|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024059 ID=TCONS_00024059|Name=TCONS_00024059|organism=Clytia hemisphaerica|type=transcript|length=1582bp AGTTTCGAGATTTTCAAACATTCTTTTACCATGTCATAGAAAGTTTCTTA GTTGACATCAGATTGCAAGAGGGTAGCAACAACGAAGAGACCCAACTTAA AATGAAGTCCTtgattgtatttttatttttggttatCTCACTCGCAAAAG TGCGGCAGTTTGGCAACCAAATGCTACAATGATCTTTTATTCCGGGGTAA AGATTTCATTGTCTGTGAAAATTTGTACGATGTGAATATCTGGAGGATGG CAATATACCACGAGAACAATGTGTCCAAAGGtgtGCAGATATAGCGATAG ATTGTGAAAAACAATACCCCTCTTGGATGTGGTGGCTCAAATTTAAGCGA ACTGCTTGTGGTACCAATGGTTATAAATGCTTGAATGGATGTAAACAGAA ACATGACAGCGCTGGACGAAAAAGAACGATGCTTAAAGATTTCGGTCAAT TTGAAGAACAAAAAAGAGGTCTTTATGAAGATGCGAGAAGAGACAGAAGA ATGGAAAACAAACGGCCACAACATGACGACTTCAATGAATTTTATGATTT CGCATTTGACAAATATTAAATTATTGTCGAAAATTTGTTGTACATTGTTT CCTTTTGTTATCGAGCACTATTTTCTTCATCGTTCTccatgatttgattt gatttttttgtgcacGAAAGTTTTTATTTATATCGGGTACTATATTGAAG ACGGTGAGTTTTGCACAATCTAAGATCAGATTGGGTTCAAAAATCTGGTA ATGTCCCGCACCATGTCAATTATTTGTTCTATCTCGAACCCAAATTAAGA ATTCATTGTCTCTTGTCACATTGTCACACCACACACCTATGTATCAAACC CcaacttttaaaaattatttcactgACATCAATTTCCATTTTCCTCGCGG AAAACTTGTATGCTTAAAAAACGTTCCATTCTCCCGCCAAAACTGATTCT AAACGTTTCCAAAATGGTGGCTGTGAACAAGAGCATCTTATTGAAGAAGA GGCCGGTAGTAAGCATGTtattaaagaagatttttcaatttgagACATTT TGAGAGCGGAAAAGGAAAAAAGTTGGATTGGCCACTTTATAATCATTTAA TTGACTATCATTTTAATGGTGTTTACTTTATCTTATGTAAaatcttttgt aatttttttcttgagaCCTTTTCCAGGATAATacatacttttttttataa gaatgatgtaaatccatttcatcatggatattcttaacttaacCTAAAAT ATTATTTATAGCATCCTTAGGTTAAGAtctaaatcttaattttttggcca ttttcatcatggacattcttataaggtgtattcttatataaaaaacgttg AATGTCCGTTTAAGGTCTCTTTTAGCTATTAACCACTTCAGTTGTAAAGA AGCTCGCATGCACTGCGGCGGTAAGTTTTAAGTGGaaaaatttctcagaa aaaggccaaaagttttcatttttgattcttAATCtcaatagatttaaaaa aattcatgagtATTGAAAAAAGGGATAAACCTCCTTTATCTCGTCATATA TCCGCAGCATATTAAATTATTGAGCAGTCGAG Run BLAST on NCBI transcript from alignment at sc0000471:170962..179196- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024059 ID=TCONS_00024059|Name=TCONS_00024059|organism=Clytia hemisphaerica|type=transcript|length=8235bp|location=Sequence derived from alignment at sc0000471:170962..179196- (Clytia hemisphaerica) AGTTTCGAGATTTTCAAACATTCTTTTACCATGTCATAGGTTAGTCAATA
