TCONS_00024085 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024085
Unique NameTCONS_00024085
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024085 ID=TCONS_00024085|Name=TCONS_00024085|organism=Clytia hemisphaerica|type=transcript|length=2811bp
CGAACTTTTTGCTATCGTGTTATTATCTTGATGAAATCTTGTATTAACTG
GTCTTTAACAGTTCTTTTGAGATTCTGAGATTCTTGGTGAGATTTCGAGC
AAGTTATTTGGGATCAACACGATCATttgatttaaacttttttcattgTC
AGTATggcaaaaattaccaaaatttgGTACCAACAGAAGAATCAAATACT
AACAAAAATGCCAGACTCTCCGGCCAATTTACCATCGGATGTTCCGCCTA
TTTCATCACCCGGTCATTTACGAATTCCGTCATCAGCCAGTCAGCTTTTG
GACGTGCGGACACCTATTTCGATTGCTACATCACTTCCAAATGgatatca
tcatcatcaccatCCAGCAAGCCCCAATCAACCTCTCTCTCCAGGCCTCT
TAAATGGTATGTTAACTTTTCGTTTTAGTTTCCCAAAGAACTCACTGACT
AGTTAATTAGACTTACAACTTATAAGTGTTCCTCTTCAAACAAATGTCGA
AAATGCTTACCGCACTGGCACAACCTTGGTATCTTTCGAATCACTTCTAt
tatttgcacttgtaaaataATAAGTAAACTAAGACTTGATTATACTGTTT
CAATTTATTGATTTGGAGCATATTAATGGGAGACTTTAACTCTAGTTTTC
CCAAGATTTTGATCATGGACAGATTTTTAGATGTTTGTGCAGGTTTGTGT
GTATCCTTTTGAATCTTTCCATCAGAGAACCGGGAACGTCCTTCGATGAA
TATTCTCAAGATAAACCAACCAGGGACCTTATTCAGGCTCGGCCGTTCCA
AGGCatgaaaaaattacatttcGCCGGTTTAAAAGTTTGGTTCGTCTCCT
CAAGTACATATTTATGCTAATGAATACACTGGGCTCTCTAAAAACTCACT
GGCCCAGAATCTAGAAATCGtcagagttaatttttcattcgccagcctat
caaaaacaaagcaagACCCCTAACCAACATTTTTTCAGGTATGCAGTTAC
CACACACGTGTGCAACGAGACAACTGAGCAAATTGAAACGTTTTTTAACC
ACACTCCAACAGTTCGGTTCGGATATATCACCGGAGATTGGGGAGCGTGT
TCGTGGACTCATTGTTAACCTCATTAACAGCGGAATTTCAGTCGAAGAAT
TTCACCAACAGTTACAGGATGCAACCAACTTCCCTTTACGCCCATTCGTC
ATTCCATTTCTGAAGACGAATCTACCCTTACTACAACAAGAGTTGTTGTC
CTGTACTCATCTCTCCAAACGTAGTCCTCCTCCACACTCCTATACTGGTT
CTCCACCGGAGAGCGAGCGTGAACGAGAGCGGATCAAAAAAGAAGCAGAA
GAAGTACTTTTCGAACGCGTTGGAGAAAAGAGGAAAATGGACCATGAATC
TAGATCGAAAGAGAATGGGCACCACTTGGATTCATTCGGTCTTCCATCGC
CCAACAAAAAGAAGCATTTCACCTCACCTGGTTACGAAAGAAACGAAGAA
CGAAACCCCATGGTGGATCAACTCCTCGAAAACTACAAACAAGACACCGA
AGATTGGCGTAATATCGAAACCATTCTACAGTGTATCGTCACGTTCGTTG
ATAACGCCAAACGTTCCGTTGCCGCTATACAAGAACGATGTATACGCGAC
CGCGAGGAGATGGCTTCATGGGCGCGCGCAATCACAGCGGACGCAGAAAA
CGAAATCAAACGTAGAGCCAACGAACTAGTGACGAAAGCGCTGAAGCAAA
CAGACGACCGCGTGAACGAAGTGAAAAAGCGAGCGGAAGATGCTGTATCA
GATGTTAAACGTCAAGCCGTCGTCGAACTCAAAAAAGCCGTCAACGCGGC
CGAAGAGAAAGCGAATGACGCCTTAAGTTTAGCCAATCAACGCATGGACC
AAGCAGTTCAAGAAGCAAGGCGTAAAGCGACGGAAGAAACGTCGAGTATC
ATCAACTTGCAGGATGCTTCTAAAGAGAACTGTTGGAATTGTGGGCGGAA
AGCAAATGAGACATGCAGCGGGTGCAATCACGCCCGATACTGTGGTTCTT
TCTGTCAACACAAAGATTGGGATACACACCAAAAAGATTGTCCGAAACTC
AAACCACAACCCCCGTCTCAACCTCTACAACcacaacaaccacaacaaca
acaaatacgTGAACCGCCCGTGCGACCGAAATCTCCGCTCGTCATCGAAC
GCGTGCAAGATCAACAAACAGTAACAAGTAGCGATGAACGGAACAGCCCG
GTAACCGGCGTCAAACCAGCACCTCTACCTACGGAAGTACCCGCCGTCAC
ACAACCTGTTTCTCAACCGGTCGTTGCAAATGAAGCTGTATAGTTTTCAC
TTTgtctatgtttttgtttacgGAGTATTTCGTGTATGTAGTTTGTTTTT
TCGTATTATGTATGTATTAAACAGGGGGAAATggtttgggaaatttttat
tttttatgatattCTTTATGAGCGTATTATTTTTTGTACATAtacttttg
ttttcttgatcGACCACTGTAAATATAAAGAAAGACGGTAAAATGTCTGC
CATATTTGTTTGATTCTCGATGGATGACGTCATTCGGACACTTTCGAATT
