TCONS_00024078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024078
Unique NameTCONS_00024078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2913

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024078 ID=TCONS_00024078|Name=TCONS_00024078|organism=Clytia hemisphaerica|type=transcript|length=2913bp
ATCTTGAGCCATctacatagatttataaaaatttatatattttctgaaaa
ggACTTTTACCGCTAGATCCTCAGAACAAAATATCTTACCATAAGGTAGT
GACTTTGAGATTGCTGAATGAACAGAATTGAACCACTGTGATGCAACTGC
ATTTTCttttgctctcaaaattgctgCAGATCTTCCATCTggtgtaaata
tttcaaaagcttTTCCATCATTTTCCATACCATTTACTGAAACATGTTTC
GTTAAGTAGCATAATTTAAGAGGGatctttttaagttcattcCACGCTTT
TGTAGCATTTGCTTCTTTTGGACCAGAGCCAGATTCCCAACTAGACTGCG
ATGTTGATCTTTTAAAATATGGAGTAACTTCCTTTAAATATTTAACAGTA
AGTTCAACTTCTTTTCCTGCCTTCTTGAGAGCATTAACAGCTTCATCGTG
AGTTGCATTACGTAAATCTTCACCATTCACTGCTAAAATAGCATCACCCA
TATATAAAGCTTCTGTTTGTGCAGCAGCAAGTccattaaaaatttttgaa
atcaaaataggCATTTTATTTTCTCTACCACCCTTAATACTAATCCCAAG
TCCTCCAACATCTTGCTTGATAACTCGTACAATACGAACTTGATTTGCTA
CATGATCTGGAACCTCGACATCCCCAACACTGCTAGTTGAATCAAGAGGT
CCATTTCTCGGGTCTTTTGGACTTGCCGGAACAGAGCCATTCATTAAATG
ACTTTCCTCAACACTTAATATAAGAGTTCCATCCTCTAAATTAACAAGTA
CTTGCCTCCAAACACCATCGTGAAAAACCTCCATGATCGCACTCCTTATT
CCCTGTTGCCCTGCCGCCATCTTCTTTCGATCTGTGTATTTATGTTTTGT
TCACTTCGTTGTTTGCCTTGTTTTATTTTATCAGATTGCGATGACTTTTT
AAAAACCAACACCCTAACAAGTGATGCCAAACACTTTAAATTAGAAGTGC
CttaataagaattttttgtaAGATATCCAGAAAAGGGGATCTTTCCTTTC
ACTTCAAAGAAGACTGGTACGAAAATTGTTTTTCcaagaagagaaaaaca
aaacaatcttcAAGATTTTTACTACTGACATCTGCGGGGGAGGGTCGAAC
ACTCCGGAGAATCCGGTTTAAATCGGGTAAATTTTCGGATTTCctccaaa
acaaaaaacatttggAGGGCAAGGTCCAACCTCACTGACCAGCCGGTCCA
CTCTCTTTTTCATTTCCAACCCCACCACCACCATTTTGAgTTACAACAGA
ATACAAGAAACATGCTTCCTTCAGTCGGTGTATTTGGCACAGACCACCAA
GCTCAGATTTTAATTGCATTGTTCAAAGCTGCTGGATTCCCTGTCACTGC
TATTTGTGGTTCTACCTACGAGAGTGCGAAATCACTAGCTAATGATTTGA
AAGTTGCTTTCCACACCAATAAGATTCAAGAATTGTTGCTTCATAATGAA
GTGGATATTGTTTGTGTGGCTGGTACACCACATCAATATGCTGAAGTCTG
CACTAAAGCTCTCTCCATCGGCAAACATGTTTTTAGTTCCACTCCAGCAG
GTTTAACACTAAAGGAAGCAAATGATATGCTTAACAAAGCACAATATTAT
CCTAAATTATTATCTGTCTTGAACCATCCTTTGAGATTCCTGAGTGCTTA
CTCAGAAGCAAAAAACTTGATCAAGGAAGGGAGAATCGGTGAGATCTTGA
TATGTGAATGTCGTATACATATCAAAAGTTTGATTGGTAGTTCCTTTGAT
TGGCATTGTGACAGTACCATGGGTGGAGGGGTGTTACAAACATACGGAAG
TCACATTGTTGATATCTTATCATTCCTTCTGGAACAAAAAGCTACACAGG
CACATGGTATCCTCGAAACATTTGTCAAACAAACCGATAAAATGCCCAAT
TTCCGACAAATATCAAGTGATGATTTTTGTTCCTTTCAATTGAAATATCC
AAGTGGGATAAGAGCTTGTGTTACATTGAACGCTCACATGCCGAACAACT
TCGTACAAGAGGTTATGTTGGTTGGTAGTAAGGGATTCTTGAAAATTGTG
