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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024055 ID=TCONS_00024055|Name=TCONS_00024055|organism=Clytia hemisphaerica|type=transcript|length=752bp
CAACCAAATGCTACAATGATCTTTTATTCCGGGGTAAAGATTTCATTGTC
TGTGAAAATTTGTACGATGTGAATATCTGGAGGATGGCAATATACCACGA
GAACAATGTGTCCAAAGGTGTTCGTATACGGCGATGGGATGTGAGAAACA
ATATCCCGTTTCGATGTGGTGGTTTAGACCACTACGAATTGCTTGTGGAC
AGACCGCCTACGATTGCTTGAACAGGTGTAGACTGGTTCATGACAGTGTC
GGACGAAAAAGAACCATGTTTAAAGATTTCGATAAATTTGAAGAACAAAA
AAGAGATCTTTATGAAGATGCGAGAAGAGACAGAAGAATGGAAACCAGAC
GGCCACAACATGACGACTTCAATGAATTTTATGATTTCGAATTTGacaaa
tattaaattatttgaCACCATGACAGTGAAATTTTATCATTATAACAACT
ATATTCTATGCTTGACTATTTTAAACACCTCTGTCTAATAGCCCCGGTGT
TAGTTTTTCCATCActggggatgaaattttttatAGAAACCCCAATGGAG
ATAGAAGTTCTATTGTTCCCTGATCAAAAATTGTAgcggggatggttttg
aagcgcaattttttccattgaatttcaagttgggatgaaataaaaatcaa
tttccaaGTGGGAAGAAATTATAAGATATTTTTCCGGCGAGGACAAAATG
TGgggcaattttccagtggggctggggtccgaGCGGGTCTGTGAAACAGG
TG Run BLAST on NCBI transcript from alignment at sc0000471:164837..174319- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024055 ID=TCONS_00024055|Name=TCONS_00024055|organism=Clytia hemisphaerica|type=transcript|length=9483bp|location=Sequence derived from alignment at sc0000471:164837..174319- (Clytia hemisphaerica)
CAACCAAATGCTACAATGATCTTTTATTCCGGGGTAAAGATTTCATTGTC
TGTGAAAATTTGTACGATGTGAATATCTGGAGGATGGCAATATACCACGA
GAACAATGTGTCCAAAGGGTAATTATCCGATCCCAGCTGACACACAACGT
TATTTCAACGTTCATCAACGTTATGTGGACGTTGTGAACGTTAGATAAAC
GTTGAAACAACGTTGTGTGCCAGCTGGGGTATTTTAGATTGGGGATTCAA
TAGATTGCTTAAAAAGAATGAAAGTCGGCCTGAGATATGCTTCATCCCTT
CAATACTCTTGTCTCCCGAATAGACGCCCCCCTGCTAATTGTTAAGAGAA
ACAAAGCCATCCCCCGCTCTTATTAAGACCCCCCTAATTAAATTCGACTA
ATTCAATATTTTATTACAGTGTAGATAGACCTTAAACTTGTTAAAGTTTT
CATTTTTGTTAGTATTGGTTCTTATTTTACGTGTTCATTTCTTTTTTGTT
GTTGAAATTGATATCAGTTAAAAAAAATGCTGTCTTCAAATTCCCCCCCC
CCCGCTTATATTCCATCCCCACGCTAATTAGAATTTAGAAAACTGCGTTC
GCAGACTTACTTATCGCTACTTGGGTTTAACTTATCGGTATCGGTAACTT
TTTATTTTCAGTGTGCAGATATAGCGATAGATTGTGAAAAACAATACCCC
TCTTGGATGTGGTGGCTCAAATTTAAGCGAACTGCTTGTGGTACCAATGG
TTATAAATGCTTGAATGGATGTAAACAGGTGGGTAGCATATTTTTAATTC
ATTCTTTATATTTTAGCTGTCGAAGCCTCTTGTTCTTGTACACGTTTTTC
ATAAGAACTACATAAGAACAGGCTTTGAGGACAAAATACCATTAAGAACA
AGATGTTAAGAACATTTAAGGCTTTGCAGACCCTAAAACACCTAATTTCT
TGGAAAAATGAACAAAAAAACTCACAAAATGGTGAAAATAAGAACATGTT
GAGAACATTTAATCCTGTTCGTACTAGGGGGGGGGGTGTTTCTGTTTGGT