CTTAACTCTACAGGTTATTTTGGTAAATCCACTGATACAATATCGGAGTG
CAATAATTATTATATTCGCCTTGGATAATAGGGCAACAACTCACTCAGTT
ATTTTGAAATAAGCCAGTTTATAAATGTAATGACATAAATATTTCGAGAT
TATGCAATCTTTTAAGATGGGGTCGGGGTACTTGGGCAAAAATGAGCACT
GCGATGTGCCGCTGGTCAAGGTACCTTATCTCCATGAGTCCCAGGTAGGA
TCACGAAGCGCGCAAAAAAAGATAAATCAGTCCCTCGAAGGATAGTCGGG
GGAATTCGGGAGAAGTGTGGTAGATTTTGCAATATCCATTGAGAAAATAA
AACAATATATACCCTACTTCAATTAAGGAATTAAAGTATTTAGTGGGAAA
ATCATCTCTCTTAGAGAAATTCCTAACATTTCCGACATATAATCAAATTT
AACAAAGTTTTGCTGCATAGGCGGAATCGGAATATGTAAAAGAACCGCAA
ACAATATATTTTAAACGGATTAAATTTCGCGAGATTAAATTTCGCGAGAT
TAAATTTCGCGAGATTAAATTTCGCGAGCTAGAAAAATCGCGAGCTAGAA
AAATCGCGAAATTTTCTGGATTTAATTTCGCGACTCAGAGTTTTGAAATA
TTTCGTGTGGATTTAATTTCGCGAATAAGCCCGAAAACAGCTGAAAATAG
CCATTTTTTGCCATAAATGGAGACTTGGAACTAGTTTCTCCGCCAAAAAA
TACAATTTTAAAAGTTTTGTGGTGGATTTAATTTCGCGAATAAGCCCGAA
AACAGCTGAAAATAGCCATTTTTTGCCATAAATGGAGACTTGGAAGTAGT
TTCTCCGCCAAAAAATACAATTTTAAAAGTTTTGTGGTGGATTTAATTTC
GCGAATCAGGAATCTCACGCGTGTTCGCGAGTTTTAATTTCGCGAAAATG
GTAAAAATTCGCGAAATCGCGAAATTTAATCTCGCGAAAATTAATCTGAT
TGAAGTACTAGGCACTCCTGGGTGAGTATGACATAAACGTACCCCTTATT
ATACCCCTGTGTCACAGACCCGCTGGGAGCCTCACTGGAAAGATTGACCA
TTGACAAAAATTTCGTCGCCGGTGGGAAAATACCTTAGAATTTCAGCTCC
ACTTGAAAATTAACTTTTATTTCATCCCCATTCGAAATTGCACTTCAAAA
CCATTGCCACTAAATATTTTAACCTTCGAACGAAGGAATTTCTATCCCCA
TTGGGATTTCAATAGAAAATTTTATCCCAACTAAGAAAAAAAGCTCCACC
GGGGGTGAAACAGGGGTGTCTTATTCTGGAACGACTAATTTTTGCTGTAG
ATTAACAATAGGATAAGAAACAAAGGACGATTTTAGGCTCAAGACGCCAA
GATTGAGAACAGGCGAGTCCCAACAACCTCCCAGCCTGGCACACAACGTT
GTTTTAACGTTTATCTAACGTTCACAACGTCCATTTAACAGTAGATTAAC
GTTGAAACAACGTTGTGTGCCAGCTGGGTTACTGCTGCTTCTACACAGTC
AATTAAACTCTGACAAAAAATACCAGGTAAATGGACTTTCATGGATTAGG
AAAATAATCAAAAGTGTTTTTAAGGAAATCTATAATCGGATCCGTCCGAG
ATCAGATTAACTACAACCCTAGTTTCACTCTTCGAATAAAAGGCATCAAA
GCAAAGCAATAATTGACTGTGTTTTCGGAAAAGTTGAGTATTCTTTATCT
TATTAGTACAAAGCTGGACGACAGTGTTTTTAATAAATGCCCCAATATCT
ATGACAGCTCCTATCTAAAATATTTTGTTATTGTTCTTTTCTTTTTCCTT
CAAAGCCGTCTTTTATAGTTCTGATTTAATTTAAAAAATCAGTTTTTAAA
TATATTTGTCCTCTTGACTCATAGAAAGTTTCTTAGTTGACATCAGATTG
CAAGAGGGTAGCAACAACGAAGAGACCCAACTTAAAATGAAGTCCTTGAT