AATTGTAATTTATATGGACAAATTAGTGGAAGTGATACCGTTGAATGTTT
GTATACAGAGGAGCAAGGTGACCGTTCACTTTATAGTTCGTTTGAAGATA
TCCTTCCAGGGATGTATTTACTTGGTTGTGAACAGTTGATTGAAGGAATC
AAACTAGCCTTCGAAAGCACTCAGTTGATGGGTATGGACCAAAGCACCGA
CAGACGAAACGCTGATATCAACTTGATTACAGCTGCAGCTAACTTTGAAA
ATGgtTGTTATACACGGTCTGTATTGGATGCCATCTTCGAATCGAACAAA
CAACGCCAATGGGTGGAAATCAAACAACCAGGTGAAGAGTTCAGAGATAA
CACTTTTTGGAGTTCCAAAGAATGTTCATTACAACAAAGTGGGATGAATA
ACACCGACAACAGGGTTCTGAAGCCCAGAACGGATACTCAAAAACAACGC
TCTTCTCCTCACGTCTCCAAAAAGAGATGAAAGAGATGCATGTAGTCATA
ATTCGGGGTTCTTCTGAATGTGATGGTAGAATGTTGCCCATTAGCCAGCC
ACAAGACCTTGTTCTGTTGCTAGGGAACAATCTTTTTAACCGATTTTATC
TCCTGATGTCTATGAACCAAGAAAGTGAATAATTGTTAGTTAATTTGGAG
AacaaaaaaaagacaaaggCTAACTTCACTTTGAAGTAAATTGGAAGGGC
GGATGGCATTGACTCTTGAGAAAACGTGTAtcgtctttttttcttctttt
tgtataTATTGAATTCtgcataaaattgaaaatgccGTTAAGaattgctt
gtttttatttgcC
Run BLAST on NCBI

protein sequence of TCONS_00024078-protein

>TCONS_00024078-protein ID=TCONS_00024078-protein|Name=TCONS_00024078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
MLPSVGVFGTDHQAQILIALFKAAGFPVTAICGSTYESAKSLANDLKVAF
HTNKIQELLLHNEVDIVCVAGTPHQYAEVCTKALSIGKHVFSSTPAGLTL
KEANDMLNKAQYYPKLLSVLNHPLRFLSAYSEAKNLIKEGRIGEILICEC
RIHIKSLIGSSFDWHCDSTMGGGVLQTYGSHIVDILSFLLEQKATQAHGI
LETFVKQTDKMPNFRQISSDDFCSFQLKYPSGIRACVTLNAHMPNNFVQE
VMLVGSKGFLKIVNCNLYGQISGSDTVECLYTEEQGDRSLYSSFEDILPG
MYLLGCEQLIEGIKLAFESTQLMGMDQSTDRRNADINLITAAANFENGCY
TRSVLDAIFESNKQRQWVEIKQPGEEFRDNTFWSSKECSLQQSGMNNTDN
RVLKPRTDTQKQRSSPHVSKKR
Run BLAST on NCBI

transcript from alignment at sc0000474:15067..23902-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024078 ID=TCONS_00024078|Name=TCONS_00024078|organism=Clytia hemisphaerica|type=transcript|length=8836bp|location=Sequence derived from alignment at sc0000474:15067..23902- (Clytia hemisphaerica)
ATCTTGAGCCATCTACATAGATTTATAAAAATTTATATATTTTCTGAAAA
GGACTTTTACCGCTAGATCCTCAGAACAAAATATCTTACCATAAGGTAGT
GACTTTGAGATTGCTGAATGAACAGAATTGAACCACTGTGATGCAACTGC
ATTTTCTTTTGCTCTCAAAATTGCTGCAGATCTTCCATCTGGTGTAAATA
TTTCAAAAGCTTTTCCATCATTTTCCATACCATTTACTGAAACATGTTTC
GTTAAGTAGCATAATTTAAGAGGGATCTTTTTAAGTTCATTCCACGCTTT
TGTAGCATTTGCTTCTTTTGGACCAGAGCCAGATTCCCAACTAGACTGCG
ATGTTGATCTTTTAAAATATGGAGTAACTTCCTTTAAATATTTAACAGTA
AGTTCAACTTCTTTTCCTGCCTTCTTGAGAGCATTAACAGCTTCATCGTG
AGTTGCATTACGTAAATCTTCACCATTCACTGCTAAAATAGCATCACCCA
TATATAAAGCTTCTGTTTGTGCAGCAGCAAGTCCATTAAAAATTTTTGAA
ATCAAAATAGGCATTTTATTTTCTCTACCACCCTTAATACTAATCCCAAG
TCCTCCAACATCTTGCTTGATAACTCGTACAATACGAACTTGATTTGCTA
