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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024068 ID=TCONS_00024068|Name=TCONS_00024068|organism=Clytia hemisphaerica|type=transcript|length=2696bp
ATAGATTACCGCTTGCTGCAAGGACGATTTGTGTAACTCACCTGCTGTCA
CAATCAAATTCAATGCCAGCCTTTTGGCTCTTGTTGTCATGGCTACATTT
TATGTTCTTTTTGGACGATAATTCATATATTTCACTATTGTCATATTTAA
ACACGATTTATGTCGCTAAAACCAATGAAGTAtgagcctgaagggctaga
atcgaatctttaaaatttctcatgcaaaaaataaaagtgaagCTTTAAAA
TATGCACTGTATTTTTggtgacggattgaatctacccagacggcacacaa
cgtcaaaacaacgtccatgtgacattcacaacgtccaaatagcgttattt
gaacgttaaaacaacgttgtgtgccagctgggtagcgATTCTTTTCTTTT
CGAGTCAtgtctttttcgaaatttggttgtaaattttagtttcaatctgt
catttgtgtaaaaaccaggtggACGCGCTAAGCCACGCAATTTTGATAGG
ATTtggttggcttcaaatcctaccaagaagATTCCATTATAGCCTTTCGG
GCTTCTACTTCATGGGCTAAAACCTTTGAGGTATAATGCCTTTTCGCACT
TGTATGTCAAATTTCACTGTTGTCCTTACAGAAGATCGCCTATGCTGTTT
TTGGGAATCTCCCCGAAATTGGGACAttcaattttatatttataCATGGT
GACGAAGATGGGGGTAATCGGTGAGAATTTTTTCACTGGTATAAAGAAGT
ATTTTCTCAccttccagggggtaaaagtttattctaaaatttctaagggg
taaaagaccaattttagttCGTTCGTCCTTACTTATAAGGTATGAtaata
atttttccaagggctcttttgcaactttttccatttttcacgGGGAATAT
AAATAATAAGTTATTTCTAATATTtgtaatctatatattaatacgctaaa
acgtgtgtgtttacagcGTTTTGTAAGCAgtgttcgaaaatctaacaaag
ctctacaaagtcTCCtattcatggcgttgaaccatcatctttttgcacct
taagcagatttcctaccactagactaactttgagaccccaagatactatt
GTCTATACAGGACGTGTGGAGctggatgggttaaaatcaactttcttccc
aaattttatttttcattttaaagagtTATTATTCAGACGCTCTTTAAAAC
GTTCTGTTTGCGGCTCCCTatcaatttcaaagttttcaaagtctttcaaa
gtctttcatagtctttcaaaatctttctcGAATGTCCAACCACGATGGCT
AGCTACGATGGCTAAGAAgatctaaaatataatttttctaagccatttac
ttaattgtggctaaaaattgcaatgcaatgttatcttttttctcctttcc
tAAAATCTAAATCGTATCATCAATCGGCCTCTATCTTTCTTCCGttagaa
ttttttagatgtgtGGTGATTCACTGTATTGGGACACGtagcgtgcgacg
ctgcgcatacggctagttttaattaataatatttgattttaatttataat
ttcatttttattttatctataatttataatttttcctAATTTACATATTG
TAATTTTATGTGAATATTATCAATGGTCGTTGTAAACTTCAATATAAAAT
TCTTACATGTGCATAATAAGTTGTGTATTTTCATAAAATcgaaaaactat
ttgaaaaagtCTTAACTATGTAAGTTAGTGACTGGGAGACAAGAAATAGA
CACAAAGTTGAGTCGTTTGACCCTGATGAAATATATTCTGTAGTATTTTA
TAAGTTTTATGTACAAGTGTGGCGGATACATTGGGGTCACTCCTAGAGGA
ACTAAGTGGATGGCGTAGTATACCCTTAATTCAGAGGGCTTATACCATAG
GCGGCATAGCCTTAAAACAGAGGGCGTATACTAGAGGCTCTGTACAAAAG
GCAAGACGGGTGGCGTGAACATCAGAGGCCCTAGAGAATCTAGACGTCAC
