGGATAAAGAAAAGAAA
ATACTGTTTCTGTCGTCATTTTGGACGGGTTTTGGACTAAACAGACACAC
GCCCCTAATCCTAACTGGAGTAAGGAATTAGGGTTATCTTAAGATTTTGT
TGATAAACGTAACCGTTAAGAATGTAAATAAACAATTATAAAAAAATTAA
CATGTAAATAATCAAATCGCCTTTGTATATTTTTCAAATAACTATTTATC
CATAAAGTATATAATTTCAATAATTGACAATAGATAATCAAATCAAATTA
ATTAGAAAGTATCAAATTGGTAAATAGTGAGACGTAAGTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024087-exon-sc0000474-1575043694:104223..104506 | TCONS_00024087-exon-sc0000474-1575043694:104223..104506 | Clytia hemisphaerica | exon |
| TCONS_00024087-exon-sc0000474-1575043694:103705..103880 | TCONS_00024087-exon-sc0000474-1575043694:103705..103880 | Clytia hemisphaerica | exon |
| TCONS_00024087-exon-sc0000474-1575043694:102888..102972 | TCONS_00024087-exon-sc0000474-1575043694:102888..102972 | Clytia hemisphaerica | exon |
| TCONS_00024087-exon-sc0000474-1575043694:101664..102395 | TCONS_00024087-exon-sc0000474-1575043694:101664..102395 | Clytia hemisphaerica | exon |
| TCONS_00024087-exon-sc0000474-1510915933:104223..104506 | TCONS_00024087-exon-sc0000474-1510915933:104223..104506 | Clytia hemisphaerica | exon |
| TCONS_00024087-exon-sc0000474-1510915933:103705..103880 | TCONS_00024087-exon-sc0000474-1510915933:103705..103880 | Clytia hemisphaerica | exon |
| TCONS_00024087-exon-sc0000474-1510915933:102888..102972 | TCONS_00024087-exon-sc0000474-1510915933:102888..102972 | Clytia hemisphaerica | exon |
| TCONS_00024087-exon-sc0000474-1510915933:101664..102395 | TCONS_00024087-exon-sc0000474-1510915933:101664..102395 | Clytia hemisphaerica | exon |
| TCONS_00024087-exon-sc0000474-1491911889:104223..104506 | TCONS_00024087-exon-sc0000474-1491911889:104223..104506 | Clytia hemisphaerica | exon |
| TCONS_00024087-exon-sc0000474-1491911889:103705..103880 | TCONS_00024087-exon-sc0000474-1491911889:103705..103880 | Clytia hemisphaerica | exon |
| TCONS_00024087-exon-sc0000474-1491911889:102888..102972 | TCONS_00024087-exon-sc0000474-1491911889:102888..102972 | Clytia hemisphaerica | exon |
| TCONS_00024087-exon-sc0000474-1491911889:101664..102395 | TCONS_00024087-exon-sc0000474-1491911889:101664..102395 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000474 | supercontig | sc0000474:101664..104506 - |
Blast
BLAST of TCONS_00024087 vs. Swiss-Prot (Human)
Match: GAPR1 (Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR2 PE=1 SV=3) HSP 1 Score: 82.8037 bits (203), Expect = 1.695e-18 Identity = 51/157 (32.48%), Postives = 80/157 (50.96%), Query Frame = 1
Query: 31 LIKLVTGDFAERLLEQHNELRATHNIGPLKLDDDLTKKANDFVRKAAKNGEFFDGQDPPPG-VNTMMVCASYKRKEDSAKDVASSWYDEVCSDDFSFSDSGTLQKATAFTQMIWKDTKLLGVAKATSKDGAESCSFIAAVYRPAGNI--DVGFKDNV 492
+ K + F +L+ HNE R H + PLKL +L ++A + A + G + ASY + + K+VA WY E+ +++F G FT M+WK+TK +GV KA++ DG+ SF+ A Y PAGN+ + F++NV
Sbjct: 1 MGKSASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASY---DQTGKEVADRWYSEI--KNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGS---SFVVARYFPAGNVVNEGFFEENV 149
The following BLAST results are available for this feature:
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