TGTATTTTTATTTTTGGTTATCTCACTCGCAAAAGGTAAGGGTGTATTTT
TTTTAGGATGGACCATTTATGTATTTTCTATTCCTAAATAAAAAATCATC
CAGTTGAGAGCATTTGGGATAATTTATTCCTGATCCTCTTTGAGTCTTTT
TGAACTGAGGATTGTAGTATGTTAATTTGATGTTATAAAATTTTAATTTT
TCACGGAATGTACTTTTGATGGCTAAGCGACAACAAAAACTGTCAAAATT
GGTTCAATCACACAAAAATAGCAAAAATCTTTGAAATCAAGATATGGCCA
AAATCTTGATCACGCTATCACACCCCTGTGTCAGTGATCCGGTCAGTTCC
ACCCGGTGGATAACCCGTTGAAGAGAATTGCCGAAAATTGCCCAATTTTA
AGCCATAGTTGGATATTGACTGAACCCGTAGTTTAGCGAGCTAAACGACT
AATTCAGATATAGTAGAAATAAAGCAAAAAGTAATGGAGGGAACAAATTT
TAGTTTATACAAACTAAATCCCGTCACAATAATCGAATTATCATATAACG
CCTATTCTAATGTATTACACGCAATATAAACGAATCCACTGAACCCGGTA
AAAATTAATCAAACTTTTCCACCCCTGGGCAGAATCTGGAAGTTTATGGT
CATACCCGCCAGTCATTGTTAACATTAGGTAGGTCAACCCGGTAAAAGTT
ATTGGAATTTGTAGTCATATGCGCTTGTCATTAATTACATTATGTAGGCC
AACCCGGTCAAAAATTCCAGATTTAGCGGCGAGCAGCCTAGTAAAGTAAA
AGTTTGCCTTAATTTTTTATTCGCCTTCTCATCGACAAATGTCACTGTCT
TTTCCCTAGTGAAAAATTATCTTTCTTAAAATCAGACCCGTGAAGTTTTT
TAATTTTCATAGTCCCCTCGGTGGTTTTAAAATGCCACCCGGGGTTATCA
AATATGGTCATCCCGCAAACTGAAAATTTTGTTTAAAGTAACCAGCCCTA
AAGATATATATATTTTGTCATTTTTCTTTCAGGTAATGTATTAAAAGGAC
CAGTAAGTACAATACATTGTTTTCTTCAAATAATTCTTGTTATCATTTAC
TTCACCAATAGAATCTATCGTTTTTTTATCATGTGATTTTTGCACTTGCA
ACATTACTCTTCTGTGCTTAAAATTACTTTATAATTACCCCCCCTATTTT
ATGACTTTTTGCCTAAAAGTGTCAAAAACCTTCATTTTCTCAGGGAAATT
CACCAAAACCACTCCAATATCACGTAATTATGACCCCCCATTTTATGATT
TTTCTTCCAAAATTTCATCTCCCCTGCTTATTCTCCCCCATACAATTAAG
CACAGAAGAGTACCGTACTCAACCTCAAAAAGAATTCAGTCGCAGTCGCA
CTAAATTTAGGCAATATTTGAAGATATTATATAGCTATAGTGCCCTATAG
TGAGCTGGTCGTCACCCAGCTGACACACAACGTTGTTTCAACGTTCATCT
AATATTATATGGACTTTGTGAATATTAGAAAACGTTGAAACGAAGTTGTG
TGCCAGCTGGGCAATCATTTTCTCTGATAGCACGAGGACAGCCAAGTTAT
ACTGCCTATTTTGATTGATAAATTCAGTGCGGGGATCTCGATTCAGATTT
GTCTTTTCAGTGGTGAAAAAAAGGAGTTCTTTTGACAAAAGTTTTCATAG
CCTCAGTTTTCTGACAATTTTATAATCCTAGTGCTGTAAAGCATACGCAC
TTTTTCTTTTATAAGAATATACTTTATACAAAATTAATAATACTTTATAA
AAATATATATAAGAATATTTATGATGAAATTGACCCAAAAATTTAAAAAA
TGCCAGAAAATCACCATCATGAAATTCGGCAAAAGAATGATCATTTTATA
GCTTTATTACCTGTAAATTGCCAGTTACCCCCTTCCAATAAGGTTCAACA
CTTTCACAAAAATGCTATTTCACGCTTCAGGGTATGTATCACGCATGTTA
AGTTCAGGTTGGATGCAACTTTTCGACCGTAGCTGCCAATTACCGCACGG