CATGATCTGGAACCTCGACATCCCCAACACTGCTAGTTGAATCAAGAGGT
CCATTTCTCGGGTCTTTTGGACTTGCCGGAACAGAGCCATTCATTAAATG
ACTTTCCTCAACACTTAATATAAGAGTTCCATCCTCTAAATTAACAAGTA
CTTGCCTCCAAACACCATCGTGAAAAACCTCCATGATCGCACTCCTTATT
CCCTGTTGCCCTGCCGCCATCTTCTTTCGATCTGTGTATTTATGTTTTGT
TCACTTCGTTGTTTGCCTTGTTTTATTTTATCAGATTGCGATGACTTTTT
AAAAACCAACACCCTAACAAGTGATGCCAAACACTTTAAATTAGAAGTGC
CTTAATAAGAATTTTTTGTAAGATATCCAGAAAAGGGGATCTTTCCTTTC
ACTTCAAAGAAGACTGGTACGAAAATTGTTTTTCCAAGAAGAGAAAAACA
AAACAATCTTCAAGATTTTTACTACTGACATCTGCGGGGGAGGGTCGAAC
ACTCCGGAGAATCCGGTTTAAATCGGGTAAATTTTCGGATTTCCTCCAAA
ACAAAAAACATTTGGAGGGCAAGGTCCAACCTCACTGACCAGCCGGTCCA
CTCTCTTTTTCATTTCCAACCCCACCACCACCATTTTGAGGTATATTTCA
TATTTTTGGAGCAGTGTTTTAGATTTTGATTGCTTTTTTTTATCTATATC
ATATGTGAAATTCTGTGTGTCGATTGCATTGGTGTACAATTTGAATTTTT
TTAAGCAAAACTGATGAGGAGACAAGAGCCCAAACTTTCGACCATGTGAT
GTCAAAATTAATCAAATTTTCCATTTCTGCCTTGACAGTAAACGTGTTAA
CATCATCGTATTTATTTTCCATTATTTTCATTGCATTGCTTTTCATTGCA
CATTGGGCTATTTCATTTTTAAACCAGCAGACACAGTACAGTGACATGTG
TATAGACCTTTTTTTAAAGAGGGGACCCTGTTGAATAATTAAGGAGTCCA
GCATAAAAACAATGATACAGTCATGCATAATTACTGTATCATGTGCATAT
TGTAATAATTATGCATGGCTATATCATTGTTTTTCTGCTGGACTACATAA
TTATTCAACAGGGCGCGCTCTTTAAAAAAAGGTCTATTGACAAACATTTT
CAGTCTGGCTGGATGGGGAGGACTGAACTTTGATTTTCCAAGGGATTTAG
TCCTGGGGTGCACTTTTATAGTCTGATCCACGACATGTGCCACCCTTAAG
AATATAGGTTTTTCAAGACCCTCGAGAATCGAAATGCTGTAAGGCCAGTC
CGGAAAGAAGAGAATATTTACGCCAGAGATTTCTTGGCGTAGCCTTTGTG
TAAGTCTATGAAATCCAAAGTCTGCGCCGGAGATATCCGTCGTACATGCC
TTTCTTTCCAGATTGGCTGTAAGGGTGTGTACTTTTGCACTACAACAGGT
CTTCTTTTAGCTGAATACACTGTAGGGTGTGTTTGGGGACTTACTGAACT
GAATTGCAAGTCTGACATTAGAAATCTGATGTATCTTTATATTTTTGACT
CACACCCATTTTGATTTGTTTTGTACATTGTGTCAAACATCTCTGGCTCA
TTTTTAGGTGGCTTCAGCAAAATAAGATATGAGATCAAACTACATTTTTT
TTTGGGGGGCACATGCCGTCATTTAGAAATTGAGCCCCCCCCCCTAGGTT
TAGTACATTTTTCATTATTTTCCAAGGGGATCATTGAAGGTTTCCATGTC
CAAATAAAGGTCATCAACAATTTACAGGGGAATCCTGCCTCATAAGCTGG
GATCAATAGCTGTCAATAGTTCTCCAGCTTCATTTTCACAAAATTTTACT
TTAACTTCGTGCAATATTGACATATATACCTTGGTAATTCCACCATACTT
GACGTTACTAATCGATAAAATCGATAACTAATCGATAACTAATTGATGGA
TTAAATATTATTAAAACGATAATCAATAAATAATCAGCACCTAAAAAGTT
GTAAGTATCGATTATATCGATCAGATATAAGATATAGATTTCGAGTTTCA
TCGATATTACCGTGAGTGGTCCTAAATCCGACAGCCCTGCCTAAATCCGA
TGGGGTCTTTCAAAGATTCAAACTAAAATAAAAACAAACCTTTCCCTGTG
ACGCAATGAAGATACTAAAGTGTCAACTAAACTGAGAGATTTGATACACT
GAACCAATTGAACCTAATAACAATAATTGCTTCTTATACAAAAAAATATT
TTTTTATTACAAAATTGTTAACGTTTTAAACTTGAGCAACGGGTTCAGAA
TAATAGAGGTAATTATTTTTACAACTCACACTTTTTTGATCACATTAATT
GTCATCTTGACAGTATAGTCATCTTGTTAGATGTTCTGATGTTTTGTTTC
GAGAGTTCTTGCAATAGTTTATTGTTCAACTTGGAGAAGGAATGTTTGTA
