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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024049 ID=TCONS_00024049|Name=TCONS_00024049|organism=Clytia hemisphaerica|type=transcript|length=2997bp
TAAAGACATAATACAATTATTGTAGTCTGGTTTTCAAACTATCTTTGCcc
tatttaaagaaatttccgTAAGCGGCATCGAATATTTACTTCAGAGGTTC
AACGACAAGGAGGAAAGTTTGCTCTAAAGATTGTCAAAGATGTTAAAGTT
GATCTTTTTTTCAACATGCTTTCTAATGCTCTTCGCCAAAATAAATGCAG
gTAGCGACCCATTGCAGGGACCGTGCAAATTTAAGGCGATTGGTTGTAAA
GTTGCTTTGGAGGGCGGTTCCAGCTTTCGTTCATGTGAAGGCTTTGTGAA
CTGTGAATACCGAAAAACACCATGTGCAGGCAAGtgTATCTCGATTGCTT
TGGAATGTGAAAAGGGATTACCTCCAGCATGGATGTTTTGGCTGAATAAT
CGAGGCGAACGACGAAAATGTGCTGAGGCAGCATATCATTGTTTACAACG
ATGTCCCAAGACCTATGGTAGCAGAAAACGGGCTTTGGAAAGAAGTTACA
GACTCGATGAGGAAGAAGGGTCGTTTATccgaaatgaaaatgaagaattt
tataAGTAATTTTACAGAGAGaaacatttttgaactttgtaccgaatatt
tcactgaatatttttgtaacattttgtGAATTATTTGAGATCTTTTTTCA
ATCTATCTAGGATAAATGTATTCCAATTTCCGTTATTtactagcccgggg
tccacttagagctttttttatagacttgatggcgctgataagtggcccgg
tagtataatGCTTATATAATATGCTTatacagtccgccagattttagttg
tttatGGAAGTAAAAAACGTATGAAGCAaggtttttatttgagaataatt
tttgatgatatctttcaactccaagtagttttatttttatttggattttt
tacattttctctcaaaatggcgacctcgccaaacactcctagtctacttc
actggactcagcgtcataaaaaaattatcgaaaagcaaagttcagtcaga
agtggACTCTAGTCTAGTTATTTAcaggaaaattgaaactttaatTTGAA
CGTGTAAGTTTTTATAGTAAGTACTGTATatcatttttctattttaacat
attttttttactgCAATGTAAAAATTAACAAATTGTTATAATCATGTAAA
ATGTAATCAACAAAAATTAACAAACGGAAAGAATACAGTCCCAAACTTTT
CATTCAACGCTTGATCGAGCTCTTTGAGAAAATATCCGTatacaatagac
gatatcgcgtttagataaatgcaatgcattctggtttctcggggaccctc
aagggaattataatctattccagatcattatataatcgacattataattt
tttgagagtccccgagaaaccagaatgcattgcatttatctaaacgcgat
atcgtctattaatgGAGGAAAGTATTCGCATTTTTTGTCCGGCAAGTGTA
AAAAAATATAGCAGTCGTTCAAAAAATGTTCGAGAAAAATTTgttatatt
cttaatttttgttcTGTTAGAGCCCATATTTTGCGTTTTGCGAAAAGAAT
CTATGATATTGTAGCCAGGAGGaacctgattttttgctcaaacgACGTTG
ACAAAAAATAGAGGAAAATGCTTTTCGTAAAAACAtatttaaatctaaaa
aattcaaaaatatctttaaaaacctaacctagaaaaaaatatacaccAAT
AGTTGGATTAGAAAAAATTTCGGACTGAAATGTTTTTCGGACGACCATGA
GTTTTCAtcctacacatttttttaaaagaacatccaaagtttttgaagcc
ttcggatgttctttaactttttgggttttaaccctaaaaaagttcttaaa
atgttcttattttcaccatttttgagaCCATTTTTACCTATTTTCCTGTA
AGAAATttgctgttttagagtccgcaaagccttcttaatattttggccat
cgaagccttatgttctcatatagtttgttcttataaaaaacgtgatgTAA
TGAGGTAAATCCATCTAATACAGTGAcatgggtgttatatgataataatA
CGATCATTGCAACGGGATAGTATCAGCAGCGTGTATAATTTATCCCTTCC
GTTATTTTTTGCCTGAATTAGTAAtttagcatgctagactacGTTTTTGA
TCGAATGTCCTTTCAACATCCATTATGGAGCGATACACCAATTTGGTAGC
CTTAAAAAAATCTCATCATGTTGATATCAAAGTGAGATGTGTgagaaatt
caataaaaataacTCTAAGCTTTTAATGTGGTGACGCGGTGGTGATGCGA