GCATTTTTTTGTTCATTTTACCACCCTAAAACCGTCCCAGTCTTTTTTTC
TCACCTAGACAATAGAAAAAGGTGTTAAAAAAGGATTGGATCGAGTTTAG
GGGGAAAAATGCCTGCGCGGCATGATTTTCCCAAAAAGTTAAGAATATCC
ATCATGAAATGGAAAAACACCATCCTAATAATTAAAAGCATGTACCTAAT
AGCCGTTCCCCCCCGCTAATTAATTTCCACCCAGGACATTCTTATTCCAA
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCGCTTGTTAGGTTTTG
AGATTTTTTCCAACCCCCCACTTATTCCAATCCCCCCGGCTATTAGGTAC
CCGAGAGTAGTGCATTTTTTACCCATAGTGCATTTCACCTATACAATGCA
TTTTTTACTCATAGTGCGGCAGTTTGGCAACCAAATGCTACAATGATCTT
TTATTCCGGGGTAAAGATTTCATTGTCTGTGAAAATTTGTACGATGTGAA
TATCTGGAGGATGGCAATATACCACGAGAACAATGTGTCCAAAGGGTAAT
TATCCGATCCCAGCTGACACACAACGTTATTTCAACGTTCATCAACGTTA
TGTGGACGTTGTGAACGTTAGATAAACGTTGAAACAACGTTGTGTGCCAG
CTGGGGTATTTTAGATTGGGGATTCAATAGATTGCTTAAAAAGAATGAAA
GTCGGCCTGAGATATGCTTCATCCCTTCAATACTCTTGTCTCCCGAATAG
ACGCCCCCCTGCTAATTGTTAAGAGAAACAAAGCCATCCCCCGCTCTTAT
TAAGACCCCCCTAATTAAATTCGACTAATTCAATATTTTATTACAGTGTA
GATAGACCTTAAACTTGTTAAAGTTTTCATTTTTGTTAGTATTGGTTCTT
ATTTTACGTGTTCATTTCTTTTTTGTTGTTGAAATTGATATCAGTTAAAA
AAAATGCTGTCTTCAAATTCCCCCCCCCCCGCTTATATTCCATCCCCACG
CTAATTAGAATTTAGAAAACTGCGTTCGCAGACTTACTTATCGCTACTTG
GGTTTAACTTATCGGTATCGGTAACTTTTTATTTTCAGTGTGCAGATATA
GCGATAGATTGTGAAAAACAATACCCCTCTTGGATGTGGTGGCTCAAATT
TAAGCGAACTGCTTGTGGTACCAATGGTTATAAATGCTTGAATGGATGTA
AACAGGTGGGTAGCATATTTTTAATTCATTCTTTATATTTTAGCTGTCGA
AGCCTCTTGTTCTTGTACACGTTTTTCATAAGAACTACATAAGAACAGGC
TTTGAGGACAAAATACCATTAAGAACAAGATGTTAAGAACATTTAAGGCT
TTGCAGACCCTAAAACACCTAATTTCTTGGAAAAATGAACAAAAAAACTC
ACAAAATGGTGAAAATAAGAACATGTTGAGAACATTTAATCCTGTTCGTA
CTAGGGGGGGGGGTGTTTCTGTTTGGTAGTGAAACTATTGTTAAAAGCTC
CTGAAATAATACAGCTTTTGGCATGAAATTTTCTGTAAATTCATAACTTT
TATTTAGCTTCAAAATAAAAACAAATTTGACACCTAAAAATTTTCACACC
TTGAGCATGATGACATTTCTGACAGTAAGGTGTTACAAAATTGACACATT
TCCTTACCAGTTTACCTTTTATGTCAAATATATCGTTTAACCCGTAATTT
CTTGAATATTTAGGATAAAATAGCCATTTTAGACGCAGGGAACATTTTCT
AAAGCCTTTGTTTGAATACAACAGCTAGTTATAAGAACAAAGGAAATTTT
CGGTTTTTGCTCACTTTGGGCATGATGAGTGACGTCATCAACAATATTTT
GTCAAAACTTACCTTATATAAGAAGAATCTTGTGTTTCAAATTTCATCCA
AAAGAACAAATAGATCATATAAGTAATGGTGTGGTGCAGGAACACCCCCT
AGTTTTGAACCGCCCCTTAAAGCCTAGTATGAATAAGTTTAAAACTCCAA
AAGCTAAGAACATCCGAAAGCTTCAAAATTTTGGATATTCTTATAAAAAA