AATATAGAATCTTTTTTCATAGCAGTTATTTGGGGGGTCGGATTTAGGCA
GGGCTGTAGGATTTAGGACCACTCACAGTATTGATTAAAAATCAATAGGG
TCGAGGTATTGATTATGTCGATATTAATCAATATTATCAATTATTAACAC
TAATCAATATTATCGATAAAAAATCTATGGTAATAATTTAATTGAGTGCT
AAAAAATTGTGAGTATCGATTAGCTATCGATTATCGTTTGTAATCGATAT
TTAATCAATCGATTAATTATCGATTAGCTATTGATTTTATCGATTAGTAA
TGATAACCATAGCATCTATCTGGTGTGCAATTTACCTTAATTTGGTTTAA
TGTCAACTTCCCTCATCTAATTCCAACACCTTTTTTATCAGCTGAAATTG
ATAGAAAGGTTAAAAACTATTTTTCTTTCCTTAGTGGTCAGAGAGCAATA
ATCCTTTTTCATATTATTCCTATCTTTAATATAAATATTTTTCCACTCCG
ATCGCTAGCAAGGAAAAATAGTTTCCATCAGCAATTCCAACCTTCTTATT
ATTCCTATCTCTAAAGATGGGTGATAAATTAGAAGAGTGATGTCAGCACT
AGACCAACTTATGGTAGTTACAAGTAGTTAGAGTGATTTTTTTTAAACAG
CTTACTCAGAAGGTTTTATATGAACATTTTAAAGACCAGATAGTTGCTAT
GATGGAATTAGACAAGGTATGTCAGCATTACACAAAGCTATGGTACTTTC
CAGAGGAAAGAAACCTTTGCTGTTGTCAAGTAACTACAACCCACACAAGA
TATTCCACAATGCCAATTGTAAAAGCAAATAGGTCATCTACCTACGAGAA
TGCCAAATCTGCAAGATCCAATATGTTGGTAAGACTAAAACTCCTTTCAA
TGTCTGTTTAAACAACTACAGACAGAAGTAACACACTTCACCCGAAAGAA
GACACCATTCCAGCTAGCAAACACTCACCAATATTTGGCATAAGATTCAA
CTTACTTACTGCACTTAGATTCCACCTACTTTTCCGGGATATGTCTGCTT
ATTTTGGGGAAAGAACCGGTATGAGCTTTAAAAGGGTTTTTTTCTAAAGG
TGTAACGTGGCATTTTGTGGTAGTGGAATCTTATGCAAAACGACGGTATG
GCAGCTTAGTGGTGTACCTTTTGTCACAATTTTGTGATGTGATCTTTTGA
CATTGAAATTTTGATTTGGCAAAGCTGCTGCGTAGGGTAAATAAAAGCTT
CTCAATGGAAAAGGCTCTATTATTAATGTTTAGGGGGTAGGTGTTTGGCT
GGTATGTCCAATAGTCATGGATATCCTTGCTATTGTATGGGGTTATTCGC
AACTGCAATCAGTTACAAAATGCAAGGTTAAAAGCAATAGTAAAAAATGC
CTTTTGTAATTTCATTGGGTAAATCATAGACATATGAACAGTGAGAAAGA
CTCGCAATGGCTATTTTCTTTTGTTCTAGCCGTACATGTTGAACTGGTGG
TACAATTCATAAAAAAAATCTTTCTCTTTTGTTAAAATTTTGATTGATAA
GAATGTGGCGTAACCATACCTTTTGTTTTTAAAAATGCCAAAAATGCCAG
AAATCTCTTAGAAACCTCACAAACTGTACCAAACAAACTTTTAAACAGCA
TCTTGACCAATTCCTCAGTACACTGCCAGACGAACCGCTGCTTCCTAATT
ATTTCAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCAGGAGAGCTGACTCT
AACAGTACAACAGTAATGGTCAATCATCGGATTCAACGAATTGGATGAGT
ACCATAAAGTACATAATCAATAACGAAGTATCACAAAGAAGTAAGTAAGT
TTTGCGAAAGGGGAGATAATTATGCGCGAAAGTATGAATAAATTTTCTTC
CATGAATTTGTAATTTTTGTGTTTGTAAATCAAATATTTCAGACAGAAGG
CTTTTTGTCGATTTATGGTAAAAATCAGGAAGCATAACATATAGAAAACT
TCCAAAAAACTCTTGCAAAATTTAATTTATGAAGCAAAAGTTTTAAGTTT
GTTCTCGATGGTTTTACTTGGTTTTACCCGTAACTCATTGATTTATATTG
CAATTTTATGTTTAATTAAGTGTATTCAGAACATTTAATTTTATGGATTA
AAACCTCCCAATTACTTATTTTCCATGTTAACAAAAAAGGCTACAAGCCT
GGATTGACTGATAAAAAAAGTTGCATTCACAAAATATCACTAATTATGCA
AAAAAAAATAAAGAAAAAAATTACTGACGAAAAATACTGTAACTTTGGAT
AGGCAAATGGCTAGACATAAAAATTTGGACGGAAGCTACCTTTAATCATT