AGTGAAACTATTGTTAAAAGCTCCTGAAATAATACAGCTTTTGGCATGAA
ATTTTCTGTAAATTCATAACTTTTATTTAGCTTCAAAATAAAAACAAATT
TGACACCTAAAAATTTTCACACCTTGAGCATGATGACATTTCTGACAGTA
AGGTGTTACAAAATTGACACATTTCCTTACCAGTTTACCTTTTATGTCAA
ATATATCGTTTAACCCGTAATTTCTTGAATATTTAGGATAAAATAGCCAT
TTTAGACGCAGGGAACATTTTCTAAAGCCTTTGTTTGAATACAACAGCTA
GTTATAAGAACAAAGGAAATTTTCGGTTTTTGCTCACTTTGGGCATGATG
AGTGACGTCATCAACAATATTTTGTCAAAACTTACCTTATATAAGAAGAA
TCTTGTGTTTCAAATTTCATCCAAAAGAACAAATAGATCATATAAGTAAT
GGTGTGGTGCAGGAACACCCCCTAGTTTTGAACCGCCCCTTAAAGCCTAG
TATGAATAAGTTTAAAACTCCAAAAGCTAAGAACATCCGAAAGCTTCAAA
ATTTTGGATATTCTTATAAAAAATGTGTTTTTTTATCTGTCGAAGCCTCT
TGTGTTCTTACATAGTTTCTTATTATAAAAAAATGGACCCTGCGTGGGAA
TCGCTTTTTCAAAAATTTTGCCGACATTTGCGATAAAAATGTCCTTGAAT
GGGACTAAAATTCCCAAATTTTCTCAGATTTTCTACTTTTCCCAAAAATT
TTCCAAAATAGACACCCTACGAGGGACTGATTTTNTTCAAAAATTTGCGA
AAAAAATGTCCTTGAATGGAACTAAAATTCCCAAATTTTCTCAGATTTTC
TACTTTTCCCCAAAATTTTCCAAAATAGGCACCATACGAGGGCCTGATTT
TTCTATTTTGGTGTTTTTGCGACCCTACCTGGAACTAGTAAAGGTTAAAA
AGGTACCCTGACCAGCGGTGCATCCCCGTAACACATTTTACCCTATCCCC
CCCCGGTGAAAAACACATTATTTGGAAGTGAAGATTGAAATAAGCACTGG
TGGGTGTTTTCGAATGATGATCGTTTCCCTTTGAAATTACATCTTCAAAG
CAATTCATTTTGTCAATTCTTTAGAAACATGACAGCGCTGGACGAAAAAG
AACGATGCTTAAAGATTTCGGTCAATTTGAAGAACAAAAAAGAGGTCTTT
ATGAAGATGCGAGAAGAGACAGAAGAATGGAAAACAAACGGCCACAACAT
GACGACTTCAATGAATTTTATGATTTCGCATTTGACAAATATTAAATTAT
TGTCGAAAATTTGTTGTACATTGTTTCCTTTTGTTATCGAGCACTATTTT
CTTCATCGTTCTCCATGATTTGATTTGATTTTTTTGTGCACGAAAGTTTT
TATTTATATCGGGTACTATATTGAAGACGGTGAGTTTTGCACAATCTAAG
ATCAGATTGGGTTCAAAAATCTGGTAATGTCCCGCACCATGTCAATTATT
TGTTCTATCTCGAACCCAAATTAAGAATTCATTGTCTCTTGTCACATTGT
CACACCACACACCTATGTATCAAACCCCAACTTTTAAAAATTATTTCACT
GACATCAATTTCCATTTTCCTCGCGGAAAACTTGTATGCTTAAAAAACGT
TCCATTCTCCCGCCAAAACTGATTCTAAACGTTTCCAAAATGGTGGCTGT
GAACAAGAGCATCTTATTGAAGAAGAGGCCGGTAGTAAGCATGTTATTAA
AGAAGATTTTTCAATTTGAGACATTTTGAGAGCGGAAAAGGAAAAAAGTT
GGATTGGCCACTTTATAATCATTTAATTGACTATCATTTTAATGGTGTTT
ACTTTATCTTATGTAAAATCTTTTGTAATTTTTTTCTTGAGACCTTTTCC
AGGATAATACATACTTTTTTTTATAAGAATGATGTAAATCCATTTCATCA
TGGATATTCTTAACTTAACCTAAAATATTATTTATAGCATCCTTAGGTTA
AGATCTAAATCTTAATTTTTTGGCCATTTTCATCATGGACATTCTTATAA
GGTGTATTCTTATATAAAAAACGTTGAATGTCCGTTTAAGGTCTCTTTTA
GCTATTAACCACTTCAGTTGTAAAGAAGCTCGCATGCACTGCGGCGGTAA
GTTTTAAGTGGAAAAATTTCTCAGAAAAAGGCCAAAAGTTTTCATTTTTG
ATTCTTAATCTCAATAGATTTAAAAAAATTCATGAGTATTGAAAAAAGGG
ATAAACCTCCTTTATCTCGTCATATATCCGCAGCATATTAAATTATTGAG
