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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024018 ID=TCONS_00024018|Name=TCONS_00024018|organism=Clytia hemisphaerica|type=transcript|length=3060bp
GAAATCCCCGCGAGCCATTACTGCAGTGTCAGCATTTTTTCCGCTTCACT
CAGcagaaaaaatcgtgaaaaGTTCTACGAATCCCATgatgacaaaatga
aaaaacaaagatgTTGACAGTCTGAAACCTGACAATGTGGGTTTTTTTCG
AAGCATATTTGGTTAGTATTGCTGATTGGAATATGCAAGATAAGCAGGTT
TTATTTTAATAGTGTTGTTTGTCCTTATCATTTAGTAAAATTGCTGCTAT
GAGTGGTTTTTAATGCTGTCCAAAGATTTATTTTATTGCTAAAATTTGGA
CTTTCACCATCAATCAAACCAAGAGACTTTTAGCTAAATGGTTCcttgaa
agtttatttttctggtACCATTGAGAAGTATTGCTAAGTGCTTAGAATTT
ACTATTTGTTAAAGACTGTGTCCAATCACTGCACAAGAAAATGTCTACTG
ATCATCAAGAAGCTTCCACGTCAAGCTCAAGGAAAGTATCAAAACTGTCA
CATCAAATgtcatttgaaaatgaaattttcgatGAGGAAAATGATATAGA
TGGATCTTTTGGTCTTGAAGAATTATTTAATGAGGAAACCAATGAAAATT
TGAGTGCTGAGAAGCAAGAGAATATTGAAGGATTACCAGAGCAGCTACTG
TCTATACTTCTTTCTATAAAATCTAGCGAAAACGATAATAACGAGAATGA
CAGTTTGAGTAGCTTGTCAGTGAATGACGAGGGTGACAAGGATTTGCCAA
ATGATGCTGCTGAAAATAACAATGATGATAGTGATACTGATCAAGGTCCT
AATTCAATCAGACGTTTAGTGGTTGAGTCAGAGCCAGGTTATCATATATC
ACCATTTGACCTAAATGAAGATGGGCTGACAAATTgccaaatttgttttg
atgtcaTGGCCAATAACACAGTTGCATATTGCTCGGATTGTCAATATCAA
ATATGTTTTGGATGTCTGTCAAGTCATATTGAGTATCGTGTTATGGAAAA
TGTGATCGAGATCGTTTGTCCAGGTGATGAAAGCTGcggtaaaaaatttt
ctgatcaaCTCATAGCAGCATTTTCAACAGAACATACAATGAGCAtatta
aacaaaaacaaagttgaAGCAGAACAAAACCCAGATGTCAAAACTTGTCC
TGGTTGTCATAAAATTCaacgaaaagaaaacattgtgcaaaagaaaaaag
ggaaaagcaGTTCTCGTATTGAATGTACCTGCGGAACAATATGGTGTTTT
TCATGTTATTCTCCTTGGCATCATGGCTCCACGTGTGAAGAATACCAGAA
AGATATAGTCCAGTCTGGAAATAAATCTTTGCGTTATTGGGCAAAGAGTA
GGACAAAAGGAAGCAACAATGCTAAGAAATGTCCGAAATGTTCATTTTAT
ATTGAAAGAATATCTGGGTGTGATCACATGACATGTAATAGATGTAAAAC
CGATTTCTGTTATCGCTGTGGAGGAAAACATTACAGTTTGGGATGGCTTG
GCAATCATTATTCAAGATATAGTTTCTTGGGTTGTAAGTATAATTTGCAT
CCAAACAAACCAGTTCTAAGAGTAGCTAAAAGAAGTGGTGTTATTGTAGG
TGGTACACTGTTGATGCCTTTAGCCCTTACTGGTTTGGTTTTGGGGGCTA
CTCTAGTACTACCTTCAGTTGTCATTTATAATAAATGCAAGAAGAGGTAA
TTTGTTGGAGGAAATACATTCTGTTgattttgtataattttaaaatttgc