TTGCATCGATTGCATCAGTAAAACCATTGGGGAGCGAAAAGATATCTTTT
TGCATTACAGAGAGGCCAGAAAAGAAAATGTCACCAAACACCAAATTTAT
GCAGTTTCTTATTACGTGATTCCATTTATCGCTTTTTTcaaaagacgaaa
gacatgctTTGCGGTTACATACGCAAACTGCAAAGGTTTCAccaatttat
tttctaatttttgttgttgtttttttcacccgatacgtcacttacaactt
AATCACCTATtttaaaagtgacgtaatgcAAGATAACATTGTGCATATCC
TGAAAAAAACTATCAACCCTTAACGCTTTTGAGGAGACTGGTAAcaaaaa
tacaaggaaaattcTTCCCGATGACGGTATCGAAAACGCAAGTGTAAGAG
AGCTCttctgaaaaatgtaaaataccattgcattgaagcggtaAAGTAAC
Gtcaatagcgagattatgtatctggaattctctacggctacggctaaagt
ggcgagggaaatggcgagtaaggcaagtaatggcgggtgaaagcaagttc
gatatttaaagtacggcattatgtcgactttgcttagacggtgttttggt
gtttttcccgtacagagcaaactAGACAatgacatgtcgcctttggtgac
gacccgtatgggcagccccgcaaccgtagccgtagagtatctccgat Run BLAST on NCBI protein sequence of TCONS_00024049-protein >TCONS_00024049-protein ID=TCONS_00024049-protein|Name=TCONS_00024049-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MLKLIFFSTCFLMLFAKINAGSDPLQGPCKFKAIGCKVALEGGSSFRSCE
GFVNCEYRKTPCAGKCISIALECEKGLPPAWMFWLNNRGERRKCAEAAYH
CLQRCPKTYGSRKRALERSYRLDEEEGSFIRNENEEFYK Run BLAST on NCBI transcript from alignment at sc0000471:179484..184357+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024049 ID=TCONS_00024049|Name=TCONS_00024049|organism=Clytia hemisphaerica|type=transcript|length=4874bp|location=Sequence derived from alignment at sc0000471:179484..184357+ (Clytia hemisphaerica)
TAAAGACATAATACAATTATTGTAGTCTGGTTTTCAAACTATCTTTGCcc
tatttaaagaaatttccgTAAGCGGCATCGAATATTTACTTCAGAGGTTC
AACGACAAGGAGGAAAGTTTGCTCTAAAGATTGTCAAAGATGTTAAAGTT
GATCTTTTTTTCAACATGCTTTCTAATGCTCTTCGCCAAAATAAATGCAG
GTAAGTAGAAATCCGGCTTGCCCGAAAGAAAAGAGCTGTCAAGAAGGATT
GGTCTAGGGCGTCAGCGAGTGAAACCAGGGattcgcggttcgaatccccg
ctccttccaatggtccgttcagttcatagattgCCAAGCCAGCTGGATGC
AgacccgtgaaaacaatcgaaagattacctaaaagtcctagataaCAGAG
CTATCtccgtaaaatatcgactctgtCTATCTAAAGATTAACATTATTGT
TCAATGATTCACTCctagaaaattagatttttaccCTCTTGGACACATGC
TTTACTCCTTCATAAAAATTACATCGGCCTCCCTGGAAACTGAAATTGAC
TCCCTAGACAACATATCTTTTCACTGTGAACGAGTTTATTTCTGTTTGCC
CATTAACCCTTTAGAGCACCTGGGAAAATGAAGGATATGATATCCAACTT
CAGCCCTACTTAGGGCTATAACCAAAGCTTTTTACCCTTAGGAGGCGAAA
Gacatatatacgttttgaaaaggttaccgatacacagtcttttggtcata
actcctgaccacttgagatcaGAGAAAAAGAAtcgctattttttgtagct
gagagaaagagctttccaacgataccaaagttgatacctgaatcgtttgt
cctggccAAGAAATAGCctttaaaagaataaatttccagaaaaaaaatga
tgaactttttggcctttttcaaaaaagttagcggctttgaaaggttaacc
GAGAGATGGcatacaaattatatttaaatatttttctttcttctttaggT
AGCGACCCATTGCAGGGACCGGTAAGTCGAAAAATTTATGtaaacaagag
ccacaaagatgcggataaagcCATGGCGGTTATTCAGTTATCCAGTGATT
CGAAGAAGTTTGAGATCAACgcaaacaaacgattttctctCTGTTACAAC
tagatttattttgtttttctttaaaaaaattcaagcacagttgactctct