TTGTATGGCGCAATGTTGCAGGAATATTTTGCAAAGGATTCTGGACGAAC
TATTACAAGCTTGCGTTATGATTGGCCAATATGAGAATTTGTTCTAAATT
CGATACTAGACCTCTTCATTTCGATTGtgctttaaaataaaatggttttt
ttaggaaaaaacaATCTAGGAACGAAGTGAGTAAACAATGCAAGGGTCGC
TTTTTCCGGAC
Run BLAST on NCBI

transcript from alignment at sc0000474:85431..101243-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024085 ID=TCONS_00024085|Name=TCONS_00024085|organism=Clytia hemisphaerica|type=transcript|length=15813bp|location=Sequence derived from alignment at sc0000474:85431..101243- (Clytia hemisphaerica)
CGAACTTTTTGCTATCGTGTTATTATCTTGATGAAATCTTGTATTAACTG GTCTTTAACAGTTCTTTTGAGATTCTGAGATTCTTGGTGAGATTTCGAGC AAGTTATTTGGGATCAACACGATCATTTGATTTAAACTTTTTTCATTGTC AGTATGGCAAAAATTACCAAAATTTGGTACCAACAGAAGAGTGAGTATCT TTTGTTTTTACCTCTATCAAGTTATCTTCGTAAGTTTTTCATTTATTATG AGATTTATTATGAGTTGAACTAACCATGATTTCTGTATTTATTTTTTATG TTCAGAAACACGTGTACTAACGCTTTTTGTAGTTTTTATTTACCATTGAG TTTCAAGCCCGAAGGGCTAGAGGCGAGACTCCTGGATGGGAAATGAAACC GCTTATTTCCCATCCAGAACGCCCGCGCGTAGTTTTTACACAAACGCCGG ACTGAAACTAAAATCTATCACTAGATTTCAAAAAATGTAGTCCTCCAAAA CAAAGGAACCGCTATGTACAATCCATCGTCGTGATTATTACAGTGCGTTT TCTATGCGCGTTTTGGATGGGAAATAAGTATATTCGATTTCTCTTTCCTG AAACGGGTTAAAGTTTCGCCACCAGCCCTTCGGACTTGAAGCTCAATAGT TTTTACCACACTTTGTAATAAAACTCAACGCACATTACAGAAAGATCATA ATTTTACCAAGCCTTAAGAAGTGTCCAGTTTATCCTGTTTTCGAAGTCAG AAGCTATATTTTTTGCTGTTTTAAATATATATTTTTTGGCATTTAAATAT TCTATTACAAAGTGAGGCTGGTCAATTACCACAAAGTGTGGCGTTTATTA CGAAGTGCGTTAGTACAACATGTACACAGAAATCCAGACTTGATGCGTAC AAAACTGACAATATTGTCAAATGTGTGTCATGAAACTTCTGCGTGAAAGC ACCACCTTTTTATTTCACTGATAATATAATAGACGTAGTACAATCTTGAG CGCTTCCAGTAAGGGGCTAATTTTTGTAATTTCAGTTCCATTCAGATAAG TCCCACGTATTCATTTTCGAACCTCAGCGGGACACCCCCGTTGGTCGCCA AGAGTAGCCCCCCCCCACCCCAAGCCGGGAGCTACTTGATACACTTACAA ACTTACAATTAATACTCAATGCCTGAAAGATTGTAATCCCGAGGATGGAT GCACTTAATTCAAAAACGANCCCCCCCCCCCCCCACCCCAAGCCGGGAGC TACTTGATACACTTACAAACTTACAATACTCAATGCCTGAAAGATTGTAA TCCCGAGGATGGATGCACTTAATTCAAAAACGACTATACGTGCGGCCCAA AATTAGGCCTTTGAAATTGGACCCTTACAGTACAGAGAAAATTTAGCCAA AGTTGAATTTGGCCGAAAAATTAACACTTACGCATTTTCTTGAATCTTGG GAAGCTTGGTAAAAGGACTCTAGGGCCGGCGCACGTACGTACGGTAGGTT GTTTACCTTGAGTAAACAAAGCAAATTTTGGCAAAATTTTCTAAAAAACG AATCCCACGTGGGATCCATTTTTCGAACCTCGGCGAACGTCGAACGTCGA ACGAAACTGTCATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NAATTGTATGCAAAAATACAGGAACGAAAAAGCCGTGGTTGGATTAAGTT GGAAAGTATGCAAAACATATGCAAGTTTACACAAAGATTAAAAAGACAAC AAAATATCTTTTATTGATAAATATTATAATCATTAGAACAATGAAAGATT AAATTTCTTAATCTAAAAAGAAATATTAACAGAATAACAAAAGCCTTTTA GAAATTTGTTCTTAAAGACAAAGCATATTCTGTTTTCATGCCATTAAAAA ATTCCATGAAGATAGACGGAGTACACATATCAAACTTTCAAAACATGCAC AAACTGAAAGAAGCAGTAATTATGACACAATTATGTCACAATGTTTGATT TGATCATTTGGCAGTTCTATTCCCAGGACCAGGAGAATAATTTACCGTCA GCCGAATAAGGATTTTTTTTTTACCCTCGTTGGCAGTTGGTGATTTTTCA GCTTGAGTTTATGTCTAATGTTATGGTTTTTTGAAGTGCTTGTTCTAAGA GGTGAGCGAATATAATTATTTTTGTTTTTAAGAGAAGCAAATTTAAACTT TCTTCTACAAGGTTACACTTTTTTATATTATTTTTAATTTTTATATTAAT ACTTTCTTTTTGCATATGTTTTGCATGTGTACTTTCTAAGGGAATTTCAC