CAGTCGAGATGGTTTTGTGCTCAAAAAAATAAGAGGATACCTTGGTGAAA
CTTTCAAGTCGAACCAAAAAAATAGGATACCTGGAGGGAGCATTACTAAA
AAATCATGGTTTTTTCGTGGTTTTGGTCAAATCTTTCCCTAAAAAAATAG
CTTTTATGGTAGATTTTTTCGGGTATCTTTAATTTCAGCCTTTCATTTTT
TCATCTAAAAAAGTTATATAGACAATTATTAAAAAAAAGTTATCAGCGAT
TGAAAAAATAGTGAAAATTCCGTAAAAGAGCAAAACTCACTTAGTTTAAA
CAAACTGAGTTGCTAGCTCACCCTTTTTAAACAAAAAATCGTCGTTATGC
CTCTGCAGTCAAGACACGATTTCAAAGGGTTTAATGTTTTAAGTCTTCTG
AGACAGGTTTTTAGTATCACCATTGTTTAAACTAATTAATATCATTGCAA
TGATATATGGATTGTGTATTTAAATTTGATGAATTAATCGGTCTACTGTA
AAGTCAGTAATCCACTTAAATTAGCTCTTGTTTTTCCTTTTGTATAAGCA
GGTTATAAAGGCACTTCGAGGGCATGTATGAGAGAACAAAAGAGCAAGGA
TAAGCGGATCAGGAAACAAAAAAGGTCGCTGTGAGAAAGGGATGTTAAGG
TCGCCCCAGCTGGCACACAACGTCGTTTCAATTTTTTTTTGTTCTAATGC
TCACAACGTCCATATAACGTAAGATGAACGTTGAAACAACGCTGTGTGTC
AGCTGGGTGGTTAGCTAATCCTTGATGGTAAAACCATAGTAATATATAAT
GGACCATTGTTTTTGTTTCAGCGGGAGCAAGAAGTCCTTCCACGTTATCT
TATATCGTCACCAAATGGGAGATCAGTAATGGTAGAAAATTAATCCTTTT
TTGCATAATTCTTGAGTCTAATTAGGTTAGGACAAATAGAATTATTCAAT
TCTTATGTACTTAGATACTGCACCGAAAGCCTACAAAACAAATAAATAAA
AATATATTCAACAAAACATCCTGTATGTCTCACAAAGATTTTTAGCTGAC
AAGAGAGCAACAGCTGGTAAGAGAAGTGATGGAATTAAAAATGAAGTCTT
TGATTGTACTTTTAAGTTTGGTAATAACATATGCAAAAGGTAAAGAGATA
TTTAGGTATACTTTTGTCAACAAACACTAGGTTTTCCTTCCCAGCTGACA
CACAACGTTGTTTCAACGTTGATCTAACGTTATATGGACGTTGTGAATAT
TAGAAAAACGTTGAAACGACGTTTTGTGTCAGCTTGTGTGGAAAAATACC
AATTTTTAGCGCTTTTGACTTTGAGCTTCTTACAAAGTCTTCCTGGAAAG
TAGACAAACTCCTTCAAATATTTTTTCTGCATTTGGTCTGTACTAAATTT
GGTCTTATTTGTGTGGATATTCATTCGTAGTCTAAACTCAACTAATCAAC
TCTTCAGATGACTCCAAAGCTGAAAATTGACGAAAAAAAAACAAATTCAA
AAATTTTGGTTGCTAGGCAACCTAGGCTGGTTGCTAGGAGCAAAATATCA
TTAGCTTTTGAATATGTATTCACAGACTCTACATTTTATATGCTTTCAGA
AAATATATAGTTTTACAGGTGTATATAAAACCATCAAAAAGTCATTCTTC
ATCGCATTCGCCTAAAAGTCAAGGAACCCTAAAATACTAAAATAATGTGC
GGATGCAAAGGGTTAAAGTATAAACTGTTTGAATGGCTTTTATCAAGCAC
CTTTGAAACTCCTTAACTAAAATATATCCAAAAGATGAGGTAATATTGGC
ATGTTCCATAATGTGGATGCGTAATTTCTATGGACACTTGTCTTTACGCA
CACCCTGAAAAAGACGTCAAAACAACGTTTTTCTAACATATTCATAACTG
TCATTTAAGTCGAGACAGCGTTCTATGTTTGCTGGGTACTTATTCAATTT
TTAAATCATATCATCTCATTTTTCAGGTATTGCAGCTCAAGGACCTGTGA
GTAAAATGCAATTATTTCATTAAACATTAAAAAGTTTATTTTCAACCCCT
TGCATTTTATTTTAAAGCTGAGAAATTAAAATTTCAAGTAATGGTAACAA
TTCTTCAGCCCCTACTCTCGGATACCTAATAGCCGCCCCCCCGCTAATTT
GTAATTAATTTTTCAAAAATTTTCTACCCAGGACATTTTCATTTTAACCC
CTCCGCTTATTCTAACCATCCCGGCTATTAGGTACGCGCTCGGGTGAAAC
AAGGCATGTCCCAAATATATTTTGCGTGACGCACACCGCTTCCCATTATA