ttTTAGTTTTACATTAtcatatttactttttttgatagaatttgatttTG
ACAATTTTGCAAAGAATGTCTTTTGAAGAaggttttgtctttttttttca
gataaaaaggGTGAATAAAAATTACATTGATATTCTCTTTGTATATCAAT
ACacaaaatattagtttttttaaatgaaaatttatggGAAGTAACTGATt
tagttttttaatatttagatTGTAAAGGAATTTATGACAcattaatattt
tcttattttcttatacATTTCTTGCTTCTGCTTTTTGTcggcttcttttt
tttaaagcgCGGGAAGGAATTCTTGCTTTAGACTGAGACTGATTCTAAAA
TCTAAAATGTCAATTGCATCATCACCATTGTAAGAATGTGACATTACATT
ATTATGACACATTGCCTAGCATCTGTTTATCGAAAACTTGGTACCTAGGC
AAATGAAAGGGTGTGGGATGGGTATGGGTATCCCCCCCCTTAAGGCTGTT
TTTTTCTAACATGACAGCCGCTGTAACAGttggttggaaaaatcagagtc
tcactaaaagttggaaaaatggaaacaaNCCTTAAGGCTGTTTTTTTCTA
ACATGACAGCCGCTGTAACAGttggttggaaaaatcagagtctcactaaa
agttggaaaaatggaaacaattTCAACTATTTGATTCTTTAAGGataaaa
attgatcaaattagtcccaataagggtcgtaaaattcccaaaaatttccT
CCTTATAGTCCTGCTAAGGCTCCAAAGGACATACCCATCAGCTCACCACC
CTAGTAACCTCCCCCCTTAATCAAAGGTTATGAAAGGTTTGAAGTTTTGG
ATGCATGTTGTTTTTCCTCTTTCAATAgtggcataaatttatttttaata
atatAGTAAATAgaacattattttttgtttgttgcgtgtatttagtattt
tcattgttattttttaaagaattttgtttaaaattttgttcattAATTTA
TATTATGGTTTTGGGTCTGCCAATAAAAGGCATTTTTATACTCAATCACA
ATTTCTTAggaatttcttaaaaaagaaaataatttgactacttgtatttt
tttcttccgCTGTAAATAGTATGCGATTATTGTAGAGCTAAGATTTGTTG
CTGGTATGAAAATAACTTCTGTGAAACAGAAACAAtccaatattttgaat
atttggcCCAATAACATTTTTAGCCATTAGGTTATTAGTAAATTACATTT
TTACACTGTGCAGGGTAGGGGTATTGAGGAACTCTACTCTCTAACTCCTC
TGAAAATTTG Run BLAST on NCBI transcript from alignment at sc0000470:232226..236305- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024018 ID=TCONS_00024018|Name=TCONS_00024018|organism=Clytia hemisphaerica|type=transcript|length=4080bp|location=Sequence derived from alignment at sc0000470:232226..236305- (Clytia hemisphaerica)
GAAATCCCCGCGAGCCATTACTGCAGTGTCAGCATTTTTTCCGCTTCACT
CAGCAGAAAAAATCGTGAAAAGTTCTACGAATCCCATGATGACAAAATGA
AAAAACAAAGATGTTGACAGTCTGAAACCTGACAATGTGGGTTTTTTTCG
AAGCATATTTGGTTAGTATTGCTGATTGGAATATGCAAGATAAGCAGGTT
TTATTTTAATAGTGTTGTTTGTCCTTATCATTTAGTAAAATTGCTGCTAT
GAGTGGTTTTTAATGCTGTCCAAAGATTTATTTTATTGCTAAAATTTGGA
CTTTCACCATCAATCAAACCAAGAGACTTTTAGCTAAATGGTTCCTTGAA