TACAGCATTCGGCCACCATAATTTTTTAATACAATTCAATATGGCGGATA GACAGGCGAAAAGGTCTATTCTTATACACTAAGCAAATCTTTTTTCTCTC AGTCTATGTCGCTTTCTTTAAAAATCTTGAAAGTTTGTGTTTTTAAAGGG GAAATACACTACAGTATGAAGAATTATTGCCCTAATGTAGTATTTGGAAA AGAAGAGCTTTCACCATCAGGAGTTTGAACAGTCGCTTTGTTTGATGTCA GTGTGTAGAGTAAATCTGATAACATTTATGATTTTTGAAGGTAAGAGGAA AATATTAAACAGTTTCTCAATAGTTTTTATAATTAGATAAGATTAGCACT CAATAATGAATGAATAATCTGGATGAAGAAAAATTCCATTCCTGGGATGG GGCTAAACTAAAGTGCAAAAAAACCCTGATAACCAATAGTGGTTCAGGTT CACCTTTTTTCAAGTAATTTACCCCTCTTCCCAATAAAAGTAGACAAAAT AAATTTATGCCTCTTTCTTTGATTTATGCTTCTTTCTCCATTTAGGGATC CATGACAAAAAGCTTTCGAATTTTTTATCGGCATTGGGCCGATAAGGGGG TGAGGGGTTCAACTACATCGATAAAAAAACAAGTATTGGGACAAAAATCT TTTCAGCCAATTTCTTTCTGATTTCGTCCACAAACTCCACTGAAAGCATA CAATTTCACTTGCTTTCACCTTTGCGCACAAATTCGCAACTTTAAAAGTA CAGTTTTGAATTCGCTTTGATAAAAAAACTTTTTTATCATCGGCCAGCAT GCTGTCGTTTCCTTCGAAATGTTGCAACTTCATCGCGTCTTTTTAACTTT CATTTTGATTAACAATATCAATGCGGGTATGAAGAAACTCAACGTTGGTG CAAGTAGACAAAAATTCAACGATGATGGGTGGGAAGGCGAGATCAACGCA ATAGCGGACATTATTGGAAAAAGTTGCGTTTTCGAAGATGAAAAAGCTGC TTTTGAAAGATTTTTGCCTGAAGCTTATCAACCCAATGTCAATAAAAAAT TTGAAAGTTTTTTGTAGAAGACCCCTTATAATAAGGCCTGGGTCACCAAT AAGTTGTGTTTGCGTCATTTTTAGCCCCAAAATATGATTCGGTCTTAAAT CATCGGAAAAAATTGCTCTGAATATAAGTGGTCGGGCGGTGGTAAATGTG TAAATTTGATTATTTTGCATATCGCGACCACGCAAAAAGCAGTTAATATC TTTGAAAAATTGCGGATAAAAATCTTAAAAACATGCGATGATCAAAATGC TGGCTACACTGAATCTACGAAATTCTTTGAATAATATTGCTAAAAAATCT GACAAATTTTCTGACTTTCCGACTAGAAAAGGGTCGGATTTTTAAGATAA AAAGTGAGTCAGTCGGAGCGCAAACACAACTTATTGGTGACCCAGGCCAA AATTAAATTGTTTCTTCTTAAATAATTTTGTTTTTGAAGAAAGCCATATT TACTCTTTTTGGAGATCAGATGCAAGCTTAGGCAGCGTTTGATTTTTGGA CCTACCTGGAAGTCCTATAATATAAATTAACCTATGTTCGTCCGTCCGTT CATCTGTTACCAACTTTTCTTAGGATTGAATCATAGAGAAATTTCGTGAC TTTTGGTAAAAAGTTGCAAAATGGTGATTATCAGAATGTGACGCAGCCCA AATTTTGGAAAAAGGGGTTTTTTTGGACTTGGTGAAAAATCTGTTCATTA GTTTTCCTAATTTTTTATACAAAGACGTAAAATTAAATTGTGCTAAATAT GAAAAAGTTTATTTTTGAAAAAAAAATTTGGGGGGCTCAAAAATGCCCAA AAATAGGGTTAGACTCTAACTTGGGACTATCTGACAAAACATGGGACGGC AATTCGGCCACCATTTCACCAAACCTCCAAAGTCATTTGATTTGAATTAC TGAACGGTGTATTAAAAAATACACAATTTCTCTTTTTTAGACTTTTAAAT CGAAATATGAATAAAAAATCTGTAGTGAAACACACGCAAATGTCTGGAAC TAAGAAGACCATATTAGTGGCAAAACGAAGGAGTTACACACTCGTTATTT GTTAATCCCATCAGGCGATAGGCGGTTAGGTGGCAGGCGTTCTCTAATTC TCCAATCGGCGTCCGGCCATTTTTAATGAAAACAAAAAAGTTTAAAAGGG TGCACTATCAGTGAAAGTTATTGTGACATCTTATGATGACAGAAAGTATG ATTGATAAACTTGGTGGAGTTATCAAAACAAATTTGTTGTCAAAGAGATT TAAGAGTATATAAAATACAGACCAGATATAAAAAAATTCGGCGCCAACTT GCAAAATTTTAAATTATTCAGTTTATGTTTCTACATTGCCTTCATTAAAC TTTTATTATTCGTTTTATAAACAGGTAGGTCCATAAAAGTATCGCTTGTT AGTTCTACAATTAAGGCTGGGCTTAAAAAATTGTTGATTTGCCGTCACCC GACCCTAGATTTTGGAGGTCGGTTGGTTGGTCAGAATTTTTTTTATTTTG CTGATTTATGAAATTTTCGTCCATGGAAGGGTTAACAGTTTGTTTACATT TAGGTAATTTTGAATAAAAAACAGAAGTGCTAGCAGGGAATTTACGATTC TTATGCTCGAGACAAACAAGATACGAGTTTTGATTTTTTATTGTTTGAAG TTTTTGAAGGAAAAAAAATTTTCTGTAAAATGGCAATAAAATTTTTTGGG TCGGCAGGTTTTGAGGTAGGGTCGGTCGGGTGACGGCAAACCAACAATTT TTGAAGTCCAGCCTAATGATGTAAGTTTTATATTTAATTCATTTATTTCA