GTTAATAATATATTCTATAGCCTTTTTGTAGCCCTTTGTAGTTAAGAAGA
TATGTGCTAGAGAATACGAAATACCTCGAAAACTGAAGTGTTATATATAT
TCAAGTATGAATATCTCCTCTTGTAATCAGTGAAAACTCCTAATTCTTTC
TCCCAGTGAAAACACAGGAAACCTTTGACAGATTACAATATTATTCAGTA
TTATTTGCTATTTGATTACTTAGGAAAACCCACTAAATTTTACTGTAAAG
CAAGCAACACTCTCTAAGAAAAACCCAAATGGCATAATTTAATTTATGCA
TAAAAAATGTTGTTTATGCGCAAAAGAGAATGAGTTTTAACCGTATCGCT
TCAGGACATATTGTTCTCGGAAAACAATAGGATTAACCATGGCAACCCGA
GCTTTGTTGTGATTCTTTCTTACTGTTCATATGTCTATGGGTAAATGAAT
AAAATTGTATTGCAGAAAATTGGATAGATGAATTTTTTTCAATGGGGTCA
TTTTTTCATCGAAGATTATTTTGTAGAAGTAAAAGAGGAAGCTATTTTGG
ATCTAAATAGCATGTTTTAATTAATTGGCATGTGCCCAAGATATCCTATC
TCATATACACTTGGTACTGCTTGGTATGGAAAATCTAATTTTGAACATTT
TGCTGGTCTTCATTTGACGTCATCACTTTGGCTGGGGCTTGAAAATGAAA
GGGAAAATTAGAAGCTCATATATGGCTCAAATGAAAGATATTTATTTAAG
GATTTCAAAAAATATCACAACATATACCTGAAAATCAATATTTGAGAAGC
TATAAAGAAAATTTGCTAAACAATGACGTCATCAATGAGATCATCGGCAA
TTAAAAAATCATCGAAATCAAAAAATTTTTGTTTTATTTGAAAGAGATTT
GAAAGATCTTTCATTTGAGCTATATACGAGCTTCTAATTTTCATTTTCAT
TTTCAAGCCTCAGCAAAAGTGATGATGTCACATGGGGACCAGCAAAATGG
TCAAAATTTTTCTCACCACACGTTTTAAATAAACGTTTGAATAGAGGGAT
ACTTTATCAGATTTCCATGCCTAGATCTTGAGATATTTGAATCTGAAATT
TTTGGCGTTTTGGCCCTTTTCTGTAACTTTTGAAATCTATGTTTTACAGG
TTTAACTTAAAGTTTAAGCATAAATCTAGAACAAAAAGTCGTTCAATACT
CTTTCCTCTCTATATATATATGGGTTAACCATATATTTTGGAAATAGTGT
AACAAACATTGTGCTCTCATCCTATTTATTCAATCATTTTCTGTTTTAAA
GTTACAACAGAATACAAGAAACATGCTTCCTTCAGTCGGTGTATTTGGCA
CAGACCACCAAGCTCAGATTTTAATTGCATTGTTCAAAGCTGCTGGATTC
CCTGTCACTGCTATTTGTGGTTCTACCTACGAGAGTGCGAAATCACTAGC
TAATGATTTGAAAGTTGCTTTCCACACCAATAAGATTCAAGAATTGTTGC
TTCATAATGAAGTGGATATTGTTTGTGTGGCTGGTACACCACATCAATAT
GCTGAAGTCTGCACTAAAGCTCTCTCCATCGGCAAACATGTTTTTAGTTC
CACTCCAGCAGGTTTAACACTAAAGGAAGCAAATGATATGCTTAACAAAG
CACAATATTATCCTAAATTATTATCTGTCTTGAACCATCCTTTGAGATTC
CTGAGTGCTTACTCAGAAGCAAAAAACTTGATCAAGGAAGGGAGAATCGG
TGAGATCTTGATATGTGAATGTCGTATACATATCAAAAGTTTGATTGGTA
GTTCCTTTGATTGGCATTGTGACAGTACCATGGGTGGAGGGGTGTTACAA
ACATACGGAAGTCACATTGTTGATATCTTATCATTCCTTCTGGAACAAAA
AGCTACACAGGCACATGGTATCCTCGAAACATTTGTCAAACAAACCGATA
AAATGCCCAATTTCCGACAAATATCAAGTGATGATTTTTGTTCCTTTCAA
TTGAAATATCCAAGTGGGATAAGAGCTTGTGTTACATTGAACGCTCACAT
GCCGAACAACTTCGTACAAGAGGTTATGTTGGTTGGTAGTAAGGGATTCT
TGAAAATTGTGAATTGTAATTTATATGGACAAATTAGTGGAAGTGATACC
GTTGAATGTTTGTATACAGAGGAGCAAGGTGACCGTTCACTTTATAGTTC
GTTTGAAGATATCCTTCCAGGGATGTATTTACTTGGTTGTGAACAGTTGA
TTGAAGGAATCAAACTAGCCTTCGAAAGCACTCAGTTGATGGGTATGGAC
CAAAGCACCGACAGACGAAACGCTGATATCAACTTGATTACAGCTGCAGC
TAACTTTGAAAATGGTAAGATATTATTCTGATTTATTTAAAGAGGATTGT