AGTTTATTTTTCTGGTACCATTGAGAAGTATTGCTAAGTGCTTAGAATTT
ACTATTTGTTAAAGACTGTGTCCAATCACTGCACAAGAAAATGTCTACTG
ATCATCAAGAAGCTTCCACGTCAAGCTCAAGGAAAGTATCAAAACTGTCA
CATCAAATGTCATTTGAAAATGAAATTTTCGATGAGGAAAATGATATAGA
TGGATCTTTTGGTCTTGAAGAATTATTTAATGAGGAAACCAATGAAAATT
TGAGTGCTGAGAAGCAAGAGAATATTGAAGGATTACCAGAGCAGCTACTG
TCTATACTTCTTTCTATAAAATCTAGCGAAAACGATAATAACGAGAATGA
CAGTTTGAGTAGCTTGTCAGTGAATGACGAGGGTGACAAGGATTTGCCAA
ATGATGCTGCTGAAAATAACAATGATGATAGTGATACTGATCAAGGTCCT
AATTCAATCAGACGTTTAGTGGTTGAGTCAGAGCCAGGTTATCATATATC
ACCATTTGACCTAAATGAAGATGGGCTGACAAATTGCCAAATTTGTTTTG
ATGTCATGGCCAATAACACAGTTGCATATTGCTCGGATTGTCAATATCAA
ATATGTTTTGGATGTCTGTCAAGTCATATTGAGTATCGTGTTATGGAAAA
TGTGATCGAGATCGTTTGTCCAGGTGATGAAAGCTGCGGTAAAAAATTTT
CTGATCAACTCATAGCAGCATTTTCAACAGAACATACAATGAGCATATTA
AACAAAAACAAAGTTGAAGCAGAACAAAACCCAGATGTCAAAACTTGTCC
TGGTTGTCATAAAATTCAACGAAAAGAAAACATTGTGCAAAAGAAAAAAG
GGAAAAGCAGTTCTCGTATTGAATGTACCTGCGGAACAATATGGTGTTTT
TCATGTTATTCTCCTTGGCATCATGGCTCCACGTGTGAAGAATACCAGAA
AGATATAGTCCAGTCTGGAAATAAATCTTTGCGTTATTGGGCAAAGAGTA
GGACAAAAGGAAGCAACAATGCTAAGAAATGTCCGAAATGTTCATTTTAT
ATTGAAAGAATATCTGGGTGTGATCACATGACATGTAATAGGTAAGTCTT
ATGTTTACAACCATAAGTTGGTCTAAGACATCCCTCTTCTAATTTTGACA
CCCTGCTTTAGAGATATGAAAAAATAGGAAGGTCGGAATCACTGATAAAA
AGAAGATTTTTTCCTCTCTGAATGCTAAAGCGAAGAAAATTAGTTTCAAT
CAGCAATTCCAACTTTCCTATTATTCCTATCTCTAAAGAAGGGGCTGTGG
TATAGTGGTCATTGACCTTGGTTGCTGCACAGGCGACTGAGGTTCAATTC
CCACTCGCAGCAGTTCACTTGGCAAGTGAATGAACTTTCGCCCGGGTCAA
CCCATGCCATGTGAGGAGAATCGGGTAGTCAGTCCAAGGTGCTGGCGGGG
CGCTCATTGAAAGCGTCTATAGTTGCGAAAATAGGCCTCAAAGCCTCCTG
CAACTCAACCAAATAGAAAAAATAGAAAAAGGGTGTTGAAATTAGAAGAG
GGATGTCAACATTAGGACCAACTTACGGTACTAAGGAAGGAGACCAGTTA
AAATATCACTGAAAGTACCATCACCTAACTTCATCATGTAAGAGGGCAGA
ATATAAAGGGCTAATAAGTTGAACTTGGAAAGGTGAGGGAAAATACCTCA
ATCAATGGAGGCAAGTTTCTGTACTTTCTTACTGTAAGTTGGTCTAATGT
CGACATCCCGATTTCGACACCCTTCTTTCAGAGATAGAAACAATAGGAAC
CGACAGGAAGGTCAGATATCGCTGATTGGAACTAATTTTCTTTGATTAGC
GATCAGAGAGGAAAAAATTTTAGTCTATCAGTAATTCCGACCTTCCTATT
ATTTCTATCTATAAAGATGGATGTTGAAATTAGAAAAAGGATGTTGACAT