GAAGATGCACTTGTCAAATATGTATGATCAACGCTTTCTGGGAAAACTTT CAATTTTGTGCTTATTAAAAGAATTCACTCATTCACGCAGGACTGGGTTT AAAAGGCCAAAAATCGAAATTCGACCCTTCGAGAGACTTTTCTCAAAGTT TTTGTCAATTTCCACTCATTTTTGAAAATCACAACCCTTTGAGAGAGGAA ATTTCGATCTTTTTTCGAGAGACTCATTTGCTTTTTGATGGTTTTTGTAC CCCTTTGAGAGACTTTCAAGGCTGTGAAAAAGGGAGCTTTATGGCTCGCA CATATCTGGGCACCCATTTTGCCCCCTCCCCCTCCCTCGGAACTTGATTT GCAATTTTCCCTAATCAGAGGGTATCTACTATCTATCTCCTACCTTTGCT TTCTGAATTTATTGATTTCCATCGAAATGACCCAATGTCAATCCACTCAT CAAAAATTGATATATTGATAACAATCACGTGCTTTGCTGCAAAATCCATT CTTTTGAGGTCAGCTGGTAAAAAATATGCATTTTTCTGCATGAACAGCAA ATAAAAGCAAAGCTGCACATTTTCTGTATATACACATTTTTTTTATCAAA TTCAATCGATATTATTATTGTTTTTTAACAGATTATTAATATTCTTCAAA TCCCGTAGATTGAAGTCCAAATTTAGTACTTTAGGCCAAGGTCTACATTA TTTTGATAATAATTGTCATTTTATTTTTATTGTTTGTTTTTCATGAACAA TTTTTATTGAGTTTGTACTAAAGTGTGAGTCTGAAGCAGTCTGGATTTGT TATCAGAGAATAGTGTTGTGATTTTATTTGCACACTTTCTGTATTCACTC ATATTCTTGCCAATTCTTTTAAAAAGTAATAAAATACTCATCTTCAGCAT GAAATTTACTACAAAACCATGGCTGTGTAGTTCGTCAATACTTGAAATAT GCTCTACACTTCTCAAAGTTGAGGAGGCTTACTATTTGCTGGTGGGTACA TATTGTTTTGTTAGTTTTTATAATCTCGAGATTATTTGGAGTTGTTCGGG GTTTGCTGTAAAAAATTCACATTCTATCAAAAGTCGAGCAGAATCTATTC CACTGTGTATAGATTTCTGTATGAAGATTTTAGTTGATTCAAGTTCGTTG ATTGATTTGTGAGATTGACTGTCATTTTGTCGGTCACTCATCAGAATTGA GGCTCTTTAATTTTCTTTTTCACTGTGAACTGTGTTAATAAGGTTTTTTA AATAATGACTAATATTTTCCAACTGAGTTCAAGATGAAATAACTTTTAGT AAAAGGGAAAATATTTCTTATTTTGAAAAAATTTATTTTCAAGCTCTTAC TGAATGAGAAATCTCAGCATTTAATTTGTTTTTAAAACACCTATTACACG GCATGGAGCGAACATCACAAACGGGTTGTTCCCAATTTTATATTGAGAGT TAAAAAACACTCTAGAACTAGAGAAATCTTTCCTTATTTTACATTGTCAA TACAACTTTCTATATTCTTAAAATCGCTTCTTTTTTTTAATTATTATTTT TCAATTGAAGATATTTTAAAATATGGGCGATTGAAGTGAGCGTATGTTTA TAACCCGCATGAAGGGAGAAAGAGTTTAAAATTTTACAGACTTCTGCTGC AGGTGCTTAGACAGATGAAATATTGAGAAAAAAATAATTTAAAAAGAAAA GAAAAAGAAAGAAAAAAGAGAGATAAAACCCAAAAATTTATGTAGTTTAT TCACATATCTAGCTTTGCAATGTTTTTCATACGAAGTGTAAAGAGATTTC TATAGGAGAGAAGAAAGATTTGGAATGTTTCGAGATTTGTTACATCGAGG GAAAGGAAGATTGATTTTGACTTCAGAATGTTAACAACTGAACATAATTA TGCGCATGGATTGCATAATTATTCCTTAATTACCATCTCTTTTGATAATT CCTGAAAGGGTTGGGATAACAGCTGTTTGAAAGATGGCTTATATTCTGAT CAGATGGTTCCAACTTGTTTTTCCATCATCTTTGAGCTTCTGAAAAGAAA ATATTCATCACGTTTGAAGATATTTTCTCTTTATTTTAAGAAGTGTTAGA TGTTTTCACTTTCAGTCAGCTCAAGACTAGACTGTAAAACCTCGTTCCTT TTGAGATTTTAGTTTAGTTCAGTTTCGTTCTATTATGACCATAAGGTATT ATTACGGTAGTTATGTATGTTTTATCACTATGCGTGTATGTTTTTGGGGG GTTTTTGTGATATTAACTTTTTGTATATATCAGCAAGATTAGTTTGGTGA TTTTAACGTGAGTTTTTTGCTCCGGCTATTTTGCCAATTAGCAGGCTAAA AGTTTGTATGCAGATAACAACCGATTGTGAATAAAGTCACATTAGACTGG GCGGAATAGGTTCGACTGTAATATAAAATATAAAGAAACCTTTGGCATAG CTATTCACGTCATAAATAGTTCCATGCTCTATAACCATGCTAACAGCGTT TAGCTCTGCTGATCTATATTTCTTTCTTTCGTCCAAAAGAACTTTCAAAG GGATGAGAAATTGGGTACCAATGTGTAGATTGATGAATAATGATTAAGTA TTTCATTACCATAATTATCGGTTTTCTTCATCTTCAGATCAAATACTAAC AAAAATGCCAGACTCTCCGGCCAATTTACCATCGGATGTTCCGCCTATTT CATCACCCGGTCATTTACGAATTCCGTCATCAGCCAGTCAGCTTTTGGAC GTGCGGACACCTATTTCGATTGCTACATCACTTCCAAATGGATATCATCA TCATCACCATCCAGCAAGCCCCAATCAACCTCTCTCTCCAGGCCTCTTAA