AATCAAGTGACCAACCTCCAAAGAGAAACGGCCAAAGAGTGACCCCAAAT
GCCACAGATCAAGGGAGCGGGAGGAAATATACTAGACGAACTAGTGTAAG
GGGGTAAGAGAGACTGTTAAGTCGACTCGGATCTAGATAGACAAATCATA
ACCGTAATGAATATTATTGTTGTATGTCAAAATACCTACTGATATAAATA
TGACAGTCTAAATCATGATTAAAAATGGAATAAGATTGTTAAAAATACgc
aaaaataacaacaaaattTGTCAAGTAAGGAACGTGAGGTTCTATTTAAA
TTTAACCATATTAGCCCCAGGCGAGGATGGGGgatagaatctaccacgct
atAGTTCTTTTGTGTATTTATATCTCagagaaaaatttcttaaacgactt
gaaacatTCTGACTCAAtgaaatcttattaagagtacttgtgcaaaatct
TGGATTTTCTTGGCAAGATCTTATGGTAAGAACTTGTAAGATCTGACATA
TCACAAGATCTTGCAGGATCTTGCATGATCTTATCAGATCTTGCAAGGTC
TTGGCAAGACCTCGCAGAAAGTCGCTGGCTGTTTCATTTGAATGTATTGC
CTGTATCCTTGTTCTTGACTGGCAATCATTAGGTCGATTTTTGTCTGGTC
TGGGACTGCGAGGTTTTGGTTTCTCGACGTTCGCGAGATAAACTGC Run BLAST on NCBI transcript from alignment at sc0000471:255342..258037 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024068 ID=TCONS_00024068|Name=TCONS_00024068|organism=Clytia hemisphaerica|type=transcript|length=2696bp|location=Sequence derived from alignment at sc0000471:255342..258037 (Clytia hemisphaerica)
GCAGTTTATCTCGCGAACGTCGAGAAACCAAAACCTCGCAGTCCCAGACC
AGACAAAAATCGACCTAATGATTGCCAGTCAAGAACAAGGATACAGGCAA
TACATTCAAATGAAACAGCCAGCGACTTTCTGCGAGGTCTTGCCAAGACC
TTGCAAGATCTGATAAGATCATGCAAGATCCTGCAAGATCTTGTGATATG
TCAGATCTTACAAGTTCTTACCATAAGATCTTGCCAAGAAAATCCAagat
tttgcacaagtactcttaataagatttcaTTGAGTCAGAatgtttcaagt
cgtttaagaaatttttctctGAGATATAAATACACAAAAGAACTatagcg
tggtagattctatcCCCCATCCTCGCCTGGGGCTAATATGGTTAAATTTA
AATAGAACCTCACGTTCCTTACTTGACAaattttgttgttatttttgcGT
ATTTTTAACAATCTTATTCCATTTTTAATCATGATTTAGACTGTCATATT
TATATCAGTAGGTATTTTGACATACAACAATAATATTCATTACGGTTATG
ATTTGTCTATCTAGATCCGAGTCGACTTAACAGTCTCTCTTACCCCCTTA
CACTAGTTCGTCTAGTATATTTCCTCCCGCTCCCTTGATCTGTGGCATTT
GGGGTCACTCTTTGGCCGTTTCTCTTTGGAGGTTGGTCACTTGATTGTGA
CGTCTAGATTCTCTAGGGCCTCTGATGTTCACGCCACCCGTCTTGCCTTT
TGTACAGAGCCTCTAGTATACGCCCTCTGTTTTAAGGCTATGCCGCCTAT
GGTATAAGCCCTCTGAATTAAGGGTATACTACGCCATCCACTTAGTTCCT
CTAGGAGTGACCCCAATGTATCCGCCACACTTGTACATAAAACTTATAAA
ATACTACAGAATATATTTCATCAGGGTCAAACGACTCAACTTTGTGTCTA
TTTCTTGTCTCCCAGTCACTAACTTACATAGTTAAGactttttcaaatag
tttttcgATTTTATGAAAATACACAACTTATTATGCACATGTAAGAATTT
TATATTGAAGTTTACAACGACCATTGATAATATTCACATAAAATTACAAT
ATGTAAATTaggaaaaattataaattatagataaaataaaaatgaaatta