TAGACCAACTTACGGTATTTGCTAACAAATAAGTCACTTTTTCTTGTGTT
TCCAGGGTTGTGTTTTCAATTTTCTAGTTTGCAAGAATAGGTGATATGAG
GTTTTAAAAAATAAACTTAAAGCCATAAGCTCACAATTAGATATTTTTCT
GTTTTTCACAGATGTAAAACCGATTTCTGTTATCGCTGTGGAGGAAAACA
TTACAGTTTGGGATGGCTTGGCAATCATTATTCAAGATATAGTTTCTTGG
GTTGTAAGTATAATTTGCATCCAAACAAACCAGTTCTAAGAGTAGCTAAA
AGAAGTGGTGTTATTGTAGGTGGTACACTGTTGATGCCTTTAGCCCTTAC
TGGTTTGGTTTTGGGGGCTACTCTAGTACTACCTTCAGTTGTCATTTATA
ATAAATGCAAGAAGAGGTAATTTGTTGGAGGAAATACATTCTGTTGATTT
TGTATAATTTTAAAATTTGCTTTTAGTTTTACATTATCATATTTACTTTT
TTTGATAGAATTTGATTTTGACAATTTTGCAAAGAATGTCTTTTGAAGAA
GGTTTTGTCTTTTTTTTTCAGATAAAAAGGGTGAATAAAAATTACATTGA
TATTCTCTTTGTATATCAATACACAAAATATTAGTTTTTTTAAATGAAAA
TTTATGGGAAGTAACTGATTTAGTTTTTTAATATTTAGATTGTAAAGGAA
TTTATGACACATTAATATTTTCTTATTTTCTTATACATTTCTTGCTTCTG
CTTTTTGTCGGCTTCTTTTTTTTAAAGCGCGGGAAGGAATTCTTGCTTTA
GACTGAGACTGATTCTAAAATCTAAAATGTCAATTGCATCATCACCATTG
TAAGAATGTGACATTACATTATTATGACACATTGCCTAGCATCTGTTTAT
CGAAAACTTGGTACCTAGGCAAATGAAAGGGTGTGGGATGGGTATGGGTA
TCCCCCCCCTTAAGGCTGTTTTTTTCTAACATGACAGCCGCTGTAACAGT
TGGTTGGAAAAATCAGAGTCTCACTAAAAGTTGGAAAAATGGAAACAANC
CTTAAGGCTGTTTTTTTCTAACATGACAGCCGCTGTAACAGTTGGTTGGA
AAAATCAGAGTCTCACTAAAAGTTGGAAAAATGGAAACAATTTCAACTAT
TTGATTCTTTAAGGATAAAAATTGATCAAATTAGTCCCAATAAGGGTCGT
AAAATTCCCAAAAATTTCCTCCTTATAGTCCTGCTAAGGCTCCAAAGGAC
ATACCCATCAGCTCACCACCCTAGTAACCTCCCCCCTTAATCAAAGGTTA
TGAAAGGTTTGAAGTTTTGGATGCATGTTGTTTTTCCTCTTTCAATAGTG
GCATAAATTTATTTTTAATAATATAGTAAATAGAACATTATTTTTTGTTT
GTTGCGTGTATTTAGTATTTTCATTGTTATTTTTTAAAGAATTTTGTTTA
AAATTTTGTTCATTAATTTATATTATGGTTTTGGGTCTGCCAATAAAAGG
CATTTTTATACTCAATCACAATTTCTTAGGAATTTCTTAAAAAAGAAAAT
AATTTGACTACTTGTATTTTTTTCTTCCGCTGTAAATAGTATGCGATTAT
TGTAGAGCTAAGATTTGTTGCTGGTATGAAAATAACTTCTGTGAAACAGA
AACAATCCAATATTTTGAATATTTGGCCCAATAACATTTTTAGCCATTAG
GTTATTAGTAAATTACATTTTTACACTGTGCAGGGTAGGGGTATTGAGGA
ACTCTACTCTCTAACTCCTCTGAAAATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024018-exon-sc0000470-1575043694:234865..236305 | TCONS_00024018-exon-sc0000470-1575043694:234865..236305 | Clytia hemisphaerica | exon |