ATGGTATGTTAACTTTTCGTTTTAGTTTCCCAAAGAACTCACTGACTAGT TAATTAGACTTACAACTTATAAGTGTTCCTCTTCAAACAAATGTCGAAAA TGCTTACCGCACTGGCACAACCTTGGTATCTTTCGAATCACTTCTATTAT TTGCACTTGTAAAATAATAAGTAAACTAAGACTTGATTATACTGTTTCAA TTTATTGATTTGGAGCATATTAATGGGAGACTTTAACTCTAGTTTTCCCA AGATTTTGATCATGGACAGATTTTTAGATGTTTGTGCAGGTTTGTGTGTA TCCTTTTGAATCTTTCCATCAGAGAACCGGGAACGTCCTTCGATGAATAT TCTCAAGATAAACCAACCAGGGACCTTATTCAGGCTCGGCCGTTCCAAGG CATGAAAAAATTACATTTCGCCGGTTTAAAAGTTTGGTTCGTCTCCTCAA GTACATATTTATGCTAATGAATACACTGGGCTCTCTAAAAACTCACTGGC CCAGAATCTAGAAATCGTCAGAGTTAATTTTTCATTCGCCAGCCTATCAA AAACAAAGCAAGACCCCTAACCAACATTTTTTCAGGTATGCAGTTACCAC ACACGTGTGCAACGAGACAACTGAGCAAATTGAAACGTTTTTTAACCACA CTCCAACAGTTCGGTTCGGATATATCACCGGAGATTGGGGAGCGTGTTCG TGGACTCATTGTTAACCTCATTGTAAGTAAATAATCAATTGAAAGTATCC ACAGTTCTTCTGTCTGGGTAAAGTATAAGAGTGTACGCCTGCCTTGGAAT TTACAAAATTTAGCAAAGTTCGGCGAAATATTAAAAATCTGGGCTAATTT GTCATGTTGAGTCCATTTACTGTTTGATATGGAACTAAGCTACTGAATTA AAACTTAACTTAACCGTGAAAATATATCACGCTTAAAAAATCCTTTTTGT GTGTATATCATATTCCGTATTCATCGTACGAAGTTAGCTAAGAAATTTAT GTCGTCAACCGAAAGTTTGTTATGATGGGTTGACGTAGTCTGTACCAAAC TCTTCTTCGCCGGAAAAAGAAACACAACAAGATTTTTTCAAAAGAGCAAA GATCGCCTGTGGGCACCAGAGTGGGATAGGTATAGGGTTGGCGTTATGTG TCAAATGATTTGGCCGATATTCAATTATGCCTTTTGTAGCTTTCATATAA ATTGATATTATTTTACAGAACAGCGGAATTTCAGTCGAAGAATTTCACCA ACAGTTACAGGATGCAACCAACTTCCCTTTACGCCCATTCGTCATTCCAT TTCTGAAGGTATTTGCTTCTCTGCTCGATCGAGTAGAACTTCTGCTTTTA TCATGTGTTTTCGGAGTTCGCGTTCTGTGAGTCCTGTACGGACTTCAGAA CATTGTCTCTTAGAGTTTTAATATGTAGATTATTTTTTTCATATTTCAAA ACTTTGATTTTTTTTAAATATGTATTACATCATGGCCACGGCCTAAGTAA CTGTATTTTATGTATTTCAATGAACTTCTTTCCCGTTTAGACGAATCTAC CCTTACTACAACAAGAGTTGTTGTCCTGTACTCATCTCTCCAAACGTAGT CCTCCTCCACACTCCTATACTGGTTCTCCACCGGAGAGCGAGCGTGAACG AGAGCGGATCAAAAAAGAAGCAGAAGAAGTACTTTTCGAACGCGTTGGAG AAAAGAGGAAAATGGACCATGAATCTAGGTAAGCATGGGTGGTCTTTTGT TTTGGTTGCTTAACATTTTAAAAGTAGGCATTTGACATTTTTGAGTTTTC TTCAATGCCCCGCATTTAGGATTTTTTTTTTGAAAAACATATGGGTTGCG TGCTCTGGATGGAAAATAAGTGGCTTCATTTCCCATCCAGAAGTTTCGGA TAATTCTATGCTTCGGGGCTTTGAAATCAATGGTGCAAAGAGCTATATCA TATTCTTCTTTTGAGGATTGGTCAATTTTTCTATACGAAACTACTATGAG AAGATATTGAAGGGAGTCAGTTGACCATCTTGTCATAATTTAAACAATAT AACATTTTTGGTTAAAGTTTCCTTTCCTTTTCATCGCGTTAAAAAAGGCG ACCGAATTTCTCTTTAATACTCACAACACCATCTGTCTGTTTCCCGCGTT AAAACTTTCGGGTTTTTCTTCTTGGTCACGGCAGATGTGAGGGGGATGGG ATGAAGCGAAAAAACAGGATCTTCAATTTCACCTGCCGACTTCAGTAAAC CCACATTTTCAAAATGTCTTTTTTTGTGAAGGAGATGAATTTGAAGTTGG CAGGTGTTTTTCTGGTCCTCACTTTCTACACTTCAGCATATGGTGTATGT TAAAATATTTTGGAATATTTTTTATTCCTTCTTTTTTCTCACCCACCTTG GTCGATCAGATGGTTCTTCTTCACTTCATTTTCAACATTCCCCATTCCTT TTCTGATGATTAAATTTTAATGAAAAGTGGCTAGTTTATTTTTACTCTCT TTCTTTTTCTTTCTATGCAGGTGTCTTAAAATCATAAACTTTCCTTTTTT TTTCCTTTCCAAGATTGTTACACAACACGATTTTTAAAAACCTCACCAAC TATGATTTCTTTTAAGTGCAGGTGCAAAAAGGATTCGTTATTTTTCGATA TTTGTAACAGTAACAGACTCTCTTTGAAGAACAATGGTATTGAACAACAA ACAAAGGGATAATTTTATGTTAATCTTTCCTTTGCCTTTCCTATTTAACC ATTTTTCCTTCAAAAATACACAGAAGATCTCTGTTTAATAACAATTGTGC AGCAGACATCCAAAAACTGCACAATACAGCTGCAGTGCTTCAAAAAATGT