ctaatccgatcttcaaaatgtttattcgaattagagaaagatgtgattta
aaccactttccagcAAAGGAGACTGATATttcagttcgaattacagaaaa
atttgaataaataatggagtttcgaattagagagagttgaatTTATTTTC
GTTATAGTGCAAATTTAAGGCGATTGGTTGTAAAGTTGCTTTGGAGGGCG
GTTCCAGCTTTCGTTCATGTGAAGGCTTTGTGAACTGTGAATACCGAAAA
ACACCATGTGCAGGCAAGGTGCGCAATAgtctatattattattattcaat
ATTCGTGTTTATTTTCTTCCGAAACATTCACAAGTCCGGTAGAACTTTAG
TAACACTGGGAAATTTGGCCAAGAATTTGTCTCGATGGTAGAAATACTCT
ACAATTTCGGCCccattttatctttattttcattcccatttgaaaatcaa
tagaaaaaaatacactaccaaaccatccccactgagtTTTATGACCTGAG
AACAATAGACCTTTCTGACACCATTGGGATTCAGATAGAAATTTTCACTA
TCACTGTGGGcagaagttccaccggggttgCGGGGTGttttatttaagta
tttgaTAAATATATAGAATAAAAGGTTGGCTTTATGTTCATCGGCAGAAA
ACCCaggttttatctttaaaatcaatgttTAGGATAAACCCTAGCCCccg
taggctacgtcatatctacCTTCGTTCCGAGCGTAAAACGCccatagcag
tgcctatagaccaagaggaAGGCCAAAAGCCTGTAACTGTCTATCACGTA
GACTATAACCCATTGActtctaagcccgaagggctagactcgagactcct
ggatgggaagtgaagccacttatttcttatccagaacgcccgcgcgtggt
tgaAAGCCTGATTGAAAGTAaagtctatcgctagatttcaaaagatGCAG
TTACACAAAGTGTAAGAACTGAATGGGCTTTCTTCAGCAtgatgattttt
tatatttttagtgTATCTCGATTGCTTTGGAATGTGAAAAGGGATTACCT
CCAGCATGGATGTTTTGGCTGAATAATCGAGGCGAACGACGAAAATGTGC
TGAGGCAGCATATCATTGTTTACAACGATGTCCCAAGACCTATGGTAGCA
GAAAACGGGCTTTGGAAAGAAGTTACAGACTCGATGAGGAAGAAGGGTCG
TTTATccgaaatgaaaatgaagaattttataAGTAATTTTACAGAGAGaa
acatttttgaactttgtaccgaatatttcactgaatatttttgtaacatt
ttgtGAATTATTTGAGATCTTTTTTCAATCTATCTAGGATAAATGTATTC
CAATTTCCGTTATTtactagcccggggtccacttagagctttttttatag
acttgatggcgctgataagtggcccggtagtataatGCTTATATAATATG
CTTatacagtccgccagattttagttgtttatGGAAGTAAAAAACGTATG
AAGCAaggtttttatttgagaataatttttgatgatatctttcaactcca
agtagttttatttttatttggattttttacattttctctcaaaatggcga
cctcgccaaacactcctagtctacttcactggactcagcgtcataaaaaa
attatcgaaaagcaaagttcagtcagaagtggACTCTAGTCTAGTTATTT
AcaggaaaattgaaactttaatTTGAACGTGTAAGTTTTTATAGTAAGTA
CTGTATatcatttttctattttaacatattttttttactgCAATGTAAAA
ATTAACAAATTGTTATAATCATGTAAAATGTAATCAACAAAAATTAACAA
ACGGAAAGAATACAGTCCCAAACTTTTCATTCAACGCTTGATCGAGCTCT
TTGAGAAAATATCCGTatacaatagacgatatcgcgtttagataaatgca
atgcattctggtttctcggggaccctcaagggaattataatctattccag
atcattatataatcgacattataattttttgagagtccccgagaaaccag
aatgcattgcatttatctaaacgcgatatcgtctattaatgGAGGAAAGT
ATTCGCATTTTTTGTCCGGCAAGTGTAAAAAAATATAGCAGTCGTTCAAA
AAATGTTCGAGAAAAATTTgttatattcttaatttttgttcTGTTAGAGC
CCATATTTTGCGTTTTGCGAAAAGAATCTATGATATTGTAGCCAGGAGGa
acctgattttttgctcaaacgACGTTGACAAAAAATAGAGGAAAATGCTT
TTCGTAAAAACAtatttaaatctaaaaaattcaaaaatatctttaaaaac
ctaacctagaaaaaaatatacaccAATAGTTGGATTAGAAAAAATTTCGG
ACTGAAATGTTTTTCGGACGACCATGAGTTTTCAtcctacacattttttt
aaaagaacatccaaagtttttgaagccttcggatgttctttaactttttg
ggttttaaccctaaaaaagttcttaaaatgttcttattttcaccattttt