CATTAACTTTCATATTTAGCTCATATCGTCTCAACGAGAGGATTTCGAAA
AGTGCTGGGTCAAAAATTTACATCAAGCCAATCTCAAGATATCGGTCAAA
AACTGATTTTGACGTTATCAAATACATGGAAAAAAACACGTCAAAAAGAC
AATTTAAATGACGTCATTATTGAAAAAAGGCGATAATTCCGATTAACTTA
CTACAATCAAAGTAGAGTTTTGACTGGAGATGTAAATTAACGATTCTAAA
ATATTTCATGAAAAAAAATTGAAAATTCATGATGACCTCAGCATTTTTTG
ACGTATTTTTATTTTTCCCGACAACAAATGACGTCATTCAAATTTTCTGA
AAATTTTTGAACAAATATTTCAGAATCATTAATTTACAACTCCGGTCAAA
ATTTGGTGTTGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTGAACACAAA
CTTCCGTTATCTTAAAAAGACATATCATCGAGGCTTACAGACACAAAATT
TTGACTAATGTAGAAAGTTTAGAAGTATAATTTTTAATATTGTATTCGGC
ATTTATTTTAAGCCAAAACGATGTCAGGAATTAACCCACATTGTAGTATT
NGATATGATTCTTTTGAGCTATATATGAACGTTAAGGAATAATTGGAAGC
GGTGCGCGTCACGCAAAATATATTTGGGACATGCCTTGTTTCACCCGAGC
GAAAGTAAATATTGACGAATGTGCACGAAATCTATTATTCTGTCACTTAG
GGAAATAATTGTGAATATTTCCCATAGTGTGGTGGCTTGGGAAGCAAATG
CAAGACAGATCTGTTTTCGGGTGCAGATTTCAATGTTTGTGAAAAATTTG
TGCGGTGCGAATATCTGGAGGATGGCAATAAACCACGAGAACAATGTGTC
CAAAGGGTGAGATGATAAATTTGTAGCCTATTTTGTTAACTACCAAGTTC
ATTGTCTATAGTCAGGGTTATCCCTTTGTAAGCGCTGTTTTTTTTTTGAA
AAAGTTAAAATTGTTTGTTTTTCCTCTAGTATTTGGATTGGAATTTTTTT
GGTTTTACTAAATTTAATTATAAACTGTACTGAGAATTTTAAAACTGTAA
TGCACTTAAGAGGTGCCCTATACAAATCTTTTTATAAGAACAAACAGTAT
AAGAACATAAGGCTTCGATGACCAAAATACTAAGAACATACTTAAAAACA
TTTTAAGGCTTCGTGGTCTCCAAAAGGCCCTATTCCTTAGGAAAATACAC
AAAAATACTCAAAAAATGGCGAAAATAAGAACAAGTTAAGAACATTTTTA
GGCTTAAAACTCAAAAAGTTAAGAACATTCTAAGATCCAAAAATTCTTAT
AAAAATAAACTGTATATTAGAATCTAGTTTATACGTAAGAAATCTCAGCG
CTTTTGAAATTTTAGAGAAGACGTATATATTCATCAACTAAATGTCTTTC
TTGTTTTCCAGTGTTCGTATACGGCGATGGGATGTGAGAAACAATATCCC
GTTTCGATGTGGTGGTTTAGACCACTACGAATTGCTTGTGGACAGACCGC
CTACGATTGCTTGAACAGGTGTAGACTGGTGGGTGTTGTGGCGTCAAAAA
TTTGGCGCCCTTTAAAAGATATTCTGTTTTTCTAGTGAGGATTGGAGTGG
AGTGTTTTCTGCACCCCTCTCACCCCAATAACAGAGTTATGCAAGAAAAA
TTATTTATTCCCAATACAATGCAATGCAAAAGAGACTTATGAAAGTCAGC
CTTTTTTGTAATTAATAAGGACTTTTTTACGTTTTAATGATCGCTGCCTA
AGCTGGGTTNCTTAGGAAAATACACAAAAATACTCAAAAAATGGCGAAAA
TAAGAACAAGTTAAGAACATTTTTAGGCTTAAAACTCAAAAAGTTAAGAA
CATTCAAAGATCCAAAAATATATATTAAAATCTAGTTTATACGTAAGAAA
TCTCAGCGTTTTTGAGATTTTAGAGAAGACGTATATATCTTACTATACTA
AACGAGTTTATGAAAAATGTCTGTAACGCTAGCCCAGTAACNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTACACTGCTATTTGTAAACG
AAAAAAGTTCTGACGTCAATTTCATGAAAAAGTACTGCGACGTCACAAAG
TTTCAAATAAAAAGGTGTGGCATTTTTATTGCACGATTTCGAATTATTTT
ATATCAAAACACGCAACAAAATCCAACATTATTGTTTGATGATTAAACTT