taaattaaaatcaaatattattaattaaaactagccgtatgcgcagcgtc
gcacgctaCGTGTCCCAATACAGTGAATCACCacacatctaaaaaattct
aaCGGAAGAAAGATAGAGGCCGATTGATGATACGATTTAGATTTTaggaa
aggagaaaaaagataacattgcattgcaatttttagccacaattaagtaa
atggcttagaaaaattatattttagatcTTCTTAGCCATCGTAGCTAGCC
ATCGTGGTTGGACATTCgagaaagattttgaaagactatgaaagactttg
aaagactttgaaaactttgaaattgatAGGGAGCCGCAAACAGAACGTTT
TAAAGAGCGTCTGAATAATAactctttaaaatgaaaaataaaatttggga
agaaagttgattttaacccatccagCTCCACACGTCCTGTATAGACaata
gtatcttggggtctcaaagttagtctagtggtaggaaatctgcttaaggt
gcaaaaagatgatggttcaacgccatgaataGGAgactttgtagagcttt
gttagattttcgaacacTGCTTACAAAACgctgtaaacacacacgtttta
gcgtattaatatatagattacaAATATTAGAAATAACTTATTATTTATAT
TCCCcgtgaaaaatggaaaaagttgcaaaagagcccttggaaaaattatt
aTCATACCTTATAAGTAAGGACGAACGaactaaaattggtcttttacccc
ttagaaattttagaataaacttttaccccctggaaggTGAGAAAATACTT
CTTTATACCAGTGAAAAAATTCTCACCGATTACCCCCATCTTCGTCACCA
TGtataaatataaaattgaaTGTCCCAATTTCGGGGAGATTCCCAAAAAC
AGCATAGGCGATCTTCTGTAAGGACAACAGTGAAATTTGACATACAAGTG
CGAAAAGGCATTATACCTCAAAGGTTTTAGCCCATGAAGTAGAAGCCCGA
AAGGCTATAATGGAATcttcttggtaggatttgaagccaaccaAATCCTA
TCAAAATTGCGTGGCTTAGCGCGTccacctggtttttacacaaatgacag
attgaaactaaaatttacaaccaaatttcgaaaaagacaTGACTCGAAAA
GAAAAGAATcgctacccagctggcacacaacgttgttttaacgttcaaat
aacgctatttggacgttgtgaatgtcacatggacgttgttttgacgttgt
gtgccgtctgggtagattcaatccgtcaccAAAAATACAGTGCATATTTT
AAAGcttcacttttattttttgcatgagaaattttaaagattcgattcta
gcccttcaggctcaTACTTCATTGGTTTTAGCGACATAAATCGTGTTTAA
ATATGACAATAGTGAAATATATGAATTATCGTCCAAAAAGAACATAAAAT
GTAGCCATGACAACAAGAGCCAAAAGGCTGGCATTGAATTTGATTGTGAC
AGCAGGTGAGTTACACAAATCGTCCTTGCAGCAAGCGGTAATCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024068-exon-sc0000471-1491911889:255342..258037 | TCONS_00024068-exon-sc0000471-1491911889:255342..258037 | Clytia hemisphaerica | exon |
| TCONS_00024068-exon-sc0000471-1510915933:255342..258037 | TCONS_00024068-exon-sc0000471-1510915933:255342..258037 | Clytia hemisphaerica | exon |
| TCONS_00024068-exon-sc0000471-1575043694:255342..258037 | TCONS_00024068-exon-sc0000471-1575043694:255342..258037 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000471 | supercontig | sc0000471:255342..258037 . |
Blast
The following BLAST results are available for this feature:
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