gagaCCATTTTTACCTATTTTCCTGTAAGAAATttgctgttttagagtcc
gcaaagccttcttaatattttggccatcgaagccttatgttctcatatag
tttgttcttataaaaaacgtgatgTAATGAGGTAAATCCATCTAATACAG
TGAcatgggtgttatatgataataatACGATCATTGCAACGGGATAGTAT
CAGCAGCGTGTATAATTTATCCCTTCCGTTATTTTTTGCCTGAATTAGTA
AtttagcatgctagactacGTTTTTGATCGAATGTCCTTTCAACATCCAT
TATGGAGCGATACACCAATTTGGTAGCCTTAAAAAAATCTCATCATGTTG
ATATCAAAGTGAGATGTGTgagaaattcaataaaaataacTCTAAGCTTT
TAATGTGGTGACGCGGTGGTGATGCGATTGCATCGATTGCATCAGTAAAA
CCATTGGGGAGCGAAAAGATATCTTTTTGCATTACAGAGAGGCCAGAAAA
GAAAATGTCACCAAACACCAAATTTATGCAGTTTCTTATTACGTGATTCC
ATTTATCGCTTTTTTcaaaagacgaaagacatgctTTGCGGTTACATACG
CAAACTGCAAAGGTTTCAccaatttattttctaatttttgttgttgtttt
tttcacccgatacgtcacttacaacttAATCACCTATtttaaaagtgacg
taatgcAAGATAACATTGTGCATATCCTGAAAAAAACTATCAACCCTTAA
CGCTTTTGAGGAGACTGGTAAcaaaaatacaaggaaaattcTTCCCGATG
ACGGTATCGAAAACGCAAGTGTAAGAGAGCTCttctgaaaaatgtaaaat
accattgcattgaagcggtaAAGTAACGtcaatagcgagattatgtatct
ggaattctctacggctacggctaaagtggcgagggaaatggcgagtaagg
caagtaatggcgggtgaaagcaagttcgatatttaaagtacggcattatg
tcgactttgcttagacggtgttttggtgtttttcccgtacagagcaaact
AGACAatgacatgtcgcctttggtgacgacccgtatgggcagccccgcaa
ccgtagccgtagagtatctccgat Coding sequence (CDS) from alignment at sc0000471:179484..184357+ >TCONS_00024049 ID=TCONS_00024049|Name=TCONS_00024049|organism=Clytia hemisphaerica|type=CDS|length=1680bp|location=Sequence derived from alignment at sc0000471:179484..184357+ (Clytia hemisphaerica)
ATGTTAAAGTTGATCTTTTTTTCAACATGCTTTCTAATGCTCTTCGCCAA
AATAAATGCAGgTAGCGACCCATTGCAGGGACCGTGCAAATTTAAGGCGA
TTGGTTGTAAAGTTGCTTTGGAGGGCGGTTCCAGCTTTCGTTCATGTGAA
GGCTTTGTGAACTGTGAATACCGAAAAACACCATGTGCAGGCAAGtgTAT
CTCGATTGCTTTGGAATGTGAAAAGGGATTACCTCCAGCATGGATGTTTT
GGCTGAATAATCGAGGCGAACGACGAAAATGTGCTGAGGCAGCATATCAT
TGTTTACAACGATGTCCCAAGACCTATGGTAGCAGAAAACGGGCTTTGGA
AAGAAGTTACAGACTCGATGAGGAAGAAGGGTCGTTTATccgaaatgaaa
atgaagaattttataAGTAAATGTTAAAGTTGATCTTTTTTTCAACATGC
TTTCTAATGCTCTTCGCCAAAATAAATGCAGgTAGCGACCCATTGCAGGG
ACCGTGCAAATTTAAGGCGATTGGTTGTAAAGTTGCTTTGGAGGGCGGTT
CCAGCTTTCGTTCATGTGAAGGCTTTGTGAACTGTGAATACCGAAAAACA
CCATGTGCAGGCAAGtgTATCTCGATTGCTTTGGAATGTGAAAAGGGATT
ACCTCCAGCATGGATGTTTTGGCTGAATAATCGAGGCGAACGACGAAAAT
GTGCTGAGGCAGCATATCATTGTTTACAACGATGTCCCAAGACCTATGGT
AGCAGAAAACGGGCTTTGGAAAGAAGTTACAGACTCGATGAGGAAGAAGG
GTCGTTTATccgaaatgaaaatgaagaattttataAGTAAATGTTAAAGT
TGATCTTTTTTTCAACATGCTTTCTAATGCTCTTCGCCAAAATAAATGCA
GgTAGCGACCCATTGCAGGGACCGTGCAAATTTAAGGCGATTGGTTGTAA
AGTTGCTTTGGAGGGCGGTTCCAGCTTTCGTTCATGTGAAGGCTTTGTGA
ACTGTGAATACCGAAAAACACCATGTGCAGGCAAGtgTATCTCGATTGCT
TTGGAATGTGAAAAGGGATTACCTCCAGCATGGATGTTTTGGCTGAATAA