| TCONS_00024018-exon-sc0000470-1575043694:232226..233844 | TCONS_00024018-exon-sc0000470-1575043694:232226..233844 | Clytia hemisphaerica | exon |
| TCONS_00024018-exon-sc0000470-1510915933:234865..236305 | TCONS_00024018-exon-sc0000470-1510915933:234865..236305 | Clytia hemisphaerica | exon |
| TCONS_00024018-exon-sc0000470-1510915933:232226..233844 | TCONS_00024018-exon-sc0000470-1510915933:232226..233844 | Clytia hemisphaerica | exon |
| TCONS_00024018-exon-sc0000470-1491911889:234865..236305 | TCONS_00024018-exon-sc0000470-1491911889:234865..236305 | Clytia hemisphaerica | exon |
| TCONS_00024018-exon-sc0000470-1491911889:232226..233844 | TCONS_00024018-exon-sc0000470-1491911889:232226..233844 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000470 | supercontig | sc0000470:232226..236305 - |
Blast
BLAST of TCONS_00024018 vs. Swiss-Prot (Human)
Match: RN217 (Probable E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens GN=RNF217 PE=2 SV=4) HSP 1 Score: 165.236 bits (417), Expect = 1.151e-42 Identity = 99/280 (35.36%), Postives = 146/280 (52.14%), Query Frame = 3
Query: 885 CQICFDVMANNTVAYCSDCQYQICFGCLSSHIEYRVMENVIEIVCPGDESCGKKFSDQLIAAFSTEHTMSILNKNKVEAEQ-NPDVKTCPGCH---KIQRKENIVQKKKGKSSSRIEC-TCGTIWCFSCYSPWHHGSTCEEYQKDIVQSGNKSLRYWAKSRTKGSNNAKKCPKCSFYIERISGCDHMTCNRCKTDFCYRCGGKHYSLGWLGNHYSRYSFLGCKYNLHPNKPVLRVAKRSGVIVG----GTLLMXXXXXXXXXXXXXXXXSVVIYNKCKKR 1697
C++C + + + C+ +C CL ++ +V +EI CP E +F ++ ++ H SI K +E + + K CP C ++K +I + +S +I+C TC +WCF C+SPWH G C+EY+K G+K LR+WA G NA+KCPKC +I+R GCDHMTC++C T+FCYRCG ++ L + G+H S S GCKY P +P LR R V G L+M L L + + L IY CKK+
Sbjct: 263 CRVCLE---DKPIKPLPCCKKAVCEECLKVYLSAQVQLGQVEIKCPITECF--EFLEETTVVYNLTHEDSIKYKYFLELGRIDSSTKPCPQCKHFTTFKKKGHIPTPSRSESKYKIQCPTCQFVWCFKCHSPWHEGVNCKEYKK-----GDKLLRHWASEIEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRCGERYRQLRFFGDHTSNLSIFGCKYRYLPERPHLRRLVRGSVCAGKLFIAPLIMVLGLALGAIAVVIGLFVFPIYCLCKKQ 532
The following BLAST results are available for this feature:
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