ACTCTCCAAAAATCAGAAAGTGAAAAACTCATAGCTTCATTCGCTTGCAT ATCATCGTCTGAAGGTTTCTAAAACAGAGTTAAAAAGAAATTTTCGTAAA AGAAATTATTCTGATTCATTAAAAAAGGATAAAAACATCTATCAAAAAAT CCGGTCCGTTGTCACCTCCTCAAAGTTTGGAGAAGAACAACAACTTTAGA TAGTGCCCATCGAACCCTCGAGAATCTCTTTGTCGACTTTTTTATCTTTT AACGAATTTTTCATATCTAGAGAGATAAATTTCCTTAAAAACAAAAATAA TTGTCCTTCAAAAAAGCGACACATAAATGGTCATGTTTCCTATCCACAAT TTCATTAAATCTGTTTAAGTAAACAGATGAATTCATCATTCAAAGAACTA TTTCCTTTGAAAAAGTTGAACAATCATCTTGCTTTGAAAGGGACAGATAA ATTGTCAACTTCATATACACAGAGAAACAAATTTTCCTTGAAAAATACAT AAAAATGATTGTCGGGACAGAGAGGGATAGAGAAATCAGTTTTGTTTCTA CAGAGAATTCAGTGAATGTAGAGAGTCCCTCGCCATGCTATCCTAACGCC CTGCCTGGTAATGCTTAGCCCGGGGGCCACTTATAGTTTTTTGATAGACT GAATGGCGCTGATAAGTGGCCCGGTGTAATTTTGCCGACTCGATATTTTG GCTTTGCTTAAGGAAACGCTAATTTTCCTTAAAGAATACATGAAAATAAT GAAGTGAATACAGTCGCTCTCGTGTTGTCTTCTGACCAGCCACCAGAACC GCTGGAAAACCAGCGGATCCGGCGAGACTCGAACTCACAACCATGAGGAG CGACTGTATTCACTTCATTGTAATACAAAGGGCAAAATTCATGATACTTT CAAAGGGAAGGAAAGGGACGGATAAATCAGATTTCCTTCTTTAGAGGAAC TAATTTTCCTTGAAAAATACATAAAAACAATGATTATTTTGTTCCTAAAA TTGCATAATGTAGCTTTTCTTCCGATTCACTTTAATTTGAAGATTGAGTT TAGAGTTTAGAGATTTTAGAAAGTTGCATTTTTTATGATTTCTTCAGATC GAAAGAGAATGGGCACCACTTGGATTCATTCGGTCTTCCATCGCCCAACA AAAAGAAGCATTTCACCTCACCTGGTTACGAAAGAAACGAAGAACGAAAC CCCATGGTGGATCAACTCCTCGAAAACTACAAACAAGACACCGAAGATTG GCGTAATATCGAAACCATTCTACAGTGTATCGTCACGTTCGTTGATAACG CCAAACGTTCCGTTGCCGCTATACAAGAACGATGTATACGCGACCGCGAG GAGATGGCTTCATGGGCGCGCGCAATCACAGCGGACGCAGAAAACGAAAT CAAACGTAGAGCCAGTGAGTAGAAAAATTCTTTTCGGTGAAATTGGAGCG TTCACGCTTCGAAGAATGCTTTTGGTTTTTCCCAAAATAAACGCTTATTG ATCCACTTCAGTTGTAGAAACTGGGAAATAACCTCTGTTCATGATCAATG TTTGCCATATTGATAAAAAATAAAAACAACATTTAAAATTAGCAAAAGCT TTTCGGTCTTTCCATCATCAGTGCTATAGAATAGTAAAATTGAAAATCAA AAAATATCGCGATATCTCATGTTCATTAGAGGGTTCGTCGGTTTTTTTGA ATGCGAATGATTTGAAGAACAGGTCATTCAAGCTCTGTAAGTCGATATCT ATAACTCGACTGGCTCAATAATTAGAAAATACATTCTGGTTGACTCTCTT ATAAANGTTTTAATAGTATAATAATGCGAATGATTTGAAGAACAGGTCAT TCAAGCTCTGTAAGTCGATATCTATAACTCGACTGGCTCAATAATTAGAA AATACATTCTGGTTGACTCTCTTATAAACAAGTCCCTGTAACTCGACCTC CATAAATCGAACTTTTAACTATTTTACTGTTTTCCCTTCAGTTCCCTTGC ATAATTGAGTCGCATGGGCTCTACTTTTAAATTTTGAATTGAAAAGGATA TGACTGACATTCTTATTTCATCTACAGACGAACTAGTGACGAAAGCGCTG AAGCAAACAGACGACCGCGTGAACGAAGTGAAAAAGCGAGCGGAAGATGC TGTATCAGATGTTAAACGTCAAGCCGTCGTCGAACTCAAAAAAGCCGTCA ACGCGGCCGAAGAGAAAGCGAATGACGCCTTAAGTTTAGCCAATCAACGC ATGGACCAAGCAGTTCAAGAAGCAAGGCGTAAAGCGACGGAAGAAACGTC GAGTATCATCAACTTGCAGGATGCTTCTAAAGAGGTTTGTTCGTTCAAAG TTTATTTCATACCATTCTACACTCCTGCCTCGTTTTCCTAATATACTTTT TCATAAATTACGTCACGAACATCACTTGCCTCGTGTTCAAACAATTACCA TGGTGATTATGTCCCTTGAGACATTGAATGATTCTTTTATGAATAGGAAA TGGTGTTAATAAAATCGGATTTTCGGAGAAACGATGAGCTTATTTCTTAG ATATGACTTAGTCTATTCCACAGTCTACCAGAAGCTGCCTTTGGGTGTAT TTAAAATCCTGATATTTTTTTCATTATAGAACTGTTGGAATTGTGGGCGG AAAGCAAATGAGACATGCAGCGGGTGCAATCACGCCCGATACTGTGGTTC TTTCTGTCAACACAAAGATTGGGATACACACCAAAAAGATTGTCCGAAAC TCAAACCACAACCCCCGTCTCAACCTCTACAACCACAACAACCACAACAA CAACAAATACGTGAACCGCCCGTGCGACCGAAATCTCCGCTCGTCATCGA