CGTCTAACATTATTTAAAAAGGTTTCAATGTTGGTTGCATTGCATATGCA
CCGGTCTTAAGCTGTCTGCATGTGAAGCCAACAAACGGGAAAACCTTCAG
TGCTCAATCGCAAAGCGCGATCCTCTCCTTCACAACTAAGACTTTTTCTT
TCCTAGAAGCAANCAATATTGTGTGCCAGTTGGGTATCCAGGAAAACATT
CAACATTCTAGATTATTCTATTCTAGATTATTAAAAGAAATTTTGTATTT
CATTTTATTTATTCAGGTTCATGACAGTGTCGGACGAAAAAGAACCATGT
TTAAAGATTTCGATAAATTTGAAGAACAAAAAAGAGATCTTTATGAAGAT
GCGAGAAGAGACAGAAGAATGGAAACCAGACGGCCACAACATGACGACTT
CAATGAATTTTATGATTTCGAATTTGACAAATATTAAATTATTTGACACC
ATGACAGTGAAATTTTATCATTATAACAACTATATTCTATGCTTGACTAT
TTTAAACACCTCTGTCTAATAGCCCCGGTGTTAGTTTTTCCATCACTGGG
GATGAAATTTTTTATAGAAACCCCAATGGAGATAGAAGTTCTATTGTTCC
CTGATCAAAAATTGTAGCGGGGATGGTTTTGAAGCGCAATTTTTTCCATT
GAATTTCAAGTTGGGATGAAATAAAAATCAATTTCCAAGTGGGAAGAAAT
TATAAGATATTTTTCCGGCGAGGACAAAATGTGGGGCAATTTTCCAGTGG
GGCTGGGGTCCGAGCGGGTCTGTGAAACAGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024055-exon-sc0000471-1575043694:174202..174319 | TCONS_00024055-exon-sc0000471-1575043694:174202..174319 | Clytia hemisphaerica | exon |
| TCONS_00024055-exon-sc0000471-1575043694:166492..166608 | TCONS_00024055-exon-sc0000471-1575043694:166492..166608 | Clytia hemisphaerica | exon |
| TCONS_00024055-exon-sc0000471-1575043694:164837..165353 | TCONS_00024055-exon-sc0000471-1575043694:164837..165353 | Clytia hemisphaerica | exon |
| TCONS_00024055-exon-sc0000471-1510915933:174202..174319 | TCONS_00024055-exon-sc0000471-1510915933:174202..174319 | Clytia hemisphaerica | exon |
| TCONS_00024055-exon-sc0000471-1510915933:166492..166608 | TCONS_00024055-exon-sc0000471-1510915933:166492..166608 | Clytia hemisphaerica | exon |
| TCONS_00024055-exon-sc0000471-1510915933:164837..165353 | TCONS_00024055-exon-sc0000471-1510915933:164837..165353 | Clytia hemisphaerica | exon |
| TCONS_00024055-exon-sc0000471-1491911889:174202..174319 | TCONS_00024055-exon-sc0000471-1491911889:174202..174319 | Clytia hemisphaerica | exon |
| TCONS_00024055-exon-sc0000471-1491911889:166492..166608 | TCONS_00024055-exon-sc0000471-1491911889:166492..166608 | Clytia hemisphaerica | exon |
| TCONS_00024055-exon-sc0000471-1491911889:164837..165353 | TCONS_00024055-exon-sc0000471-1491911889:164837..165353 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000471 | supercontig | sc0000471:164837..174319 - |
Blast
The following BLAST results are available for this feature:
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