TAAACTTCCATGACTGCTATTCCATTAATTAAAAAATGTAGACTAATTAT
TAGAATTAAGAATTGGTCATCTATTGGTACGAGACAGTCTTTTAGTTTTG
TTGCTTTGATGTTTCTTTATGTATACTTACATCTTAAACCTCCCCCCATA
AAAGAGACTATTACAAACTTCCTTATTTAAAGATCATCATCGTATTCTGT
ACTGCAAAATGTTTAACCAAACGTTTACCTAAACGTGGACTGCATCTTGC
ACATTCGAGTATTTTTCCTTTTTTAGGTTGTTATACACGGTCTGTATTGG
ATGCCATCTTCGAATCGAACAAACAACGCCAATGGGTGGAAATCAAACAA
CCAGGTGAAGAGTTCAGAGATAACACTTTTTGGAGTTCCAAAGAATGTTC
ATTACAACAAAGTGGGATGAATAACACCGACAACAGGGTTCTGAAGCCCA
GAACGGATACTCAAAAACAACGCTCTTCTCCTCACGTCTCCAAAAAGAGA
TGAAAGAGATGCATGTAGTCATAATTCGGGGTTCTTCTGAATGTGATGGT
AGAATGTTGCCCATTAGCCAGCCACAAGACCTTGTTCTGTTGCTAGGGAA
CAATCTTTTTAACCGATTTTATCTCCTGATGTCTATGAACCAAGAAAGTG
AATAATTGTTAGTTAATTTGGAGAACAAAAAAAAGACAAAGGCTAACTTC
ACTTTGAAGTAAATTGGAAGGGCGGATGGCATTGACTCTTGAGAAAACGT
GTATCGTCTTTTTTTCTTCTTTTTGTATATATTGAATTCTGCATAAAATT
GAAAATGCCGTTAAGAATTGCTTGTTTTTATTTGCC

Coding sequence (CDS) from alignment at sc0000474:15067..23902-

>TCONS_00024078 ID=TCONS_00024078|Name=TCONS_00024078|organism=Clytia hemisphaerica|type=CDS|length=2538bp|location=Sequence derived from alignment at sc0000474:15067..23902- (Clytia hemisphaerica)
GTTGTTATACACGGTCTGTATTGGATGCCATCTTCGAATCGAACAAACAA
CGCCAATGGGTGGAAATCAAACAACCAGGTGAAGAGTTCAGAGATAACAC
TTTTTGGAGTTCCAAAGAATGTTCATTACAACAAAGTGGGATGAATAACA
CCGACAACAGGGTTCTGAAGCCCAGAACGGATACTCAAAAACAACGCTCT
TCTCCTCACGTCTCCAAAAAGAGATGAATGCTTCCTTCAGTCGGTGTATT
TGGCACAGACCACCAAGCTCAGATTTTAATTGCATTGTTCAAAGCTGCTG
GATTCCCTGTCACTGCTATTTGTGGTTCTACCTACGAGAGTGCGAAATCA
CTAGCTAATGATTTGAAAGTTGCTTTCCACACCAATAAGATTCAAGAATT
GTTGCTTCATAATGAAGTGGATATTGTTTGTGTGGCTGGTACACCACATC
AATATGCTGAAGTCTGCACTAAAGCTCTCTCCATCGGCAAACATGTTTTT
AGTTCCACTCCAGCAGGTTTAACACTAAAGGAAGCAAATGATATGCTTAA
CAAAGCACAATATTATCCTAAATTATTATCTGTCTTGAACCATCCTTTGA
GATTCCTGAGTGCTTACTCAGAAGCAAAAAACTTGATCAAGGAAGGGAGA
ATCGGTGAGATCTTGATATGTGAATGTCGTATACATATCAAAAGTTTGAT
TGGTAGTTCCTTTGATTGGCATTGTGACAGTACCATGGGTGGAGGGGTGT
TACAAACATACGGAAGTCACATTGTTGATATCTTATCATTCCTTCTGGAA
CAAAAAGCTACACAGGCACATGGTATCCTCGAAACATTTGTCAAACAAAC
CGATAAAATGCCCAATTTCCGACAAATATCAAGTGATGATTTTTGTTCCT
TTCAATTGAAATATCCAAGTGGGATAAGAGCTTGTGTTACATTGAACGCT
CACATGCCGAACAACTTCGTACAAGAGGTTATGTTGGTTGGTAGTAAGGG
ATTCTTGAAAATTGTGAATTGTAATTTATATGGACAAATTAGTGGAAGTG
ATACCGTTGAATGTTTGTATACAGAGGAGCAAGGTGACCGTTCACTTTAT
AGTTCGTTTGAAGATATCCTTCCAGGGATGTATTTACTTGGTTGTGAACA
GTTGATTGAAGGAATCAAACTAGCCTTCGAAAGCACTCAGTTGATGGGTA
TGGACCAAAGCACCGACAGACGAAACGCTGATATCAACTTGATTACAGCT
GCAGCTAACTTTGAAAATGGTTGTTATACACGGTCTGTATTGGATGCCAT
CTTCGAATCGAACAAACAACGCCAATGGGTGGAAATCAAACAACCAGGTG