ACGCGTGCAAGATCAACAAACAGTAACAAGTAGCGATGAACGGAACAGCC CGGTAACCGGCGTCAAACCAGCACCTCTACCTACGGAAGTACCCGCCGTC ACACAACCTGTTTCTCAACCGGTCGTTGCAAATGAAGCTGTATAGTTTTC ACTTTGTCTATGTTTTTGTTTACGGAGTATTTCGTGTATGTAGTTTGTTT TTTCGTATTATGTATGTATTAAACAGGGGGAAATGGTTTGGGAAATTTTT ATTTTTTATGATATTCTTTATGAGCGTATTATTTTTTGTACATATACTTT TGTTTTCTTGATCGACCACTGTAAATATAAAGAAAGACGGTAAAATGTCT GCCATATTTGTTTGATTCTCGATGGATGACGTCATTCGGACACTTTCGAA TTTTGTATGGCGCAATGTTGCAGGAATATTTTGCAAAGGATTCTGGACGA ACTATTACAAGCTTGCGTTATGATTGGCCAATATGAGAATTTGTTCTAAA TTCGATACTAGACCTCTTCATTTCGATTGTGCTTTAAAATAAAATGGTTT TTTTAGGAAAAAACAATCTAGGAACGAAGTGAGTAAACAATGCAAGGGTC GCTTTTTCCGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013530XLOC_013530Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024085-exon-sc0000474-1575043694:101054..101243TCONS_00024085-exon-sc0000474-1575043694:101054..101243Clytia hemisphaericaexon
TCONS_00024085-exon-sc0000474-1575043694:91022..91956TCONS_00024085-exon-sc0000474-1575043694:91022..91956Clytia hemisphaericaexon
TCONS_00024085-exon-sc0000474-1575043694:90436..90525TCONS_00024085-exon-sc0000474-1575043694:90436..90525Clytia hemisphaericaexon
TCONS_00024085-exon-sc0000474-1575043694:90016..90203TCONS_00024085-exon-sc0000474-1575043694:90016..90203Clytia hemisphaericaexon
TCONS_00024085-exon-sc0000474-1575043694:87480..87796TCONS_00024085-exon-sc0000474-1575043694:87480..87796Clytia hemisphaericaexon
TCONS_00024085-exon-sc0000474-1575043694:86560..86816TCONS_00024085-exon-sc0000474-1575043694:86560..86816Clytia hemisphaericaexon
TCONS_00024085-exon-sc0000474-1575043694:85431..86264TCONS_00024085-exon-sc0000474-1575043694:85431..86264Clytia hemisphaericaexon
TCONS_00024085-exon-sc0000474-1510915933:101054..101243TCONS_00024085-exon-sc0000474-1510915933:101054..101243Clytia hemisphaericaexon
TCONS_00024085-exon-sc0000474-1510915933:91022..91956TCONS_00024085-exon-sc0000474-1510915933:91022..91956Clytia hemisphaericaexon
TCONS_00024085-exon-sc0000474-1510915933:90436..90525TCONS_00024085-exon-sc0000474-1510915933:90436..90525Clytia hemisphaericaexon
TCONS_00024085-exon-sc0000474-1510915933:90016..90203TCONS_00024085-exon-sc0000474-1510915933:90016..90203Clytia hemisphaericaexon
TCONS_00024085-exon-sc0000474-1510915933:87480..87796TCONS_00024085-exon-sc0000474-1510915933:87480..87796Clytia hemisphaericaexon
TCONS_00024085-exon-sc0000474-1510915933:86560..86816TCONS_00024085-exon-sc0000474-1510915933:86560..86816Clytia hemisphaericaexon
TCONS_00024085-exon-sc0000474-1510915933:85431..86264TCONS_00024085-exon-sc0000474-1510915933:85431..86264Clytia hemisphaericaexon
TCONS_00024085-exon-sc0000474-1491911889:101054..101243TCONS_00024085-exon-sc0000474-1491911889:101054..101243Clytia hemisphaericaexon
TCONS_00024085-exon-sc0000474-1491911889:91022..91956TCONS_00024085-exon-sc0000474-1491911889:91022..91956Clytia hemisphaericaexon