TGTGTTTTTTTATCTGTCGAAGCCTCTTGTGTTCTTACATAGTTTCTTAT
TATAAAAAAATGGACCCTGCGTGGGAATCGCTTTTTCAAAAATTTTGCCG
ACATTTGCGATAAAAATGTCCTTGAATGGGACTAAAATTCCCAAATTTTC
TCAGATTTTCTACTTTTCCCAAAAATTTTCCAAAATAGACACCCTACGAG
GGACTGATTTTNTTCAAAAATTTGCGAAAAAAATGTCCTTGAATGGAACT
AAAATTCCCAAATTTTCTCAGATTTTCTACTTTTCCCCAAAATTTTCCAA
AATAGGCACCATACGAGGGCCTGATTTTTCTATTTTGGTGTTTTTGCGAC
CCTACCTGGAACTAGTAAAGGTTAAAAAGGTACCCTGACCAGCGGTGCAT
CCCCGTAACACATTTTACCCTATCCCCCCCCGGTGAAAAACACATTATTT
GGAAGTGAAGATTGAAATAAGCACTGGTGGGTGTTTTCGAATGATGATCG
TTTCCCTTTGAAATTACATCTTCAAAGCAATTCATTTTGTCAATTCTTTA
GAAACATGACAGCGCTGGACGAAAAAGAACGATGCTTAAAGATTTCGGTC
AATTTGAAGAACAAAAAAGAGGTCTTTATGAAGATGCGAGAAGAGACAGA
AGAATGGAAAACAAACGGCCACAACATGACGACTTCAATGAATTTTATGA
TTTCGCATTTGACAAATATTAAATTATTGTCGAAAATTTGTTGTACATTG
TTTCCTTTTGTTATCGAGCACTATTTTCTTCATCGTTCTCCATGATTTGA
TTTGATTTTTTTGTGCACGAAAGTTTTTATTTATATCGGGTACTATATTG
AAGACGGTGAGTTTTGCACAATCTAAGATCAGATTGGGTTCAAAAATCTG
GTAATGTCCCGCACCATGTCAATTATTTGTTCTATCTCGAACCCAAATTA
AGAATTCATTGTCTCTTGTCACATTGTCACACCACACACCTATGTATCAA
ACCCCAACTTTTAAAAATTATTTCACTGACATCAATTTCCATTTTCCTCG
CGGAAAACTTGTATGCTTAAAAAACGTTCCATTCTCCCGCCAAAACTGAT
TCTAAACGTTTCCAAAATGGTGGCTGTGAACAAGAGCATCTTATTGAAGA
AGAGGCCGGTAGTAAGCATGTTATTAAAGAAGATTTTTCAATTTGAGACA
TTTTGAGAGCGGAAAAGGAAAAAAGTTGGATTGGCCACTTTATAATCATT
TAATTGACTATCATTTTAATGGTGTTTACTTTATCTTATGTAAAATCTTT
TGTAATTTTTTTCTTGAGACCTTTTCCAGGATAATACATACTTTTTTTTA
TAAGAATGATGTAAATCCATTTCATCATGGATATTCTTAACTTAACCTAA
AATATTATTTATAGCATCCTTAGGTTAAGATCTAAATCTTAATTTTTTGG
CCATTTTCATCATGGACATTCTTATAAGGTGTATTCTTATATAAAAAACG
TTGAATGTCCGTTTAAGGTCTCTTTTAGCTATTAACCACTTCAGTTGTAA
AGAAGCTCGCATGCACTGCGGCGGTAAGTTTTAAGTGGAAAAATTTCTCA
GAAAAAGGCCAAAAGTTTTCATTTTTGATTCTTAATCTCAATAGATTTAA
AAAAATTCATGAGTATTGAAAAAAGGGATAAACCTCCTTTATCTCGTCAT
ATATCCGCAGCATATTAAATTATTGAGCAGTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00024059-exon-sc0000471-1575043694:179158..179196 | TCONS_00024059-exon-sc0000471-1575043694:179158..179196 | Clytia hemisphaerica | exon |
| TCONS_00024059-exon-sc0000471-1575043694:177112..177222 | TCONS_00024059-exon-sc0000471-1575043694:177112..177222 | Clytia hemisphaerica | exon |