AAGAGTTCAGAGATAACACTTTTTGGAGTTCCAAAGAATGTTCATTACAA
CAAAGTGGGATGAATAACACCGACAACAGGGTTCTGAAGCCCAGAACGGA
TACTCAAAAACAACGCTCTTCTCCTCACGTCTCCAAAAAGAGATGAATGC
TTCCTTCAGTCGGTGTATTTGGCACAGACCACCAAGCTCAGATTTTAATT
GCATTGTTCAAAGCTGCTGGATTCCCTGTCACTGCTATTTGTGGTTCTAC
CTACGAGAGTGCGAAATCACTAGCTAATGATTTGAAAGTTGCTTTCCACA
CCAATAAGATTCAAGAATTGTTGCTTCATAATGAAGTGGATATTGTTTGT
GTGGCTGGTACACCACATCAATATGCTGAAGTCTGCACTAAAGCTCTCTC
CATCGGCAAACATGTTTTTAGTTCCACTCCAGCAGGTTTAACACTAAAGG
AAGCAAATGATATGCTTAACAAAGCACAATATTATCCTAAATTATTATCT
GTCTTGAACCATCCTTTGAGATTCCTGAGTGCTTACTCAGAAGCAAAAAA
CTTGATCAAGGAAGGGAGAATCGGTGAGATCTTGATATGTGAATGTCGTA
TACATATCAAAAGTTTGATTGGTAGTTCCTTTGATTGGCATTGTGACAGT
ACCATGGGTGGAGGGGTGTTACAAACATACGGAAGTCACATTGTTGATAT
CTTATCATTCCTTCTGGAACAAAAAGCTACACAGGCACATGGTATCCTCG
AAACATTTGTCAAACAAACCGATAAAATGCCCAATTTCCGACAAATATCA
AGTGATGATTTTTGTTCCTTTCAATTGAAATATCCAAGTGGGATAAGAGC
TTGTGTTACATTGAACGCTCACATGCCGAACAACTTCGTACAAGAGGTTA
TGTTGGTTGGTAGTAAGGGATTCTTGAAAATTGTGAATTGTAATTTATAT
GGACAAATTAGTGGAAGTGATACCGTTGAATGTTTGTATACAGAGGAGCA
AGGTGACCGTTCACTTTATAGTTCGTTTGAAGATATCCTTCCAGGGATGT
ATTTACTTGGTTGTGAACAGTTGATTGAAGGAATCAAACTAGCCTTCGAA
AGCACTCAGTTGATGGGTATGGACCAAAGCACCGACAGACGAAACGCTGA
TATCAACTTGATTACAGCTGCAGCTAACTTTGAAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013525XLOC_013525Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024078-proteinTCONS_00024078-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024078-exon-sc0000474-1575043694:22613..23902TCONS_00024078-exon-sc0000474-1575043694:22613..23902Clytia hemisphaericaexon
TCONS_00024078-exon-sc0000474-1575043694:15939..17001TCONS_00024078-exon-sc0000474-1575043694:15939..17001Clytia hemisphaericaexon
TCONS_00024078-exon-sc0000474-1575043694:15067..15626TCONS_00024078-exon-sc0000474-1575043694:15067..15626Clytia hemisphaericaexon
TCONS_00024078-exon-sc0000474-1510915933:22613..23902TCONS_00024078-exon-sc0000474-1510915933:22613..23902Clytia hemisphaericaexon
TCONS_00024078-exon-sc0000474-1510915933:15939..17001TCONS_00024078-exon-sc0000474-1510915933:15939..17001Clytia hemisphaericaexon
TCONS_00024078-exon-sc0000474-1510915933:15067..15626TCONS_00024078-exon-sc0000474-1510915933:15067..15626Clytia hemisphaericaexon
TCONS_00024078-exon-sc0000474-1491911889:22613..23902TCONS_00024078-exon-sc0000474-1491911889:22613..23902Clytia hemisphaericaexon
TCONS_00024078-exon-sc0000474-1491911889:15939..17001TCONS_00024078-exon-sc0000474-1491911889:15939..17001Clytia hemisphaericaexon