TCGAGGCGAACGACGAAAATGTGCTGAGGCAGCATATCATTGTTTACAAC
GATGTCCCAAGACCTATGGTAGCAGAAAACGGGCTTTGGAAAGAAGTTAC
AGACTCGATGAGGAAGAAGGGTCGTTTATccgaaatgaaaatgaagaatt
ttataAGTAAATGTTAAAGTTGATCTTTTTTTCAACATGCTTTCTAATGC
TCTTCGCCAAAATAAATGCAGgTAGCGACCCATTGCAGGGACCGTGCAAA
TTTAAGGCGATTGGTTGTAAAGTTGCTTTGGAGGGCGGTTCCAGCTTTCG
TTCATGTGAAGGCTTTGTGAACTGTGAATACCGAAAAACACCATGTGCAG
GCAAGtgTATCTCGATTGCTTTGGAATGTGAAAAGGGATTACCTCCAGCA
TGGATGTTTTGGCTGAATAATCGAGGCGAACGACGAAAATGTGCTGAGGC
AGCATATCATTGTTTACAACGATGTCCCAAGACCTATGGTAGCAGAAAAC
GGGCTTTGGAAAGAAGTTACAGACTCGATGAGGAAGAAGGGTCGTTTATc
cgaaatgaaaatgaagaattttataAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024049-exon-sc0000471-1491911889:179484..179683 | TCONS_00024049-exon-sc0000471-1491911889:179484..179683 | Clytia hemisphaerica | exon |
| TCONS_00024049-exon-sc0000471-1510915933:179484..179683 | TCONS_00024049-exon-sc0000471-1510915933:179484..179683 | Clytia hemisphaerica | exon |
| TCONS_00024049-exon-sc0000471-1575043694:179484..179683 | TCONS_00024049-exon-sc0000471-1575043694:179484..179683 | Clytia hemisphaerica | exon |
| TCONS_00024049-exon-sc0000471-1491911889:180482..180504 | TCONS_00024049-exon-sc0000471-1491911889:180482..180504 | Clytia hemisphaerica | exon |
| TCONS_00024049-exon-sc0000471-1510915933:180482..180504 | TCONS_00024049-exon-sc0000471-1510915933:180482..180504 | Clytia hemisphaerica | exon |
| TCONS_00024049-exon-sc0000471-1575043694:180482..180504 | TCONS_00024049-exon-sc0000471-1575043694:180482..180504 | Clytia hemisphaerica | exon |
| TCONS_00024049-exon-sc0000471-1491911889:180841..180951 | TCONS_00024049-exon-sc0000471-1491911889:180841..180951 | Clytia hemisphaerica | exon |
| TCONS_00024049-exon-sc0000471-1510915933:180841..180951 | TCONS_00024049-exon-sc0000471-1510915933:180841..180951 | Clytia hemisphaerica | exon |
| TCONS_00024049-exon-sc0000471-1575043694:180841..180951 | TCONS_00024049-exon-sc0000471-1575043694:180841..180951 | Clytia hemisphaerica | exon |
| TCONS_00024049-exon-sc0000471-1491911889:181695..184357 | TCONS_00024049-exon-sc0000471-1491911889:181695..184357 | Clytia hemisphaerica | exon |
| TCONS_00024049-exon-sc0000471-1510915933:181695..184357 | TCONS_00024049-exon-sc0000471-1510915933:181695..184357 | Clytia hemisphaerica | exon |
| TCONS_00024049-exon-sc0000471-1575043694:181695..184357 | TCONS_00024049-exon-sc0000471-1575043694:181695..184357 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000471 | supercontig | sc0000471:179484..184357 + |
Blast
The following BLAST results are available for this feature:
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