| TCONS_00024059-exon-sc0000471-1575043694:174202..174332 | TCONS_00024059-exon-sc0000471-1575043694:174202..174332 | Clytia hemisphaerica | exon |
| TCONS_00024059-exon-sc0000471-1575043694:173542..173658 | TCONS_00024059-exon-sc0000471-1575043694:173542..173658 | Clytia hemisphaerica | exon |
| TCONS_00024059-exon-sc0000471-1575043694:170962..172145 | TCONS_00024059-exon-sc0000471-1575043694:170962..172145 | Clytia hemisphaerica | exon |
| TCONS_00024059-exon-sc0000471-1510915933:179158..179196 | TCONS_00024059-exon-sc0000471-1510915933:179158..179196 | Clytia hemisphaerica | exon |
| TCONS_00024059-exon-sc0000471-1510915933:177112..177222 | TCONS_00024059-exon-sc0000471-1510915933:177112..177222 | Clytia hemisphaerica | exon |
| TCONS_00024059-exon-sc0000471-1510915933:174202..174332 | TCONS_00024059-exon-sc0000471-1510915933:174202..174332 | Clytia hemisphaerica | exon |
| TCONS_00024059-exon-sc0000471-1510915933:173542..173658 | TCONS_00024059-exon-sc0000471-1510915933:173542..173658 | Clytia hemisphaerica | exon |
| TCONS_00024059-exon-sc0000471-1510915933:170962..172145 | TCONS_00024059-exon-sc0000471-1510915933:170962..172145 | Clytia hemisphaerica | exon |
| TCONS_00024059-exon-sc0000471-1491911889:179158..179196 | TCONS_00024059-exon-sc0000471-1491911889:179158..179196 | Clytia hemisphaerica | exon |
| TCONS_00024059-exon-sc0000471-1491911889:177112..177222 | TCONS_00024059-exon-sc0000471-1491911889:177112..177222 | Clytia hemisphaerica | exon |
| TCONS_00024059-exon-sc0000471-1491911889:174202..174332 | TCONS_00024059-exon-sc0000471-1491911889:174202..174332 | Clytia hemisphaerica | exon |
| TCONS_00024059-exon-sc0000471-1491911889:173542..173658 | TCONS_00024059-exon-sc0000471-1491911889:173542..173658 | Clytia hemisphaerica | exon |
| TCONS_00024059-exon-sc0000471-1491911889:170962..172145 | TCONS_00024059-exon-sc0000471-1491911889:170962..172145 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000471 | supercontig | sc0000471:170962..179196 - |
Blast
The following BLAST results are available for this feature:
|