TCONS_00024078-exon-sc0000474-1491911889:15067..15626TCONS_00024078-exon-sc0000474-1491911889:15067..15626Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000474supercontigsc0000474:15067..23902 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
50.4608	52.5953	31.4971	25.9534	11.4144	8.86134	13.9287	14.7016	13.7864	15.1489	12.2305	9.49741	13.0221	13.0504	10.0357	12.2223	16.8765	17.0587	9.91272	10.3726	15.536	15.1223	22.8201	22.6998	14.5595	14.0138	12.3699	11.0876	13.764	16.9732
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000683Oxidoreductase_N
IPR004104OxRdtase_C
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
Blast
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BLAST of TCONS_00024078 vs. Swiss-Prot (Human)
Match: GFOD1 (Glucose-fructose oxidoreductase domain-containing protein 1 OS=Homo sapiens GN=GFOD1 PE=1 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 3.014e-89
Identity = 160/379 (42.22%), Postives = 229/379 (60.42%), Query Frame = 1 
Query: 1312 MLPSVGVFGTDHQAQILIALFKAAGFPVTAICGSTYESAKSLANDLKVAFHTNKIQELLLHNEVDIVCVAGTPHQYAEVCTKALSIGKHVFSSTPAGLTLKEANDMLNKAQYYPKLLSVLNHPLRFLSAYSEAKNLIKEGRIGEILICECRIHIKSLIGSSFDWHCDSTMGGGVLQTYGSHIVDILSFLLEQKATQAHGILETFVKQTDKMPNFRQISSDDFCSFQLKYPSGIRACVTLNAHMPNNFVQEVMLVGSKGFLKIVNCNLYGQISGSDTVECLYTEEQG-DRSLYS--SFEDILPGMYLLGCEQLIEGIKLAFESTQLMGMDQSTDRRNADINLITAAANFENGCYTRSVLDAIFESNKQRQWVEIKQPGEE 2439
            MLP VGVFGT   A+++I L K  GF V A+ G T E A+ LA ++ V F+T++I E+LLH +VD+VC+   P    ++  K L IGK+V     A  T  +A  M + A YYPKL+S++ + LRFL A+   K LI+EG +GE L+CE ++H  SL+G  ++W CD  MGGG L + G++I+D+L+FL  QKA + HG+L+TFVKQTD +   RQI+SDDFC+FQ+    G+   VTLN ++P  F Q+V +VGS G L  V  +LYGQ + +   E L  +      SL    +F DI P  YL G  ++++ ++ AF+       DQ  DRR  D   +T AA F++  Y   V+D I  S++  +W  I    EE
Sbjct:    1 MLPGVGVFGTSLTARVIIPLLKDEGFAVKALWGRTQEEAEELAKEMSVPFYTSRIDEVLLHQDVDLVCINLPPPLTRQIAVKTLGIGKNVICDRTA--TPLDAFRMTSAAHYYPKLMSIMGNVLRFLPAFVRMKQLIEEGYVGEPLVCEVQVHGGSLLGKKYNWSCDDLMGGGGLHSVGTYIIDLLTFLTGQKAVKVHGLLKTFVKQTDHIKGIRQITSDDFCTFQMVLEGGVCCTVTLNFNVPGEFKQDVTVVGSAGRLLAVGTDLYGQRNSAPEQELLVQDATPVSNSLLPEKAFSDI-PSPYLRGTIKMMQAVRQAFQ-------DQD-DRRTWDGRPLTMAATFDDCLYALCVVDTIKRSSQTGEWQNIAIMTEE 368
The following BLAST results are available for this feature:
BLAST of TCONS_00024078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GFOD13.014e-8942.22Glucose-fructose oxidoreductase domain-containing ... [more]
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