TCONS_00024085-exon-sc0000474-1491911889:90436..90525TCONS_00024085-exon-sc0000474-1491911889:90436..90525Clytia hemisphaericaexon
TCONS_00024085-exon-sc0000474-1491911889:90016..90203TCONS_00024085-exon-sc0000474-1491911889:90016..90203Clytia hemisphaericaexon
TCONS_00024085-exon-sc0000474-1491911889:87480..87796TCONS_00024085-exon-sc0000474-1491911889:87480..87796Clytia hemisphaericaexon
TCONS_00024085-exon-sc0000474-1491911889:86560..86816TCONS_00024085-exon-sc0000474-1491911889:86560..86816Clytia hemisphaericaexon
TCONS_00024085-exon-sc0000474-1491911889:85431..86264TCONS_00024085-exon-sc0000474-1491911889:85431..86264Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000474supercontigsc0000474:85431..101243 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.4637 22.1046 14.2474 12.2853 36.733 29.7791 44.684 46.9748 16.6275 23.9371 8.78194 1.35811 0.54296 0.270717 0.252629 0.72216 1.44843 1.03894 9.74931 9.91905 5.20611 9.0189 17.5764 17.1652 19.5064 18.7556 9.90269 8.82786 11.3077 12.8336
Blast
BLAST of TCONS_00024085 vs. Swiss-Prot (Human)
Match: MTG16 (Protein CBFA2T3 OS=Homo sapiens GN=CBFA2T3 PE=1 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 8.018e-79
Identity = 172/442 (38.91%), Postives = 241/442 (54.52%), Query Frame = 1
Query:  973 TNIFSGMQLPHTCATRQLSKLKRFLTTLQQFGSDISPEIGERVRGLIVNLINSGISVEEFHQQLQDATNFPLRPFVIPFLKTNLPLLQQELLSCTHLSKRSPPPHSYTGSPPXXXXXXXXXXXXXXXVLFERVGEKRKMDHESRSKENG-----------------------------------------------HHL-DSFGLPSPNKKKHFTSPGYERNEERNPMVDQLLENYKQDTEDWRNIETILQCIVTFVDNAKRSVAAIQERCIRDREEMASWARAITADAENEIKRRA---------------------NELVTKALKQTDDRVNEVKKRAEDAVSDVKRQXXXXXXXXXXXXXXXXXXXLSLANQRMDQAVQEARRKATEETSSIINLQDASKENCWNCGRKANETCSGCNHARYCGSFCQHKDWDTHQKDC 2091
            T   S   LP  C  RQLSKLKRFLTTLQQFGSDISPEIGERVR L++ L+NS +++EEFH +LQ+ATNFPLRPFVIPFLK NLPLLQ+ELL C  L+K++  P  Y     +   +           L   V E  K     R+KENG                                               HH  D++  P P + +    P       +  ++D  L   ++  E+W+++  +L CI+  V+  +RS+  ++     DREE+  WAR  + DAE+  K  A                      E + + L  T     ++ ++AE+AV++VKRQA+ EL+KAV+ AE KA++ ++    +M++A+ EA+R+A+E+  ++IN Q+ S E+CWNCGRKA+ETCSGCN ARYCGSFCQH+DW+ H   C
Sbjct:  157 TASLSTQHLPPACGARQLSKLKRFLTTLQQFGSDISPEIGERVRTLVLGLVNSTLTIEEFHSKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARLAKQT--PAQYLAQHEQLLLDASASSPIDSSELLLEVNENGKRRTPDRTKENGSDRDPLHPEHLSKRPCTLNPAQRYSPSNGPPQPTPPPHYRLEDIAMAHHFRDAYRHPDPRELRERHRPLVVPGSRQEEVIDHKL-TEREWAEEWKHLNNLLNCIMDMVEKTRRSLTVLRRCQEADREELNHWARRYS-DAEDTKKGPAPAAARPRSSSAGPEGPQLDVPREFLPRTL--TGYVPEDIWRKAEEAVNEVKRQAMSELQKAVSDAERKAHELITTERAKMERALAEAKRQASEDALTVINQQEDSSESCWNCGRKASETCSGCNAARYCGSFCQHRDWEKHHHVC 592          
The following BLAST results are available for this feature:
BLAST of TCONS_00024085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MTG168.018e-7938.91Protein CBFA2T3 OS=Homo sapiens GN=CBFA2T3 PE=1 SV... [more]
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